NO13G03100, NO13G03100 (gene) Nannochloropsis oceanica

Overview
NameNO13G03100
Unique NameNO13G03100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2718
Alignment locationchr13:888892..891609 +

Link to JBrowse

Properties
Property NameValue
DescriptionNpc21 dicdi ame: phosphatidylglycerol phosphatidylinositol transfer protein 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:888892..891609 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR003172ML_dom
Homology
[Close]
BLAST of NO13G03100 vs. NCBI_GenBank
Match: XP_005853383.1 (npc21 dicdi ame: phosphatidylglycerol phosphatidylinositol transfer protein 1 [Nannochloropsis gaditana CCMP526] >EKU22977.1 npc21 dicdi ame: phosphatidylglycerol phosphatidylinositol transfer protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.7 bits (491), Expect = 6.700e-46
Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 0 
Query:   21 AQEHPLPFSLCGPDALGLDSISLNEWPVVPGKDVVIKASYTPNVTVTGGKALATVHVLGIPLTETRDICNEPGVRCPLIKGQPTTTILRDHVPSLTPGLGVSVRVEMYDESGEKLMCVEVHVDVKTHPLIGLPGWLKPS 160
            +++H LPF LCGPD LG++ I LN WP+VPG+++ I A YTPNVTVTGG+AL TVHVLGIPLTE R IC+E GV CPL+    TT+++  HVP LTPG GV  RVE++D  G +L C++  V+V+THPLIG+P W KPS
Sbjct:   24 SEDHLLPFKLCGPDELGVEVIRLNAWPLVPGRELTITAIYTPNVTVTGGEALVTVHVLGIPLTERRAICHESGVHCPLLPHHSTTSVIHAHVPGLTPGFGVDARVELFDGRGRRLTCLDARVEVRTHPLIGVPSWSKPS 162
[Close]
BLAST of NO13G03100 vs. NCBI_GenBank
Match: EWM21974.1 (MD-2-related lipid-recognition protein [Nannochloropsis gaditana])

HSP 1 Score: 193.4 bits (490), Expect = 8.800e-46
Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 0 
Query:   21 AQEHPLPFSLCGPDALGLDSISLNEWPVVPGKDVVIKASYTPNVTVTGGKALATVHVLGIPLTETRDICNEPGVRCPLIKGQPTTTILRDHVPSLTPGLGVSVRVEMYDESGEKLMCVEVHVDVKTHPLIGLPGWLKPS 160
            +++H LPF LCGPD LG++ I LN WP+VPG+++ I A YTPNVTVTGG+AL TVHVLGIPLTE R IC+E GV CPL+    TT+++  HVP LTPG GV  RVE++D  G +L C++  V+V+THPLIG+P W KPS
Sbjct:   52 SEDHLLPFKLCGPDELGVEVIRLNAWPLVPGRELTITAIYTPNVTVTGGEALVTVHVLGIPLTERRAICHESGVHCPLLLHHSTTSVIHAHVPGLTPGFGVDARVELFDGRGRRLTCLDARVEVRTHPLIGVPSWSKPS 190
The following BLAST results are available for this feature:
BLAST of NO13G03100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853383.16.700e-4660.43npc21 dicdi ame: phosphatidylglycerol phosphatidyl... [more]
EWM21974.18.800e-4660.43MD-2-related lipid-recognition protein [Nannochlor... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03100.1NO13G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633256gene_8998Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100720g2gene8458Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03100.1NO13G03100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03100 ID=NO13G03100|Name=NO13G03100|organism=Nannochloropsis oceanica|type=gene|length=2718bp
AGTTTATTTCCTCTTCGCCAAGAAAATGAGCCACGAGGGGGGTACGGCTG
CAGGCCAGGCTTGCCTGCCCTCGCGTCATACCTTGGTGTGAGGAACGATG
GTGTACCAATGCCACAGTCATAGTACAATCATCGCCCTTGCTTAAGTCGC
TTGCATGATGGCCTTCAATACACACTGCTTTATGTGCACACGGTCCTCCG
CGGACGTCTTCTTTACCCCACCCTGATGCCTCTTCACCAGAAACGCTTGC
ACTTCTTGCCTTGCCCAAGGCCTTCAGGTACCATAGGCACGAGCATTTTG
ATTTTAAACATAAAACTGGAGTGAACAGACCTGTAATTTGGCGGTCCAGC
CAGGAATCGCATGCAGTGCCTTTACCAACCCGACCTCCCCAACTTCTTCC
CTCCGCCACAGGTCCCGTGGAGGCGCGCCTCGGCGCCATGCAGCCCTTCC
TCCTCCTCCTCCTCCTCTTCCAGGCGTCCGTTTCTACTCTGAGCCACGCA
CAAGAGCACCCCCTTCCTTTCAGTCTGTGCGGTCCCGACGCGCTGGGTCT
TGATTCAATTTCCCTGAACGAATGGCCTGTTGTCCCGGGAAAGGACGTGG
TCATCAAGGCGAGCTACACACCCAATGTGACCGTGACGGGTGGGAAAGCG
CTTGCTACAGgttggtccgggtaggaagacttagagaggaaggacagaat
ggagatggggagcgaaaggggagaggaaggggagaggaaggggggagggg
agaaagaattggcatgcggatcagagcggctaattagaaatttaattgtg
ttcgccctggagtaaacatagtacagaccaggaatttggataggcaacgg
gcaagaaaggtgagcccgatgtaatctctctcggctcaaccatgtcctcc
ttcctcccctccctccctccctttctccctccctccctcagTGCACGTCC
TCGGCATCCCCCTGACAGAGACCCGGGATATTTGCAACGAGCCCGGCGTA
AGATGTCCTTTAATTAAGGGCCAACCTACCACTACCATCCTTCGTGATCA
TGTGCCGAGCTTGACGCCCGGGCTTGGGGTGAGTGTGCGCGTGGAAATGT
ATGATGAGTCAGGCGAAAAGTTGATGTGTGTTGAGGTGCATGTCGATGTA
AAGACGCACCCCTTGATCGGGCTACCAGGATGGTTGAAGCCCTCGTCTTC
CTCATTTTCCACATTCGTGTCCTCTTCCTCATCCACGTCTTTCAATCATT
TGTTTTCGGCGTTGCCCGGACGGTCGACGGCGGCTTGGATGGGAGGGGGA
GGGCTGGGGAGGGGGATGGAGATGGCGATGGAACAGTATGTACGGTTACG
GTTGCCACTGATATCGACAGGAGCAGCAGATGCAGGAAAAAGAGATAAGC
GGGTAGGAATAGATGGAGGAGAAGGAGAGGAGGTAGGGCATGCATTGTTG
CGGCATGGGAGTGGTAGACGGGTGTAGAGAAAAACAAAATTATTGAAAAC
TATTGTGATGGCTTTTTGGCTACTGACGAAAATATCGGTGCACACATCCG
CAGAAAGTGAAATTGAAAGCATCGAAAGCATCGAAAGGAAGAGAAATCGA
TGGCGTTGCTTCTATTGATTGGTCGCATAGAGATGATTGGCAATTAGTGC
TTACCCAAGCTTCTACCCCATTGAGTGTCCAATAAGCCGGAGCCCGCCCA
TAGGGTGCGACTACATATGTGTTTTTACAAGAATGCTCACATTGCTCAAT
ACCTGCATTGAAACGACACGATACATACACACATGAGAAACAAACAAAAC
ATCACGAAGGTGCACATCGGGAAGCACAACGAAAAAAAGATAAAGCATCC
AAATCGGAGAAACGTGTAGAAGACGCATAAGCATAAACACACAAAAGCGA
ACTGTCGAACAAATACACTCTAAAATATGCCTGAAGCAGGTAGACGGCAT
TACTGGCATCTTGGAAATATGGCATCTTTATGGGGAGAAGACAGACGTGA
AGGGAAAACCATAACGGGTGCAAATGTCTTGGACTAGTAAATCGCTCCAA
GAAGGGGGAGTCGAAAAGCTCGGGATGAGCTTTCTATGCTTCACAATTTT
TGTGTGAGGTAGGCCGTTTCACACCTTGTTGCCGAACCTCTATAAAGTTG
TTCATGCCGACAAATATCCGTATTTTAAAAAAGTTATTGACTAACTTACG
ACGATTAGTTGTGAGATCGATCTTGACCCTGGCCTAGGTCTATTAGTACC
TCAATTTTTGGATGGGTCATTCGTTTCCATAAACGGGACTGACGGAATAG
ACTGCGGATGATAAGGTAGAGCGACATCGAACTTCCCAACATCCAATCCC
GTGAAATTTAACTCTAAAAGTTATGATACTCTAGAGAATTGAAGCGGGGT
ATATTTACAATCCTACTCAGTGGATAATTTCGAATTCTGTCACCAAGTGA
AGGACACCACGAATCACAGTAACGGTCATTCATGACGCTGGCAAGCACAG
CCAGCGTCCCAAGAGCCATAGGGTGGGTCATGGAATGCAAGCCCAATGAG
GGTCGATTAGATATTCCAGTATCTCGGGTCGGGCTATTTCAGGGAAGCTG
CTATATTGGAAGTTTTGTGGGGGATGTCGGCAGCGGATATCTACGTTGGT
AACACCAGGCATATGTGAAGCTCATAGCTTGAGAGTAGTTCAATGCCCAA
GGCTTGAGGGATGGCGAT
back to top

protein sequence of NO13G03100.1

>NO13G03100.1-protein ID=NO13G03100.1-protein|Name=NO13G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MQPFLLLLLLFQASVSTLSHAQEHPLPFSLCGPDALGLDSISLNEWPVVP
GKDVVIKASYTPNVTVTGGKALATVHVLGIPLTETRDICNEPGVRCPLIK
GQPTTTILRDHVPSLTPGLGVSVRVEMYDESGEKLMCVEVHVDVKTHPLI
GLPGWLKPSSSSFSTFVSSSSSTSFNHLFSALPGRSTAAWMGGGGLGRGM
EMAMEQYVRLRLPLISTGAADAGKRDKRVGIDGGEGEEVGHALLRHGSGR
RV*
back to top
Synonyms
Publications