NO13G03000, NO13G03000 (gene) Nannochloropsis oceanica

Overview
NameNO13G03000
Unique NameNO13G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length354
Alignment locationchr13:836629..836982 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:836629..836982 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G03000 vs. NCBI_GenBank
Match: EWM21962.1 (hypothetical protein Naga_101140g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 2.600e-32
Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 0 
Query:    6 TTENGGPRVADYFPRRPKACRGAADKFFACFSLKGEQQETALEGKAGADKEAGRRGLAECQKEMKGYDACMSKVLKGKGKDGQEKFFRVQEEYRLENVMKKGEADGGKR 115
            T+++G  RV D+FPR PKACR  A+KFFACFS KGEQ+ TALEGKAGADKEAGRRGLAECQKEMK YD CM+KV+KGKG  G++ FFRVQ+EYR EN+ + G   GG R
Sbjct:    2 TSQDGELRVGDHFPRHPKACRVPAEKFFACFSSKGEQRATALEGKAGADKEAGRRGLAECQKEMKAYDGCMAKVVKGKG-GGKDWFFRVQDEYRRENLKEGG---GGSR 106
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BLAST of NO13G03000 vs. NCBI_GenBank
Match: XP_005854999.1 (hypothetical protein NGA_2119800, partial [Nannochloropsis gaditana CCMP526] >EKU21364.1 hypothetical protein NGA_2119800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.1 bits (370), Expect = 3.400e-32
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 
Query:    4 TSTTENGGPRVADYFPRRPKACRGAADKFFACFSLKGEQQETALEGKAGADKEAGRRGLAECQKEMKGYDACMSKVLKGKGKDGQEKFFRVQEEYRLENVMKKG 108
            T T+++G  RV D+FPR PKACR  A+KFFACFS KGEQ+ TALEGKAGADKEAGRRGLAECQKEMK YD CM+KV+KGKG  G++ FFRVQ+EYR EN +K+G
Sbjct:   23 TMTSQDGELRVGDHFPRHPKACRVPAEKFFACFSSKGEQRATALEGKAGADKEAGRRGLAECQKEMKAYDGCMAKVVKGKG-GGKDWFFRVQDEYRREN-LKEG 124
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BLAST of NO13G03000 vs. NCBI_GenBank
Match: XP_008872094.1 (hypothetical protein H310_08201 [Aphanomyces invadans] >ETV99538.1 hypothetical protein H310_08201 [Aphanomyces invadans])

HSP 1 Score: 67.0 bits (162), Expect = 4.400e-8
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0 
Query:   13 RVADYFPRRPKACRGAADKFFACFSLKGEQQETALEGKAGADKEAGRRGLAECQKEMKGYDACMSKVLKGKGKDGQEKFFRVQEEYRL 101
            RV+ +FPR PKAC+   + FFAC    G+Q E        +D +AG++G+  C ++++ Y+AC+ KV   K +    K FRV E YR+
Sbjct:   12 RVSPHFPRVPKACKSVGETFFACLYKHGKQPEGV------SDPDAGKKGMQSCVRQLEAYNACVDKVFADKPR----KMFRVPEAYRV 89
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BLAST of NO13G03000 vs. NCBI_GenBank
Match: XP_008611250.1 (hypothetical protein SDRG_07208 [Saprolegnia diclina VS20] >EQC35500.1 hypothetical protein SDRG_07208 [Saprolegnia diclina VS20])

HSP 1 Score: 62.8 bits (151), Expect = 8.400e-7
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0 
Query:   13 RVADYFPRRPKACRGAADKFFACFSLKGEQQETALEGKAGADKEAGRRGLAECQKEMKGYDACMSKVLKGKGKDGQEKFFRVQEEYRLENVMKKGEA 110
            RV+ +FPR PKAC+  A+ FF C    G+Q E        +D +AG + +A C  +++ Y+ C+ + L  K K    K FRV E YR  + ++   A
Sbjct:   10 RVSPFFPRAPKACKAVAEPFFTCLHSHGKQPEGV------SDPDAGTKAMAICAAQLQAYNQCVDQALTNKPK----KLFRVPEAYRTLSTVRSSLA 96
The following BLAST results are available for this feature:
BLAST of NO13G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21962.12.600e-3269.72hypothetical protein Naga_101140g3 [Nannochloropsi... [more]
XP_005854999.13.400e-3272.12hypothetical protein NGA_2119800, partial [Nannoch... [more]
XP_008872094.14.400e-838.64hypothetical protein H310_08201 [Aphanomyces invad... [more]
XP_008611250.18.400e-735.05hypothetical protein SDRG_07208 [Saprolegnia dicli... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001590NSK001590Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03000.1NO13G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604868gene_9009Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101140g3gene8473Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03000.1NO13G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03000 ID=NO13G03000|Name=NO13G03000|organism=Nannochloropsis oceanica|type=gene|length=354bp
ATGGTACCCACATCCACCACTGAAAATGGTGGCCCGCGCGTCGCTGACTA
CTTTCCCCGCCGTCCCAAAGCTTGCCGTGGGGCGGCTGACAAATTTTTTG
CGTGCTTCTCCCTGAAGGGCGAACAGCAAGAGACGGCCCTCGAAGGCAAA
GCAGGTGCGGACAAGGAAGCGGGAAGGAGAGGCCTGGCAGAATGCCAAAA
GGAAATGAAAGGGTACGACGCGTGCATGTCCAAGGTGTTGAAGGGGAAGG
GGAAGGATGGGCAGGAGAAGTTCTTCCGGGTCCAGGAGGAATACCGGTTG
GAAAATGTGATGAAGAAGGGGGAGGCTGATGGAGGAAAGCGGGCGGGTCA
GTAA
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protein sequence of NO13G03000.1

>NO13G03000.1-protein ID=NO13G03000.1-protein|Name=NO13G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MVPTSTTENGGPRVADYFPRRPKACRGAADKFFACFSLKGEQQETALEGK
AGADKEAGRRGLAECQKEMKGYDACMSKVLKGKGKDGQEKFFRVQEEYRL
ENVMKKGEADGGKRAGQ*
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Synonyms
Publications