NO13G03230, NO13G03230 (gene) Nannochloropsis oceanica

Overview
NameNO13G03230
Unique NameNO13G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2181
Alignment locationchr13:942935..945115 -

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Properties
Property NameValue
DescriptionPlastid-lipid associated protein PAP / fibrillin family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:942935..945115 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO13G03230 vs. NCBI_GenBank
Match: EWM20745.1 (putative plastid-lipid-associated protein chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 1.500e-82
Identity = 152/194 (78.35%), Postives = 172/194 (88.66%), Query Frame = 0
Query:    1 MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV 195
            MLLSGF P  T TGS+K   QIK+LKK LF+++EGSD+GRV+  G ++RTI AI ALA  NPTPNSATS LASGTWDLVWTTE+EIHLFRK+GLLGC C+AVLQTTEQS +RLENIIEF QNSALRI+SKL+PE +GPRVYFTWEDARVIYKGF LPFPSFFFV+NAYYDN+YLD E+RCV+DIRGNYLVVRRV
Sbjct:   71 MLLSGFFPAGT-TGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: XP_005855694.1 (plastid-lipid associated protein pap, partial [Nannochloropsis gaditana CCMP526] >EKU20661.1 plastid-lipid associated protein pap, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 206.5 bits (524), Expect = 7.700e-50
Identity = 111/194 (57.22%), Postives = 125/194 (64.43%), Query Frame = 0
Query:    1 MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV 195
            MLLSGF P  T TGS+K   QIK+LKK LF+++EGSD+GRV+  G ++RTI AI ALA  NPTPNSATS LASGTWDLVWTTE                                                  E +GPRVYFTWEDARVIYKGF LPFPSFFFV+NAYYDN+YLD E+RCV+DIRGNYLVVRRV
Sbjct:   59 MLLSGFFPAGT-TGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTE--------------------------------------------------EPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 201          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: XP_005785179.1 (hypothetical protein EMIHUDRAFT_471624 [Emiliania huxleyi CCMP1516] >EOD32750.1 hypothetical protein EMIHUDRAFT_471624 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 110.2 bits (274), Expect = 7.500e-21
Identity = 69/188 (36.70%), Postives = 100/188 (53.19%), Query Frame = 0
Query:   15 SKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILA-LAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTE------QSERRLENIIEFDQNSALRIVSKLTPEA-TGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV 195
            S +G A    LK  +      S  G +  D ++Q+  +A LA L+  NPTP  A S L SGTW+ VWTTE E++    KGLLG   R   QT +       +   L N+IEF++   LR+ S ++P+A  G R  F+++   V ++   LP P    V   + + +YLD ELR  +D+RG+ LV  RV
Sbjct:  175 SGRGAAARGSLKAEIRSLAASSRGGVLPFDAAQQQRFDAALAELSALNPTPEPARSPLFSGTWECVWTTESELNFAVDKGLLGLPWRRTYQTIDVPRGALTTPSTLTNVIEFEEGGFLRVGSTISPDAERGERFSFSFDSCAVRWRSLELPLPP---VGRGWGELLYLDDELRVQRDVRGDLLVATRV 359          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: CBJ32674.1 (plastid-lipid associated protein PAP / fibrillin family protein [Ectocarpus siliculosus])

HSP 1 Score: 104.8 bits (260), Expect = 3.200e-19
Identity = 56/168 (33.33%), Postives = 89/168 (52.98%), Query Frame = 0
Query:   24 QLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVV 192
            +LK+ L D++  + +G    +  ++     I A+   NP   S TS   S  W L WTTE EI    ++GL G     V Q  +   R L N + F  +S   + S + PE +GPRV F +E  ++ Y GF++P P    V   ++++VYLD++LR  +D+RG+  V+
Sbjct:   97 KLKQRLLDTVRDTKRGISTSEEQRKDIDELIAAIEPFNPNAKSVTSESLSARWILEWTTEREIIFLMERGLPGKPSGPVEQDIDVDARTLSNRMIFGDDSLFEVASSIDPEDSGPRVNFEFEACKLKYGGFTIPLPP---VGKGWFESVYLDQDLRVTRDVRGDVTVL 261          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: XP_005783977.1 (hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >XP_005789400.1 hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516] >EOD31548.1 hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >EOD36971.1 hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 101.3 bits (251), Expect = 3.500e-18
Identity = 61/182 (33.52%), Postives = 91/182 (50.00%), Query Frame = 0
Query:   20 AQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSER--------RLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRR 194
            A+ ++LK  L ++  G   G        +R  +    LA   PT + A+S L  GTWD++WTTE E+    K+GLLG  C A  Q   ++           L+N IEFD    LR+ S   P A+G RV F ++     ++   LP P    V + ++D +Y+D+ELR  +D RG+  V  R
Sbjct:  256 AERRRLKAQLLEACGGQSLGAEAGAEDLRRVRDLSDRLAALTPTADPASSPLLCGTWDIIWTTESELLALTKRGLLGLPCTAAYQAIARTREGGAGPWAYSLDNAIEFD-GGFLRVGSTCEPAASGGRVNFVFQSCAARWRALELPLPP---VGSGWFDVLYVDEELRVCRDSRGDLQVCAR 433          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: KOO30170.1 (putative plastid-lipid-associated protein chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 100.9 bits (250), Expect = 4.600e-18
Identity = 67/190 (35.26%), Postives = 94/190 (49.47%), Query Frame = 0
Query:    7 PPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILA-LAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPE-ATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV 195
            PP ST T      AQ + LK  L +    S  G    D + Q     ++A L   NPT + A S L +G W  VWTTE E++    KGL G       QT +     L N+IEFD   AL + S + P+ A G R  F +E   V ++G ++P P    V   + + +YLD ELR  KD+RG+ ++  +V
Sbjct:  136 PPSSTFTAG----AQRRSLKAELLELARASRGGIEPFDAAAQARFERVMAQLPALNPTADPARSTLFNGEWTCVWTTEKELNFAVDKGLFGLPWVRTYQTIDVPGGTLSNVIEFD-GGALTVGSTIAPDTALGSRFNFAFERCTVRWRGLTVPLPP---VGKGWGELLYLDDELRIQKDVRGDIVIATKV 317          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: KOO28300.1 (putative plastid-lipid-associated protein chloroplastic-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 99.0 bits (245), Expect = 1.700e-17
Identity = 62/183 (33.88%), Postives = 88/183 (48.09%), Query Frame = 0
Query:   21 QIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQT---TEQSERR----------LENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLV 191
            Q + LK  L  + EG   G    +  + R IN I  L + NPT   A S    GTW +VWTTE E+      GLLG  C+   QT   T  ++ R          L N I F +   LR+ S   P+A G RV F +E     ++   LP P    V + +++ +YLD++LR   D+RG++ V
Sbjct:  275 QRRALKTALMQACEGQRLGAATDEAGRARIINLIRELEQLNPTARPAQSTKLLGTWRVVWTTESELLALTNSGLLGLPCQGASQTIGRTAAADERGAQRGAFDYSLSNEISF-EGGFLRVGSSCEPQAQGGRVNFRFESCAAKWRSVQLPLPP---VGSGWFEVLYLDEDLRLCTDVRGDWQV 453          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: XP_009038352.1 (hypothetical protein AURANDRAFT_28329, partial [Aureococcus anophagefferens] >EGB07123.1 hypothetical protein AURANDRAFT_28329, partial [Aureococcus anophagefferens])

HSP 1 Score: 97.8 bits (242), Expect = 3.900e-17
Identity = 58/145 (40.00%), Postives = 79/145 (54.48%), Query Frame = 0
Query:   54 ILALAE-ANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCA-CRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTP---EATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRR 194
            +LAL E ANPTP  A S L SG WDL+WTTE E++    KGL     C  V QT + +   LEN + FD +S L + S + P   +A G R  F +    + ++G  +P P    V   + D +YLD  LR  +DIRG+ L+  R
Sbjct:   29 LLALLEAANPTPRPAESPLFSGAWDLLWTTERELNFAMDKGLFAAGPCTGVSQTIDVAAGDLENTVLFDNDSKLFVGSSIAPSPDDAAGRRFDFKFSSCYLQWRGTKVPLPP---VGEGWGDILYLDDTLRVQRDIRGDLLIATR 170          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: XP_006573219.1 (PREDICTED: probable plastid-lipid-associated protein 11 isoform X2 [Glycine max] >KRH75290.1 hypothetical protein GLYMA_01G076100 [Glycine max])

HSP 1 Score: 95.1 bits (235), Expect = 2.500e-16
Identity = 67/179 (37.43%), Postives = 95/179 (53.07%), Query Frame = 0
Query:   19 LAQIKQLKKNLFDSLEGSDKG-RVDKDGSKQRTI-NAILALAEANPTPNSATSGLA-SGTWDLVWTTE-DEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRR 194
            +AQ    K++L   +   D+G R   D +K+  I  AI A+A A     S T+G A S TW L+WTTE +++ +  K  L G     VLQ  +  ER L N+I F  +    + S +   A+  RV F +  A +  K + +P P F      ++D VYLD +LR VKDIRG+YLVV R
Sbjct:   34 IAQSGSAKEHLLALIADQDRGIRTQSDPAKRAAIVQAIDAVASAG--AGSVTTGDALSATWRLLWTTEKEQLFIIEKAPLFGTRAGDVLQVIDVRERTLNNVISFPPDGVFFVRSSI-EVASPQRVNFRFTSAVLRGKNWEIPLPPF---GRGWFDTVYLDDDLRVVKDIRGDYLVVNR 206          
BLAST of NO13G03230 vs. NCBI_GenBank
Match: KRH75291.1 (hypothetical protein GLYMA_01G076100 [Glycine max])

HSP 1 Score: 95.1 bits (235), Expect = 2.500e-16
Identity = 67/179 (37.43%), Postives = 95/179 (53.07%), Query Frame = 0
Query:   19 LAQIKQLKKNLFDSLEGSDKG-RVDKDGSKQRTI-NAILALAEANPTPNSATSGLA-SGTWDLVWTTE-DEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRR 194
            +AQ    K++L   +   D+G R   D +K+  I  AI A+A A     S T+G A S TW L+WTTE +++ +  K  L G     VLQ  +  ER L N+I F  +    + S +   A+  RV F +  A +  K + +P P F      ++D VYLD +LR VKDIRG+YLVV R
Sbjct:   34 IAQSGSAKEHLLALIADQDRGIRTQSDPAKRAAIVQAIDAVASAG--AGSVTTGDALSATWRLLWTTEKEQLFIIEKAPLFGTRAGDVLQVIDVRERTLNNVISFPPDGVFFVRSSI-EVASPQRVNFRFTSAVLRGKNWEIPLPPF---GRGWFDTVYLDDDLRVVKDIRGDYLVVNR 206          
The following BLAST results are available for this feature:
BLAST of NO13G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20745.11.500e-8278.35putative plastid-lipid-associated protein chloropl... [more]
XP_005855694.17.700e-5057.22plastid-lipid associated protein pap, partial [Nan... [more]
XP_005785179.17.500e-2136.70hypothetical protein EMIHUDRAFT_471624 [Emiliania ... [more]
CBJ32674.13.200e-1933.33plastid-lipid associated protein PAP / fibrillin f... [more]
XP_005783977.13.500e-1833.52hypothetical protein EMIHUDRAFT_231716 [Emiliania ... [more]
KOO30170.14.600e-1835.26putative plastid-lipid-associated protein chloropl... [more]
KOO28300.11.700e-1733.88putative plastid-lipid-associated protein chloropl... [more]
XP_009038352.13.900e-1740.00hypothetical protein AURANDRAFT_28329, partial [Au... [more]
XP_006573219.12.500e-1637.43PREDICTED: probable plastid-lipid-associated prote... [more]
KRH75291.12.500e-1637.43hypothetical protein GLYMA_01G076100 [Glycine max][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL130nonsL130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03230.1NO13G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642236gene_8978Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100249g2gene9660Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03230.1NO13G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03230 ID=NO13G03230|Name=NO13G03230|organism=Nannochloropsis oceanica|type=gene|length=2181bp
ACCTAGCCTATGCGTCACCCTCTATGTACAGTATACTGATTACCACATGC
ACAGTAACAGGCACAAGCGCGACAGGTAGGCAGGGAACCCTACTTAAAAG
CGTGCACATAGACAGAGTAATGGGTTGCTGCGAAGCATCGAGGGAGGAAA
GGGGGAGGGGGGAGGTCGGAGTTACAGAGCAAGGAGCACCCCCTTGGTGG
TACTGCCGCTGGTGCTGGTCGCGGCGCTATGGACCAAAATAgtacgtgcg
ggtgaaagagaaggagggagggcaagtgagcctgctcgagacacaagaga
gaaatatgcaaccggcggaaagggaggcatactgttttaatgcatgcttg
ctccccatttattattttttccacgcctttcctcctcttctccatagGCA
AGCGCCTTTATCTCCTCCTCCCTCCCTTCCTCTTTCTTCTTTTCCCCCCC
TCCGTCCTCCACGTGCTCCACTGCGCCCACGATGTTGCTCTCGGGCTTTC
CCCCCTTCTCTACGGCGACTGGCAGCAAAAAGGGCCTGGCACAAATAAAA
CAGCTCAAGAAGAATgtaggtcataagctggagggaaggaagacccacgc
cgcatagacctacacgtaacgcacagaaaaaaaactccatcatgcataat
tatcactattattattctcgaaacgaataaattaataaacaaacataaca
aacataaacaaacaaacaaaagaatcgtccatttcaatccttcctcacca
ccaatctcaaccccgcactcgcagCTCTTCGACTCCCTCGAAGGCTCGGA
TAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACCATCAACGCTA
TCCTAGCCCTGGCGGAAGgtaagtaagagcgatcctccttcccttccttc
ctccgtcccttgtccctcctgttctccaggtatggaaaataaatctcgag
ttagtctgcatccagcccactctctacctctccctcccttcgaagCCAAT
CCTACCCCCAACAGCGCCACCAGCGGTTTAGCCTCGGGCACATGGGACCT
GGTGTGGACAACGGAAGATgtgagaacgggagggagggagagagggggta
aggctgagaagggcgtacaagaggaaggagaaatggtgatatttccctcc
ttttattccctctttcgtccctccctcctcaagaatctacttttaggtgg
tgcctgccaagccatcttacaagccacatagagcactcgattttaaaatc
aaatttaaaattcaataattcaaaaataattcagaagaggcaacgagaag
ttagaccacagtttcctcaatataaatattcgttcttctttaaatcactc
tctctctttctgttaccgctcagGAAATCCACCTCTTCAGGAAAAAGGGT
CTCCTGGGTTGTGCCTGTCGGGCGGTCCTCCAAACCACGGAGCAGTCGGA
GAGGAGGCTGGAAAACATCATTGAATTTGACCAAAACTCGGCTTTAAGGA
TCGTCTCCAAGCTCACACCCGAGgtaggtgatttgtaagcacagtcagat
tagttatactgttgttccaatatcaacggtatgcccgatggttgctcgtg
gcgcttcaagagcgtgtggtaggctactgcttcgtatgcttccggaggtg
agggcgaagggtaggctgccctccacatttatcacccactgcgactggta
tcttgtgtcgacgtctacaaggggggaacagacgcgctgtcggtttttct
gtcgcctctccaaacgtgcaccttcagaccttccctcctcccctcgcttc
ctccctccctccctccctcgttcctttagGCCACCGGTCCTCGTGTGTAT
TTTACATGGGAGGACGCCCGCGTGATTTACAAGGGGTTCTCGCTGCCATT
CCCCTCGTTCTTCTTCGTCAGAAATGCCTAgtaagatgggggtaaaaagg
agaaagggagatagggaagggatagagaaaggaagggagacggcaaacaa
aatgcccacatttgaagcctccattttcttgcgaatagtctcattaaatc
ccttcccccccctttcctcctcaccttcagCTACGATAATGTCTACTTAG
ACAAGGAACTGCGGTGCGTCAAAGACATTCGTGGAAACTACCTGGTGGTA
AGACGAGTGTAGGGAGGGAGGGCGGGAGGGA
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protein sequence of NO13G03230.1

>NO13G03230.1-protein ID=NO13G03230.1-protein|Name=NO13G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRT
INAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACR
AVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVI
YKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV*
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Synonyms
Publications