NO14G00190, NO14G00190 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G00190 vs. NCBI_GenBank
Match: EWM24780.1 (Nucleolar protein 12 [Nannochloropsis gaditana]) HSP 1 Score: 217.2 bits (552), Expect = 5.700e-53 Identity = 121/195 (62.05%), Postives = 146/195 (74.87%), Query Frame = 0 Query: 44 LSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFG---RKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDE 236 L+LVFDPEARREYLTGFSKRK ERR FGLAMQ+VK+RKARL+EREE+RKAK+ A D+LPAS+K A+ G G ++TT+TFGESV+VTT GIPS G+EE+ G VLAMVR ERKG GVD+EQL AGSVA FKK++ G MPAK K+KGG+E T++N SGSYMPKGKG+GE++ Sbjct: 42 LALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIKGAEPYLSGTALANGKEKETMETKAKEEVYDDRFTTATFGESVLVTTSFGIPS----GDEEDEEGGVLAMVREERKGGGVDKEQLQAGSVAHFKKLVAGKMPAKPKKKGGKERTKQNTSGSYMPKGKGQGEED 232
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_005855822.1 (rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526] >EKU20538.1 rrna processing protein rrp17, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 99.8 bits (247), Expect = 1.300e-17 Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 0 Query: 44 LSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVK 107 L+LVFDPEARREYLTGFSKRK ERR FGLAMQ+VK+RKARL+EREE+RKAK+ A D+LPAS+K Sbjct: 69 LALVFDPEARREYLTGFSKRKKERRTFGLAMQQVKNRKARLMEREELRKAKKGALDDLPASIK 131
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_002288568.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94004.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 79.7 bits (195), Expect = 1.400e-11 Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 0 Query: 38 LLNKRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFG-----------RKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDG-VDREQLHAGSVARFKKILTGNMPAKTK--RKGGREG 216 L ++ + + FD R EYLTGFS RK ERR FGLAMQKVKDR+A+L ER++ R+A+ + +E+ + +E + G + + TT FG V VTT GIPS + E+++ A E+ G VD Q AG V + + G M +K K ++GG++G Sbjct: 37 LPQRKKVEITFDKSNREEYLTGFSTRKKERRAFGLAMQKVKDRQAKLEERKDNREAQLEKVEEIERNKEELRKGVAGEDDSXXXAGSYEEQASSAPQHNEKEMHTFQDERTTHQFGGLVSVTTTFGIPS---DDEDDDVINSKRAFYEREQHGSSHVDTAQKRAGDVQNYIASVKGTMGSKKKNAKQGGKKG 225
BLAST of NO14G00190 vs. NCBI_GenBank
Match: EJK56126.1 (hypothetical protein THAOC_24044 [Thalassiosira oceanica]) HSP 1 Score: 71.2 bits (173), Expect = 5.100e-9 Identity = 81/202 (40.10%), Postives = 111/202 (54.95%), Query Frame = 0 Query: 42 RGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEAD-------EMAFGRKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAKTK--RKGGREGTRENISGSYMPKGKGKGED 235 R + + F+PE RR YLTG S RK ERR FGLAMQKVKDR+A++ ER+E R+A+ + +++ + K E + XXXXXXXXXXXXXXXXX T S FG V VTT G+P + ++ R + VD Q AG+V + + G+M ++ K + GGR+GT G+ KG G + Sbjct: 33 RKVEISFNPEDRRGYLTGLSARKKERRAFGLAMQKVKDRQAKIEERKEQRQAQLEKIEDIERNKKALRRGQDGEVEAGSDAEXXXXXXXXXXXXXXXXXXXQTRSQFGGLVSVTTTYGMPEDDDSVTDDRHD----FYSRETHDSNHVDEAQKQAGNVNSYIAKVKGSMGSRKKHQKSGGRKGTH----GASTMKGMGNANE 226
BLAST of NO14G00190 vs. NCBI_GenBank
Match: XP_002181812.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47026.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 68.6 bits (166), Expect = 3.300e-8 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0 Query: 40 NKRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDE 101 N+ G +VFDP+AR+ YL GFS RK ERR +GLAMQKVKDRKA+L +R E++KA + +E Sbjct: 15 NRGGEEIVFDPQARQAYLQGFSTRKRERRVYGLAMQKVKDRKAKLEQRAEMKKAVLEQIEE 75
BLAST of NO14G00190 vs. NCBI_GenBank
Match: OQR86439.1 (hypothetical protein ACHHYP_10536 [Achlya hypogyna]) HSP 1 Score: 65.5 bits (158), Expect = 2.800e-7 Identity = 64/201 (31.84%), Postives = 100/201 (49.75%), Query Frame = 0 Query: 41 KRGLSLVFDPEARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDELPASVKEADEMAFGRKGXXXXXXXXXXXXXXXXXQYTTSTFGESVMVTTFLG-IPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILTGNMPAK-TKRKGGREGTRENI-SGSYM---PKGKGKGEDE 236 K L + FD + R++YLTGFSKRK ERR+FG M+ K +KA L+E+ +IRKA+Q E V + ++A + +T FG V VTT +G + S E+ EE ++LA + +++ D++ + +K L +P+K +K K RE N G+ + KGKG G+D+ Sbjct: 10 KSKLVVTFDADKRKDYLTGFSKRKQERRRFGHDMEAFKKQKA-LIEQRKIRKAEQKKLLESLPEVADVKQVAEDK----------DKEVMSFDDAHTQDKFGNVVTVTTMVGDLKSDSEDELSEEENEQLLAHLAKKKERASRDKQMTLFQRIQHKRKGLA--LPSKRSKMKAARENAARNKGKGAKVVAPKKGKGAGDDD 197 The following BLAST results are available for this feature:
BLAST of NO14G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G00190 ID=NO14G00190|Name=NO14G00190|organism=Nannochloropsis oceanica|type=gene|length=1764bpback to top protein sequence of NO14G00190.1 >NO14G00190.1-protein ID=NO14G00190.1-protein|Name=NO14G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bpback to top Synonyms
Publications
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