NO13G03210, NO13G03210 (gene) Nannochloropsis oceanica

Overview
NameNO13G03210
Unique NameNO13G03210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length579
Alignment locationchr13:938246..938824 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:938246..938824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL130nonsL130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03210.1NO13G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03210.1NO13G03210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03210 ID=NO13G03210|Name=NO13G03210|organism=Nannochloropsis oceanica|type=gene|length=579bp
ATGCACCAATCGCAAAGCAGCAGCCAAAACCACCACCACGGACAGTCCAA
AGAGGAGCACAAGAGCGACAAGGACGACCGTGACAGTGCAGCGTTGGATG
GTGATGATAATCACCGCGAGGATTGTATTCCCGCTCCTGCATCAAGACGA
ACAACACCAGGGAGTGGAGAAGAAGGGGGAGGGGCAACATTCTCGGACGA
ACGTCTCGCCACAAGTATCGCATTTGACCTCGCCTCTCTCGAGCCGGGTC
TTGGCAAACCTTGTCTGCCTGAGGAACCTCTTCAACCACCACTATCGACA
CCCCAAATACCACCACCGCCTACAGCCTCAGATAAGGAAGGAGAGACATC
AAAAATAATTTTTAAGAAAGCAGGGGAAGGAGTGACAGCAGGAACAGCAG
AACCAGCAACGGAAGCAGCAACAGGAGCAGCAGCGAGCAGGGTGGACAGA
GACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCGGGGCTCCTG
CGAGTTGTGCTACCAGCTCAAGACACAGTGCGACAAGAAGTTCCCTTGCG
GAAGGTGCGTGCTCTATAAAAGGGAATGA
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protein sequence of NO13G03210.1

>NO13G03210.1-protein ID=NO13G03210.1-protein|Name=NO13G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MHQSQSSSQNHHHGQSKEEHKSDKDDRDSAALDGDDNHREDCIPAPASRR
TTPGSGEEGGGATFSDERLATSIAFDLASLEPGLGKPCLPEEPLQPPLST
PQIPPPPTASDKEGETSKIIFKKAGEGVTAGTAEPATEAATGAAASRVDR
DFLPWPSAVKKRPRGSCELCYQLKTQCDKKFPCGRCVLYKRE*
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Synonyms
Publications