NO14G00120, NO14G00120 (gene) Nannochloropsis oceanica

Overview
NameNO14G00120
Unique NameNO14G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1945
Alignment locationchr14:35414..37358 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:35414..37358 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO14G00120 vs. NCBI_GenBank
Match: EWM24787.1 (hypothetical protein Naga_100725g2 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 2.800e-16
Identity = 66/138 (47.83%), Postives = 82/138 (59.42%), Query Frame = 0 
Query:    1 MAVPP--SSEVDPLRLIITGLRTMLLVLSLWELAVSNVL-------------------PRLSVTPLSEETRLPTDPSPSLSNMAFDYHDTELRAASSALVGRGLLTTVVLLALSLLLLFLRVSWDSSTPFGGPWQRLF 118
            MA+ P  +S  D LRLIITGLRT+LL+LSLWELA+SN                     P  + TPLS  +     P  S++   F Y   +L AASS LVGRGLL T + LA++L+LL  RVSWD+ TP GGPW+ LF
Sbjct:  101 MALRPAGASSADMLRLIITGLRTLLLLLSLWELALSNFFLLSPHIVSGPTIQAWSFTSPASTSTPLSPSS-TSASPQESIACSLFYY---KLCAASSVLVGRGLLATSLGLAIALVLLLFRVSWDACTPIGGPWKDLF 234
The following BLAST results are available for this feature:
BLAST of NO14G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24787.12.800e-1647.83hypothetical protein Naga_100725g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL137nonsL137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00120.1NO14G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100725g2gene5696Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00120.1NO14G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00120 ID=NO14G00120|Name=NO14G00120|organism=Nannochloropsis oceanica|type=gene|length=1945bp
CTTTTCTATATCGCTCGCTCTCAGTTGTTCTCCACCCCAAATATGTTTTG
GGTCATAACATGACAATTGATAATTTGATACACTTGAGGAGAAACCACGG
TCCACGTGGATCTCACGATAAGAACAAAGTCAACACTTTGCAACTACTTT
CGTCCCCTGGTATTGGCAACGTGCCTCGCCCTTGGGGCTCAGGGCTCGGC
CCACCAAAGTGAAGAGCACAGGAAAGCAAGAACAAGGACGAAGCTTGAGT
TCCAGTTTGGAATGCGTTGTTGCGACACCAAAAAGTCACGCTAGACCCCC
AACATCTCACTTTTTCTTGTCGACCTCCCCACCCTCCTCACCCTCTCCCC
CGAAGAACCCTTCACAACGCAGGAGGGCGATACGACCTCCTACCTAGTCG
TTCGGGCTGGGCGAGGGGATCAGGCTAGAGTGCACGCACGGTACAAGGGT
AAGAAGCAAGGAATCAAGACAGCAAGATGGCCGTCCCTCCATCCTCGGAG
GTCGACCCTCTCCGTCTCATCATCACCGGCCTAAGGACCATGCTGCTCGT
TCTCTCGCTGTGGGAGCTAGCCGTGTCCAACGTCCTCCCAAGGCTGTCAG
TTACACCGTTGTCGGAGGAAACGgtgagtcgactggacgaaggggagggt
ggggagtgaggcaaaggccagggacgatgatggcggatgccgcgtaatgc
attgccttcgtcatcccctcgatttcgcaccggctccttcagtgagagcc
acgaaagaaccttttctctccttcagcctcctcctctgacatcttcatat
cctcgccccattcatccatcccttactccttccagAGATTACCCACTGAT
CCTTCCCCCTCGCTCTCGAACATGGCCTTCGACTATCACGACACGGAATT
GCGCGCCGCCTCCTCCGCTCTCGTCGGACGGgtacgtgtttactgcgtcc
ccttccctccttacctccctccctcccatcctgcctcttattctgcaatt
gctcctattcgcacctgctgctgctcaccgtcactccatctcatgtcctc
atacaccgttttcgcctttccattgcataactgtccatcttcactcccaa
acctccctccttccctccctcccttcctccttcccttctttcagGGCCTC
CTGACCACAGTCGTGCTGCTGGCCCTATCCTTGCTCCTGCTTTTCCTCCG
CGTCTCGTGGGACTCTTCCACGCCCTTCGGCGGACCTTGGCAGgtgaggg
aggacaagagggagggaaggagggaaggaggaagggaaggagagagcgaa
ggagggcaggaggaatggggactcacaggtcatgctccgaactctcttcc
catcccccggcagAGGCTCTTCCACCTCCACTTGCAAGAGCATGATCAGC
ACGACCGCCGCCGCGCATCCACCCTCCTCCTTCCTGCCCTCCCTCCACCT
CTGCTGTGGTTCTTCCGGGGGGGGGGACGGAGGGACGGAGGGGGGGGAAA
GATGCCGATGTGGGCGACGGCGCTCTGATCAGAGGCCGAATTCTGATCCT
TTGTCTGTTAGCCGCTCGGGGTAGCGATAGGCAGTCATCCCCTCGCGATT
GCGAACCCGGTGTAATGGAGTTGAATGGGATGTCGAGTAAGGTGGGAAGG
CAGGCGCTTGGTGTCCGCCGGGGTATCTCGTGAGCGAGTGACAGATTGAG
AGATGGATTGGTCCTGGTGTGTGTCCGGTGCAGTGAAGCCTCGAAATGGG
ACGGTTAAGGCAGCGTGGAGGCCCAGGCGATGCATGCGTGCCCCACACGA
GAGACGAGGATTACCGGCAGTGGGAGGTACAGGTTTGTTGTGACAGGGGA
TGAGGAAGGGACGGGGCGATGCCTCTTACGGTGGCCGGCTTCCACCCTTC
ATTCGCGGGGATGGATGACTTGCTTGGCAGGGAGGGAGGGGGGGA
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protein sequence of NO14G00120.1

>NO14G00120.1-protein ID=NO14G00120.1-protein|Name=NO14G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MAVPPSSEVDPLRLIITGLRTMLLVLSLWELAVSNVLPRLSVTPLSEETR
LPTDPSPSLSNMAFDYHDTELRAASSALVGRGLLTTVVLLALSLLLLFLR
VSWDSSTPFGGPWQRLFHLHLQEHDQHDRRRASTLLLPALPPPLLWFFRG
GGRRDGGGGKMPMWATAL*
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Synonyms
Publications