NO14G00200, NO14G00200 (gene) Nannochloropsis oceanica

Overview
NameNO14G00200
Unique NameNO14G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1833
Alignment locationchr14:73212..75044 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:73212..75044 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of NO14G00200 vs. NCBI_GenBank
Match: EWM24778.1 (hypothetical protein Naga_100446g4 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 5.400e-58
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 0
Query:    1 MECVDGVCKFVPKSQRGGGHKGVGENDENVAPALPLVAVGDKLPMPLPLEQLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEG 168
            MEC DGVCKFVP+SQRG     +G N+ENV PALPLV+VGDK PMPL  E LEEGG++ +LQ LC+   D GRVVVLDLWSNACVRCPEALDKLN ++   +EDV+K  V FA+VNIDDK KAR L+AER+W  L+H ++DA TK+ LKARFGL SVPFVMVFDQ G
Sbjct:    1 MECADGVCKFVPRSQRG---VQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVG 164          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: OEU22258.1 (hypothetical protein FRACYDRAFT_258990 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-13
Identity = 41/120 (34.17%), Postives = 72/120 (60.00%), Query Frame = 0
Query:   71 RGRVVVLDLWSNACVRCPEALDKLNALAERMK-EDVEKGLVIFASVNIDDKAKARGLIA---ERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGNPKKIDFDALPAM 187
            +G+  V+D W+  C +CP+ALDKL+ +A+  K +DV+     F S+  D    AR +I    + +W +++H F+D   KE  K   G   VPF +V D+ G+++Q G+ +++DF+ +P +
Sbjct:   28 KGKNTVIDFWTTGCTQCPDALDKLDDMAQDPKYKDVQ-----FISICCDKLDGARDIIERDDDLRWQNVNHYFMDKEDKETAKKLLGFKQVPFYVVMDENGSITQSGSGRQVDFEEVPGV 142          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: KOO28056.1 (redoxin domain-containing protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-11
Identity = 49/172 (28.49%), Postives = 84/172 (48.84%), Query Frame = 0
Query:   54 EGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGL------IAERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGNPKKIDFDAL--PAMWKAKRQVGNEAKKEGGIDRQKKEDVAKEEMP 218
            + G++TTL +  +     G+ +VLD W   C +CP A+ KL+ +A +  +      V FA+  +   ++  G       + E +W +L H+++  A KE  K +FG   +PF +VF  +GT+   G+P+ IDF  +  P    A       A+++   D   K  V  +E P
Sbjct:   19 KAGESTTLAAFRA-----GKPLVLDFWHTRCTKCPTAISKLDTIAPKHPD------VTFAACALSLGSETEGTQEQVLDLLEGQWENLRHMYMTVAEKEAAKTQFGFTQLPFAVVFGADGTILFSGDPQGIDFATVFAPKPVAAAVAAAPNAEQQLSADLASKASVCAKEAP 179          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: GAX27682.1 (hypothetical protein FisN_13Hh223 [Fistulifera solaris])

HSP 1 Score: 75.5 bits (184), Expect = 2.400e-10
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 0
Query:   71 RGRVVVLDLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLIA---ERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGN 175
            RG   V+D W+  C  CP+ALDKL  LA           V FAS+  D    AR +I    + +W+S+ H F++ A KE+ K  FG   VPF +V +    ++Q GN
Sbjct:   26 RGHHTVIDFWTTRCTNCPDALDKLQHLAATSSN------VRFASICCDSLDGAREIIGRHDDMRWSSVHHYFMEHADKELCKQIFGFKKVPFYVVLNDRNEITQYGN 126          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: GAX27221.1 (hypothetical protein FisN_13Lh223 [Fistulifera solaris])

HSP 1 Score: 75.5 bits (184), Expect = 2.400e-10
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 0
Query:   47 LPLEQLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLIA---ERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGNPKKIDFDAL 184
            LPL  L+   +  T +  C      G+  V+D W+  C  CP+AL+KL  LA           V FAS+  D    AR +I    + +W+S+ H F++   KE+ K  FG   VPF +V + +  ++Q GN  KI++D +
Sbjct:    7 LPLICLDTAEETNTHEITC------GQHTVIDFWTTRCTNCPDALNKLQHLAATSSN------VRFASICCDSLDGAREIIGRHDDMRWSSVHHYFMEHVDKELCKHIFGFKQVPFYVVLNAQNEITQYGN--KINWDPI 132          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: XP_002179487.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49310.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 71.6 bits (174), Expect = 3.500e-9
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 0
Query:   78 DLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLI---AERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGNPKKIDFDALPAMWKAKRQVGNEAKKEGGIDRQKKE---DVAKEEMPVKALQAFTLDE 229
            D W+  C RCP+ALDKL+ LA   +       V F S+  D    AR +I    E +W ++ H F++   KE  K   G ++VPF ++ +++G   QMGN   IDF+ L         V  E +KE  +  +       V K E+    L  F++D+
Sbjct:   65 DFWTTRCTRCPDALDKLDDLAAAPR----FANVQFVSICCDKLDGAREIIEKETEPRWQNVDHYFMEHQYKEEAKNVLGFSAVPFYVMLNEKGETIQMGN--AIDFERLAVEEAEPDSVATENEKENMLTIENPVVDLHVGKNELRAIKLDDFSVDD 215          
BLAST of NO14G00200 vs. NCBI_GenBank
Match: XP_009033675.1 (hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens] >EGB11290.1 hypothetical protein AURANDRAFT_70838 [Aureococcus anophagefferens])

HSP 1 Score: 70.9 bits (172), Expect = 6.000e-9
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   83 ACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEGTLSQMGNPKKIDFDAL 184
            A VRCP  L KL+   E    D     V FASV +DD   A+ ++ E +W  ++H  +DA TKE+ KA +G  +VP+++V D  G  +  G+  K+  + +
Sbjct:   27 ALVRCPACLTKLDGFVEAFGGD-----VAFASVCLDDPEFAKEIVEEHEWERMAHAGMDAETKELAKAHWGFKAVPYLVVLDATGETAFAGSALKVTAETI 122          
The following BLAST results are available for this feature:
BLAST of NO14G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM24778.15.400e-5868.26hypothetical protein Naga_100446g4 [Nannochloropsi... [more]
OEU22258.11.800e-1334.17hypothetical protein FRACYDRAFT_258990 [Fragilario... [more]
KOO28056.12.200e-1128.49redoxin domain-containing protein [Chrysochromulin... [more]
GAX27682.12.400e-1037.38hypothetical protein FisN_13Hh223 [Fistulifera sol... [more]
GAX27221.12.400e-1032.86hypothetical protein FisN_13Lh223 [Fistulifera sol... [more]
XP_002179487.13.500e-931.85predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_009033675.16.000e-935.64hypothetical protein AURANDRAFT_70838 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00200.1NO14G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630406gene_5589Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100446g4gene5706Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00200.1NO14G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00200 ID=NO14G00200|Name=NO14G00200|organism=Nannochloropsis oceanica|type=gene|length=1833bp
TAAAACTTGACAAATTGGAACTAGCTTTTATTTCGAAAAGCCAGCAGAGT
ATCTGTGGCGGCTTTTAAAAATTTGTGTAGGGGCAATGGGGACGACTCTG
GAGAGTCCTTCTCCATCTCTCAGCCACCGCACAATTATCGCTGCATATCG
TCACAGGCCGCTTAGTTTCAGCAGTGTCGCATGTTTCTGTCCATATTATG
CAACGAACGCCTGCCAATGCCGGGCGGGACGGTACCTCTCGAGgtaccgt
gctggtgtggtgtgtttgaagagggcgggaagaagacgcgatcgccgacg
acgttttggagaaagaatgcgatgagacaccacctcctcacacatttcct
tccccctacacacagGAAGCGAGCGAAGAGGCAGCGAGAGCAAAAGCAAC
AGCAGCACCACCAGCAGCAGTAGTAGCAGCAGCGTAAGGACCAGCACCAG
CTCCAGGACCAGGACTCTCTCGACACCAGGGACGTCATGGAGTGCGTGGA
TGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGGCATAAGG
GAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCTAGTTGCG
GTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTGAGGAGGG
AGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGGGATCGAG
GCCGAGTAGTCGTGTTGGgtaagagtggagacggtgggaactggaagagg
gatgcatggccagaagcggcattgccttgtcgactgtgtgcaccaatctg
ctcatctcgacttgctcgctctttgagcattagtctgtgctctttggacg
tccaacctatcattttattccctttcctccttaaccctcctccctcttcc
tccttccctcccaccccacccatcagATCTCTGGTCCAATGCCTGCGTCC
GGTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAG
GAAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACATTGATGA
TAAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGgtgagggacggcagata
aagtgagggaaggatatgtggtagtgtagctcgccataggaggacgatca
agcgagatatcgcggcagacacacccattccgcccctccctttttgttaa
cttccttcctccccattccccccacccccctttccttccctccatccttc
tcgtccacagGAAGTGGACCAGCCTCTCTCATCTCTTCGTCGATGCCGCC
ACCAAAGAGATGCTCAAGGCACGCTTTGGCTTGGCGAGTGTACCTTTTGT
GATGGTGTTTGACCAGgtaaggcgacggattgggaagagagggagagagg
gagggaggaatggaaacgagaggaggtgaaaagcaggggcaaaccattgg
tgagggacatgatccgaaaactgaaaatgcctccacaccattcctccccc
cccactccaccccctctcctcgccattcctcatttctccgtctctcccgc
tgtcgctcagGAGGGCACGCTTAGCCAGATGGGCAACCCCAAGAAGATCG
ACTTTGATGCCCTCCCGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAAT
GAGGCGAAAAAAGAAGGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGC
GAAAGAGGAGATGCCTGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGG
ACTTTTGAGTGGAAGGAAAAAGGAAGGAAAAGAACCGATGAAATAAAGCA
AAGGGTTCGCCACACTCAAGAAAATAAAGCACT
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protein sequence of NO14G00200.1

>NO14G00200.1-protein ID=NO14G00200.1-protein|Name=NO14G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MECVDGVCKFVPKSQRGGGHKGVGENDENVAPALPLVAVGDKLPMPLPLE
QLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAER
MKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKA
RFGLASVPFVMVFDQEGTLSQMGNPKKIDFDALPAMWKAKRQVGNEAKKE
GGIDRQKKEDVAKEEMPVKALQAFTLDEDF*
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Synonyms
Publications