NO14G00370, NO14G00370 (gene) Nannochloropsis oceanica

Overview
NameNO14G00370
Unique NameNO14G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3229
Alignment locationchr14:154348..157576 +

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Properties
Property NameValue
DescriptionGlycine-rich rna-binding protein 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:154348..157576 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: XP_005853497.1 (glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526] >EKU22860.1 glycine-rich rna-binding protein 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 228.8 bits (582), Expect = 2.200e-56
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0 
Query:    1 MGDYDAYGVPAPVTEAPPRPSSPGQSEEGFKLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGGRR 117
            MGDYDAYGVPAPV EAPPRP+SPGQSEEG+KLFVGNLSFRTESAALR+AFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEA+AAISRMDNAELDGRTLRVNFARPREEFGGRR
Sbjct:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRR 116
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: EWM24762.1 (31 kda ribonucleoprotein [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 2.200e-56
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0 
Query:    1 MGDYDAYGVPAPVTEAPPRPSSPGQSEEGFKLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGGRR 117
            MGDYDAYGVPAPV EAPPRP+SPGQSEEG+KLFVGNLSFRTESAALR+AFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEA+AAISRMDNAELDGRTLRVNFARPREEFGGRR
Sbjct:    1 MGDYDAYGVPAPVAEAPPRPTSPGQSEEGYKLFVGNLSFRTESAALREAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEADAAISRMDNAELDGRTLRVNFARPREEFGGRR 116
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: EWM26565.1 (cold-inducible rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0 
Query:    9 VPAPVTEAPPRPSSPGQSEEGFKLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGGRR 117
            V +   E   +      ++EG KL++GNLSF+T    LR+AF   G + F+ VI +R+TG+SRGFGFV +  K +A+ AI  ++  ELDGR +RVNFA+PR+    RR
Sbjct:   26 VASTAVEETSKNEEEALNDEG-KLYIGNLSFKTTEDGLREAFSEHGEVSFARVISDRDTGRSRGFGFVTFTNKEDAQGAIDALNETELDGRPIRVNFAQPRDPNAPRR 132
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: OAJ08712.1 (hypothetical protein A4X03_g8111, partial [Tilletia caries])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:   31 KLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGG 115
            K++VGNLS+ T   +LRDAF PFG +  S V+++RETG+SRGFGFV +    EA AAI+ +  +ELDGR +RVN A  R   GG
Sbjct:   49 KIYVGNLSWHTTDQSLRDAFSPFGELQDSIVMKDRETGRSRGFGFVTFRNGDEANAAITSLHESELDGRRIRVNMANSRTSGGG 132
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: OAJ09243.1 (hypothetical protein A4X06_g7845 [Tilletia controversa])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 0 
Query:   31 KLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGG 115
            K++VGNLS+ T   +LRDAF PFG +  S V+++RETG+SRGFGFV +    EA AAI+ +  +ELDGR +RVN A  R   GG
Sbjct:   46 KIYVGNLSWHTTDQSLRDAFSPFGELQDSIVMKDRETGRSRGFGFVTFRNGDEANAAITSLHESELDGRRIRVNMANSRTSGGG 129
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: EFJ10098.1 (hypothetical protein SELMODRAFT_128832, partial [Selaginella moellendorffii] >EFJ34894.1 hypothetical protein SELMODRAFT_81392, partial [Selaginella moellendorffii])

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-15
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:   31 KLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPRE 111
            KLF+G L++ TE   LRDAF PFG I+   VI++RETG+SRGFGFV Y    EA+ A+  MD   LDGRT+RVN+A  R+
Sbjct:   38 KLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAMEAMDGRVLDGRTIRVNYATQRQ 117
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: XP_002563507.1 (Pc20g10130 [Penicillium rubens Wisconsin 54-1255] >CAP86342.1 Pc20g10130 [Penicillium rubens Wisconsin 54-1255] >KZN86723.1 Glycine-rich RNA-binding protein [Penicillium chrysogenum] >OQE20943.1 hypothetical protein PENFLA_c015G07056 [Penicillium flavigenum])

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-15
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 0 
Query:   31 KLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNF--ARPREEFGG 115
            K++VGNLS+ T   +LR AF  FG+IV S V+ +RETG+SRGFGFV Y    EAEAAI+ ++  +LDGR +RVN   ARP   FGG
Sbjct:    3 KIYVGNLSWHTSDESLRQAFGEFGQIVDSIVMVDRETGRSRGFGFVTYSSAEEAEAAINALNEQDLDGRRIRVNLANARPTGGFGG 88
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: GAU39640.1 (hypothetical protein TSUD_18210 [Trifolium subterraneum])

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-15
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:   18 PRPSSPGQSEEGFKLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFG 114
            P+P  P   E  +KLFVGNLS+   S  L  AF+  G +V + V+ + ETG+SRG+GFV Y  K E EAA++ MDN EL+GRTLRV+ A+ +   G
Sbjct:  183 PKPKEPLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNVELEGRTLRVSLAQGKRSEG 278
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: XP_024525097.1 (glycine-rich RNA-binding protein 4, mitochondrial [Selaginella moellendorffii] >XP_024518389.1 glycine-rich RNA-binding protein 4, mitochondrial [Selaginella moellendorffii])

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-15
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:   31 KLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPRE 111
            KLF+G L++ TE   LRDAF PFG I+   VI++RETG+SRGFGFV Y    EA+ A+  MD   LDGRT+RVN+A  R+
Sbjct:   38 KLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAMEAMDGRVLDGRTIRVNYATQRQ 117
[Close]
BLAST of NO14G00370 vs. NCBI_GenBank
Match: XP_006681369.1 (hypothetical protein BATDEDRAFT_27077 [Batrachochytrium dendrobatidis JAM81] >EGF77951.1 hypothetical protein BATDEDRAFT_27077 [Batrachochytrium dendrobatidis JAM81] >OAJ43905.1 hypothetical protein BDEG_27219 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 0 
Query:   25 QSEEGFKLFVGNLSFRTESAALRDAFEPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRTLRVNFARPREEFGG 115
            ++  G K+FVGNLS+ T++ +L DAF  FG +V S V+++RETG+SRGFGFV +     A AA+  M+  +L+GR +RVN A  R  +GG
Sbjct:    6 EAAPGTKVFVGNLSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESASAAVDAMNGQDLNGRNIRVNLANERPAYGG 95
The following BLAST results are available for this feature:
BLAST of NO14G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853497.12.200e-5695.69glycine-rich rna-binding protein 4 [Nannochloropsi... [more]
EWM24762.12.200e-5695.6931 kda ribonucleoprotein [Nannochloropsis gaditana... [more]
EWM26565.11.300e-1644.44cold-inducible rna-binding protein [Nannochloropsi... [more]
OAJ08712.11.100e-1553.57hypothetical protein A4X03_g8111, partial [Tilleti... [more]
OAJ09243.11.100e-1553.57hypothetical protein A4X06_g7845 [Tilletia controv... [more]
EFJ10098.11.500e-1556.25hypothetical protein SELMODRAFT_128832, partial [S... [more]
XP_002563507.11.500e-1555.81Pc20g10130 [Penicillium rubens Wisconsin 54-1255] ... [more]
GAU39640.11.500e-1548.96hypothetical protein TSUD_18210 [Trifolium subterr... [more]
XP_024525097.11.500e-1556.25glycine-rich RNA-binding protein 4, mitochondrial ... [more]
XP_006681369.11.900e-1547.78hypothetical protein BATDEDRAFT_27077 [Batrachochy... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002225NSK002225Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00370.1NO14G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589693gene_5602Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100612g2gene5724Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00370.1NO14G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00370 ID=NO14G00370|Name=NO14G00370|organism=Nannochloropsis oceanica|type=gene|length=3229bp
ATGGGTGATTACGATGCGTACGGTGTCCCTGCCCCTGTAACTGAGGCCCC
TCCCCGCCCATCTTCCCCGGGCCAAAGCGAAGAGgtacgtgtatttgtga
gggtgggagtgggtggacgggttctaagcttttgttcctccgtagtccgt
ccgactcccatctcagttgttcattgaatcagatgttcgtcccacttggg
ccggcggcagcggcacgtgtgtccatgcttgtttgtctgcctgtcaagtt
taattcattgaagcaataaaagaagacgcacttgtttgttagtgaagtag
acgggagacaaggagtacaatatcacccccattctcaagcagcagatggt
ttaccattcccgctcccacgtctgcccgacgctgtatgtctccgtctttt
tactgccttactatccccctaattgcctgtatcttaaatgcctagcgacc
atacttttgactgtttaccctcatcttctttcctgttcccccttccgctt
ttttacccttctacatcaccccctccccttccatcttccttccctcaagc
agaggttgccctcgatgtttgactaggtccccccctcctcctgtcttccg
taccatccacttactcacagtgcatctccctgtagaaataaaaggggagc
attgacgagcctgcattcctcctacccataaaccccgccctccctccctc
cctctccccccccccccctcccaacccacaacagGGTTTCAAGCTCTTCG
TGGGCAACCTCTCCTTCCGCACTGAATCGGCCGCCCTCCGTGACGCTTTT
GAGCCCTTTGGCCGCATTGTTTTTTCTACCGTTATCGAGAACCGGGAAAC
TGGCCAGAGCCGgtacggagggagggagggagggagggagggagggaggt
ggatactgctttccttggtgtgtgcagtgccttgtgccattatggggatg
gggagagataaaatggagtatggttctttttgatccgtgctggttttaat
tcatatgcatacttttttttttgggattccttgcgacagTGGCTTCGGTT
TTGTGGTGTATGAGCAGAAGCACGAGGCAGAGGCGGCCATTTCCCGCATG
GACAACGCCGAGCTGGACGGACGCACCCTGCGAGTGAATTTCGCCCGACC
CCGgtaagaaacgatattaagagatgcaccgaggggaaaggggaaggagg
ggaaggaggggcgctcgaaaattacgcgcagaccgaagggaggagggagg
agggagggaacgaatcgatgtgctctcggagagggtcgtgatgacctaat
gtaaatgtactatagagaaacttatgaaacttgtgttatagtgaccctaa
ttagactgagcataacttagtcaaatcgagtatgagataccttccgtccc
ctgactctccttcctcctcctgccccctcccctcctcactttccattttc
tcctcctttcccttcccgtccatcactttcccacagGGAGGAGTTCGGCG
GTCGTCGTGGAGGCCGCGGTGGCTTTGGTGGCGGTTTTGGCGGGGGCCGA
GGCGGCGGGGGATTTGGTGGAGGCATGGGCGGCGGTGgtacgtatttttc
tctcctttttctcttctttctctgttcttctgtcaatttgatttcttttc
gattttgggggagttgggaggggagggagggctttccatttccccccgtc
tttttttcttttcttttcccattttcctcttctcctttttgaaagcaagc
tcattctttcctccctccctccctctctccctcggtcgctcttttcgcac
agGCTATGGCGCGCCTCGCTACCCCGGTGCGGGCGGATATGCAGCTGGCG
GCCAGgtgggtcgaggaggaggagggagggagggagggagggagggaggg
agggagggagggagggagggagggagggagggagggagggaaggtggggg
tgtgaagattgctactcgttgctactttttctattctcttgactaatacc
ttctctctccctcttctcttctcgactttcttctccgcctctctcctcct
actccccctattccctcgtcgtcgtcgtcttcctttctcttgaacaccag
TACGGAGCAGGCGCCGGCTTGGGCGGCGCGGGGGGCTACGGCGGCTACGC
AGGCGCAGGAGCTGGTGGGgtgagtaatatgggttatggttgttgtaata
tgggtgatgattattgtaagatggattgttctggggtgggagttgatggc
ccgggggcgtcacggcatggatgagggtgggagtgggggaggacatggat
gtgcgtgtgggggaggggtttgcgatgtcgtactagtgttcgtgtctgcc
cctgtgtttgtatctgtgtctacctatttttctgtgtaggtgtatgtgta
tctcagaatctgagtctgactttatgtgtacgtgtgggtgggtgtgagtg
tctagatgggtgtggagggatttcttcccttttctcggtttccccgtaac
cttcaccttcaagtacctccccgcattccctccccctctcacctccctcc
ctccctccctccctcccttcctcccttcctacctccctcttccctaagTA
CGGCGGTGCAGGGGGGTACGGCGGCGCGGCTCCTTACGGCCAGGGCGGAC
GTGGTGGCGGCGGGTGgtaaatgaagactcggccaccaccacgaagaaga
cagaagaaagatcatcatcataagaataaatacaagaataagaagataat
aagaataaggtgcaggtgaaaatggagaggacaaagacaaggaagacgga
aaggattgagaagaagaccagaccatagaaaacaaagcaccaccgcgacg
agtgacgaacgacgacggcgagggagggagggagggagggagggagggga
tgacgacagcgcagactcattaatcgcagggcaagagaacaaaagtcagA
AGGGAAGCAGACCGTCAGAAGCCTGACGACCACGACATCGGATTGAACCA
GCAGAAGCGACTAGAGACAGGCAGGTGCAGCAGCAGCAGCAGCAGCAGCG
GTGATCGCAGGAGAAAATGCAACAAGAGTAGCAGCAACAGCAGCAGCAGC
AGCAGCAGTAGCAGAGAGCAAGCGAGACAGGGAGAGAGGGAAGGCGAGTG
GAAGGGGGCGATCGAACGAGAGTTGAAGTTGAAGCAGAAGAAACGGCAGA
CAGACAGCATAGGGGGTGTGAGAGTGTGA
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protein sequence of NO14G00370.1

>NO14G00370.1-protein ID=NO14G00370.1-protein|Name=NO14G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MGDYDAYGVPAPVTEAPPRPSSPGQSEEGFKLFVGNLSFRTESAALRDAF
EPFGRIVFSTVIENRETGQSRGFGFVVYEQKHEAEAAISRMDNAELDGRT
LRVNFARPREEFGGRRGGRGGFGGGFGGGRGGGGFGGGMGGGGYGAPRYP
GAGGYAAGGQYGAGAGLGGAGGYGGYAGAGAGGYGGAGGYGGAAPYGQGG
RGGGG*READRQKPDDHDIGLNQQKRLETGRCSSSSSSSGDRRRKCNKSS
SNSSSSSSSSREQARQGEREGEWKGAIERELKLKQKKRQTDSIGGVRV*
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Synonyms
Publications