NO13G03190, NO13G03190 (gene) Nannochloropsis oceanica

Overview
NameNO13G03190
Unique NameNO13G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr13:929829..931591 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:929829..931591 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO13G03190 vs. NCBI_GenBank
Match: EWM20742.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 9.400e-64
Identity = 133/213 (62.44%), Postives = 164/213 (77.00%), Query Frame = 0
Query:   40 RLDLAEHKLRLLLLSSISSTSDSGTSMAAVDYFLSTLISELEAEQILSIEDLFGVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            +L + + KLR+L+ S +SS+S +    A V+Y  STLISELEAE I+SIED+F VIQ +VPE +L +L +EDEDD+E+ VSK+W  L KE VI    D+E  VM + R  + GCELC R MPLTRHHLRPR +HK LLKQG+SQ+ELNICA ICRPCH+AVHR++DN+TLA   YTV ALL DEK+GKFVRWASKQRGR Q+ GHN  L+YQR
Sbjct:   19 QLKVLDCKLRVLMDSCLSSSSQT----ADVEYVHSTLISELEAEHIVSIEDVFSVIQTFVPEEMLLSLGIEDEDDIELFVSKVWLLLQKERVIQETTDDE--VMSMSR--ESGCELCERAMPLTRHHLRPRAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: CBN77276.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.0 bits (284), Expect = 6.800e-22
Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:  153 CELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            C LC R+MPLTRHH+ P++ HK+  K+G S   LN    ICRPCH+AVHR+HD   LA    TV  LL DE +G+FV WA KQR  + QD  N  LRY+R
Sbjct:  125 CSLCERLMPLTRHHVMPKSTHKRYRKKGYSDAVLNRTIAICRPCHSAVHRAHDALALAERFTTVEELLADETIGRFVAWARKQRTTSVQDSRNNLLRYRR 224          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: PNW78591.1 (hypothetical protein CHLRE_09g390800v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 110.2 bits (274), Expect = 9.800e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 0
Query:  152 GCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            GC LC R MPLT HHL PR +H K  ++ ++ EELN    +CRPCH+A+HR++DN TLA    T+ ALL+ E + KF+RWA KQ+   ++D  N   RY+R
Sbjct:  128 GCALCGRQMPLTFHHLIPRDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 228          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: KXZ47559.1 (hypothetical protein GPECTOR_34g718 [Gonium pectorale])

HSP 1 Score: 108.6 bits (270), Expect = 2.800e-20
Identity = 68/188 (36.17%), Postives = 101/188 (53.72%), Query Frame = 0
Query:   70 DYFLSTLISELEAEQILSI-EDLFGVIQNYVPENLLRALAVEDEDDMEVL----VSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            D+ + ++++EL+   ++S  +D        + EN+      E E   + L    VS + S + +   +   ED+E   +G       GC +C R MPLT HHL PR +H K  K+G+  E+LN    ICRPCH+A+HR++DN TLA   YT+  LL  E + KFV WA KQ+     D  N + RY+R
Sbjct:   39 DFLVESVVAELQQGGLVSSQQDAHDRFDQLLYENVTGVEPDEVEGFADALHRLIVSAVESAVAE---LEGSEDDEQANIG-------GCAMCGRQMPLTFHHLIPRDVHDKYKKKGLGTEQLNAGIDICRPCHSAIHRTYDNKTLAAHYYTLHRLLASEPLQKFVAWARKQKVTTASDITNPRFRYRR 216          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: XP_001694451.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 107.8 bits (268), Expect = 4.900e-20
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:  153 CELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            C LC R MPLT HHL PR +H K  ++ ++ EELN    +CRPCH+A+HR++DN TLA    T+ ALL+ E + KF+RWA KQ+   ++D  N   RY+R
Sbjct:    1 CALCGRQMPLTFHHLIPRDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 100          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: KZT30127.1 (hypothetical protein NEOLEDRAFT_1160105 [Neolentinus lepideus HHB14362 ss-1])

HSP 1 Score: 98.2 bits (243), Expect = 3.900e-17
Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 0
Query:   43 LAEHKLRLLLLSSISSTSDSGTSMAAVDYFLSTLIS--------ELEAEQILSIEDLFGV----IQNYVP----ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEE-LNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            L +H ++ LL+     TS   T+ + +D F+S L S        EL      ++ ++ G+    ++   P    E+LL       +DD   L+ K+    +KE   PP       +    R   K CELC R +PLT HHL PR+ H K+LK+    EE LN  A +CRPCH+AVHR   N+ LA   YT+  LLE E + K+ R+ASKQR
Sbjct:    8 LKDHLVQHLLMDP-ELTSSEETAASELDDFVSYLSSEIWPCLPKELRNASYSTLANVPGIDEFALEELTPPTVIESLLSYGICSGDDDAFRLLRKVLQDYVKELCAPPP------IWSATRA--KECELCGREVPLTYHHLIPRSTHAKVLKRKWHPEEMLNSVAWLCRPCHSAVHRVASNEDLARSYYTLDLLLEREDIQKWTRYASKQR 209          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: XP_001749355.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ85876.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 97.4 bits (241), Expect = 6.600e-17
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 0
Query:   85 ILSIEDLF--GVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQD 243
            ILS++  +   V+Q   P + +  +   +  D+   VS        ++V+P  E EE+GV          CELCAR +PLTRHHL PR +H KL+K  + + ELN  A +CR CH+AVHR H N  LA   ++V  LL DE V ++V +ASK + +++Q+
Sbjct:   74 ILSVDGQYHEAVLQKATPHSAVVRVQFTEYTDVVEDVS-------LDDVMPAPEAEELGV----------CELCARNVPLTRHHLYPRCMHGKLVKT-MDKAELNQVALLCRSCHSAVHRLHGNAELAASYHSVELLLADEAVQRWVLYASKLKKQSRQE 215          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: KXN68992.1 (hypothetical protein CONCODRAFT_79537 [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-16
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 0
Query:   59 TSDSGTSMAA--VDYFLSTLISELEAEQILSIEDLF--------------GVIQNYVPENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQG-ISQEELNICAT-ICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRYQR 253
            TS   TS  +  V+  +  L    E +Q+  +EDL                ++Q  + E LL      +E ++E L S   SR LK+N+I        G + +E      CELC R MPLT HHL PR  H  L K+G  +++++    T ICRPCHT +HR++DN  LA    TV  LLE EKV KF+ + SKQ+ R++  G    LRY +
Sbjct:    2 TSSVNTSKLSQLVNQTIIDLDKSEEVDQVPGVEDLILEIVNSLNIGAYEVEILQLELNEQLLDFDLFSNESELE-LFSITLSRRLKDNLI-------FGEVPVEEEDKGSCELCEREMPLTFHHLIPRETHSHLAKKGTFTKDDMRTRGTNICRPCHTHLHRTYDNLELAINYNTVEKLLESEKVCKFIEYISKQKIRSRVRG-AVPLRYSK 204          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: XP_007868349.1 (hypothetical protein GLOTRDRAFT_79058 [Gloeophyllum trabeum ATCC 11539] >EPQ53041.1 hypothetical protein GLOTRDRAFT_79058 [Gloeophyllum trabeum ATCC 11539])

HSP 1 Score: 95.5 bits (236), Expect = 2.500e-16
Identity = 72/205 (35.12%), Postives = 102/205 (49.76%), Query Frame = 0
Query:   49 RLLLLSSISSTSDSGTSMAAVDYFLSTLISEL-----------EAEQILSIEDLFGV-IQNYVPENLLRALA----VEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLL-KQGISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            RLLL+  ++S     T+ A +D F+S L SE+               + S+ D+  + +    P   +  L       D+D     + K+    +KE   PP       V    R   K CELC R +PLT HHL PR+ H K L K+   Q+ LN  A +CRPCH+AVHR+  N+ LA   YT+  LLE E + K+ ++ASKQR
Sbjct:   20 RLLLVPELNSA--DATASAELDDFVSYLASEIWPRLPEETREASYSTVSSLPDIDELPLDEVAPPTFVETLVSYGICSDDDSAVRWLRKVLLDYVKETCAPPP------VWSTTR--TKECELCGREVPLTYHHLIPRSTHAKALKKKWHPQDMLNSVAWLCRPCHSAVHRAASNEDLARSYYTLELLLEREDIQKWAKYASKQR 214          
BLAST of NO13G03190 vs. NCBI_GenBank
Match: EJD52758.1 (hypothetical protein AURDEDRAFT_55402 [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 94.0 bits (232), Expect = 7.300e-16
Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 0
Query:  101 ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGDKGCELCARVMPLTRHHLRPRTLHKKLLKQG-ISQEELNICATICRPCHTAVHRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQR 237
            ++L+    V D +D   L+       +++   PP   ++       R G  GCE+C R MPLT HHL PR++H K+LK+G    E LN  A +CR CH+ VHR   N+ LA   YTV  L+E E + ++  WAS+QR
Sbjct:   75 DSLVAYGVVPDAEDALRLLRAAVDAFVEQASSPPAIGKQT------RAGVDGCEVCTRDMPLTYHHLIPRSVHSKVLKRGWHPAERLNAVAWLCRSCHSTVHRVASNEDLARNFYTVDLLIEREDIQRWRAWASRQR 205          
The following BLAST results are available for this feature:
BLAST of NO13G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20742.19.400e-6462.44conserved unknown protein [Nannochloropsis gaditan... [more]
CBN77276.16.800e-2254.00conserved unknown protein [Ectocarpus siliculosus][more]
PNW78591.19.800e-2149.50hypothetical protein CHLRE_09g390800v5 [Chlamydomo... [more]
KXZ47559.12.800e-2036.17hypothetical protein GPECTOR_34g718 [Gonium pector... [more]
XP_001694451.14.900e-2049.00predicted protein, partial [Chlamydomonas reinhard... [more]
KZT30127.13.900e-1736.02hypothetical protein NEOLEDRAFT_1160105 [Neolentin... [more]
XP_001749355.16.600e-1738.75hypothetical protein [Monosiga brevicollis MX1] >E... [more]
KXN68992.11.100e-1636.32hypothetical protein CONCODRAFT_79537 [Conidiobolu... [more]
XP_007868349.12.500e-1635.12hypothetical protein GLOTRDRAFT_79058 [Gloeophyllu... [more]
EJD52758.17.300e-1638.69hypothetical protein AURDEDRAFT_55402 [Auricularia... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL130nonsL130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007630NSK007630Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03190.1NO13G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604768gene_8982Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100249g8gene9665Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03190.1NO13G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03190 ID=NO13G03190|Name=NO13G03190|organism=Nannochloropsis oceanica|type=gene|length=1763bp
ATGAATAGGAAGATCAAACAGCGCCAACAGCAACAACCGGCACCAAAAGT
CAGAGATGACGACGGTGGGGAAGAGGATGAGCTCGATGAGCTCGCTGCCG
gtaagcacacatacccctcttctttcctacaacaaggagagacaaagcac
agtggtgccatcgtctcgcttaacaggacaccaggtcctcttccgagaaa
tcgtagcagcagcaacgtaacatcaacatgaaagttaatctcgacctctc
gcgtttatcctacccttgcactcagCAACAACCTTGCTGGCAAGGCTCGA
TCTAGCCGAGCACAAGCTACGCCTCCTGCTGTTGTCCTCCATTTCTTCGA
CGTCGGACAGCGGTACCTCGgtgcgtgccgatacgcgtgccttcatccct
ttaacttttcaccacagcacttaccgcattccttctctctaaggctcgaa
tcagtctcgcgacttctcatccgcgtcatgcccacccacattcacgcagA
TGGCAGCAGTTGACTACTTCCTTTCCACACTCATCTCGGAATTAGAAGCC
GAACAAATTCTTTCCATCGAGGACTTGTTTGGCGTCATCCAGgtaagatt
aaaaatacatatgtatatctatatacatatatttctgtacatatatttct
ctctatgtacaacgtattattctttcatgtttgcactgtagtagaagtac
cgacaggagagtttctacacaccttggtgaataagatacaaccaaagaga
taagataagtgaagctaagaaaacttatgcgtgtgcattccttactcact
acaacacacattagAATTACGTACCTGAAAATTTGCTGCGCGCGTTGGCC
GTGGAAGATGAGGACGACATGGAGgtaaatgaatcgatatcttggcgtgc
atgtcggtcgttcaatctttgctgtcgatcgtaaattcctttcgcttttc
agcttccaattttttaaataaaaatagatttaccctatatttgaagtatt
tccctcgagggtttacgtactccgggtaatatgcctgattttcaactgca
tattttctcctttttctgccgatacgcctgatttggaatgttataaatta
ccgatcctgatcgatggcatttttttctttttttccttgtctttgtctcg
gttttaaccttcagGTTCTAGTGAGCAAGCTCTGGTCCCGCCTTCTCAAA
GAAAATGTGATTCCACCTCAAGAAGACGAGGAGGTGGGAGTCATGGGGTT
GGAAAGAAGGGGGGACAAGGGTTGTGAGTTGTGTGCCCGTGTAATGCCCT
TGACGCGGCACCATCTCCGGCCTCGGACACTGCATAAAAAGCTGCTTAAG
CAGgtaagcgagggcaagcggggtgacctgttgaccgtattgcaaaggtg
gtatgagtgaggctgctgcttgattctcacctccacccggacatatgtcg
tgtttttcacagGGGATCTCACAAGAGGAGCTGAATATATGTGCTACAAT
CTGCAGgtgagtcaatagatgacggtatgctttcatctcattccttcact
gatctcctactgtcctgccttatccttcatccaagGCCCTGCCACACGGC
TGTGCACCGAAGCCACGACAACGACACACTGGCCACATTGCTATACACCG
TTCCTGCGTTGTTAGAGGACGAAAAAGTTGGCAAATTTGTGCGATGGGCG
AGCAAGCAACGAGGACGGGCGCAACAGGATGGTCACAACCAACAGCTTCG
CTATCAACGCTAA
back to top

protein sequence of NO13G03190.1

>NO13G03190.1-protein ID=NO13G03190.1-protein|Name=NO13G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MNRKIKQRQQQQPAPKVRDDDGGEEDELDELAAATTLLARLDLAEHKLRL
LLLSSISSTSDSGTSMAAVDYFLSTLISELEAEQILSIEDLFGVIQNYVP
ENLLRALAVEDEDDMEVLVSKLWSRLLKENVIPPQEDEEVGVMGLERRGD
KGCELCARVMPLTRHHLRPRTLHKKLLKQGISQEELNICATICRPCHTAV
HRSHDNDTLATLLYTVPALLEDEKVGKFVRWASKQRGRAQQDGHNQQLRY
QR*
back to top
Synonyms
Publications