NO13G02930, NO13G02930 (gene) Nannochloropsis oceanica

Overview
NameNO13G02930
Unique NameNO13G02930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2901
Alignment locationchr13:815422..818322 +

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Properties
Property NameValue
DescriptionTLD-domain containing nucleolar protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:815422..818322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006571TLDc_dom
Homology
BLAST of NO13G02930 vs. NCBI_GenBank
Match: EWM21955.1 (TLDc [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 1.000e-50
Identity = 105/136 (77.21%), Postives = 117/136 (86.03%), Query Frame = 0
Query:  499 MYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLDGCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHGKREQMGRD 635
            MYLNLKGFSLPHGLGVGGS+D GFRLWIPESL+GCVAG RD +F WGPL G  G G  GGREGEF+MEGLEVWGVGGEE I AA +AQG AR + A+ IA+AR+VDKSKF+DN+FDKEFLLGKTFG GKRE+ GRD
Sbjct:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLAGKTGGG-KGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: XP_002999247.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69393.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 209.9 bits (533), Expect = 2.300e-50
Identity = 129/294 (43.88%), Postives = 173/294 (58.84%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +           PS     P+L   S ILS  H    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L  G           +F ++ +EVWG GGEE   + +  + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  179 SSDDFVRWIGSQFPLLYTIFMSWMARKSFESL--------TKPSYE--APQLSHTSGILSRSH-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSSG----------EQFVIDAMEVWGCGGEE---SDLRQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 442          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: ETK89353.1 (hypothetical protein L915_06574 [Phytophthora parasitica] >ETM49126.1 hypothetical protein L914_06486 [Phytophthora parasitica] >ETO78088.1 hypothetical protein F444_06769 [Phytophthora parasitica P1976] >ETP47187.1 hypothetical protein F442_06737 [Phytophthora parasitica P10297])

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-50
Identity = 126/294 (42.86%), Postives = 172/294 (58.50%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +                  P+L  +S ILS  +    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L              +F ++ +EVWG GGEE   + +S + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  179 SSDDFVRWVGAQFPLLYTIFMSWMARKCFESL----------TKASYEAPQLSHKSGILSRSY-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSS----------SEQFVIDAMEVWGCGGEE---SELSQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 442          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: ETL95932.1 (hypothetical protein L917_06383 [Phytophthora parasitica])

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-50
Identity = 126/294 (42.86%), Postives = 172/294 (58.50%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +                  P+L  +S ILS  +    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L              +F ++ +EVWG GGEE   + +S + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  179 SSDDFVRWVGAQFPLLYTIFMSWMARKCFESL----------TKASYEAPQLSHKSGILSRSY-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSS----------SEQFVIDAMEVWGCGGEE---SELSQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 442          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: XP_008892305.1 (hypothetical protein PPTG_02791 [Phytophthora parasitica INRA-310] >ETN23107.1 hypothetical protein PPTG_02791 [Phytophthora parasitica INRA-310])

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-50
Identity = 126/294 (42.86%), Postives = 172/294 (58.50%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +                  P+L  +S ILS  +    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L              +F ++ +EVWG GGEE   + +S + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  179 SSDDFVRWVGAQFPLLYTIFMSWMARKCFESL----------TKASYEAPQLSHKSGILSRSY-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSS----------SEQFVIDAMEVWGCGGEE---SELSQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 442          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: ETI49355.1 (hypothetical protein F443_06702 [Phytophthora parasitica P1569])

HSP 1 Score: 208.4 bits (529), Expect = 6.600e-50
Identity = 125/294 (42.52%), Postives = 172/294 (58.50%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +                  P+L  +S ILS  +    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L              +F ++ +EVWG GGEE   + ++ + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  178 SSDDFVRWVGAQFPLLYTIFMSWMARKCFESL----------TKASYEAPQLSHKSGILSRSY-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTIIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSS----------SEQFVIDAMEVWGCGGEE---SELNQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 441          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: ETL42684.1 (hypothetical protein L916_06513 [Phytophthora parasitica] >ETP19128.1 hypothetical protein F441_06705 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 208.4 bits (529), Expect = 6.600e-50
Identity = 126/294 (42.86%), Postives = 171/294 (58.16%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +                  P+L  +S ILS  +    L+  +  LQ   +RLYTS ++GLSFNR+ +HILGY GPT+  +RDT GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD       +  +FE G L              +F ++ +EVWG GGEE   + +S + H R   A++I +ARKVDK++F+ N+FDKE  LGKTFGHG
Sbjct:  179 SSDDFVRWVGAQFPLLYTIFMSWMARKCFESL----------TKASYEAPQLSHKSGILSRSY-FVALSTVTTSLQTPLSRLYTSAQDGLSFNRLSYHILGYSGPTLTTIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPEIAIYRVSASGANE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDENSYTTAKCLSFEPGRLSS----------SEQFVIDAMEVWGCGGEE---SELSQKAH-RQETADLINRARKVDKAQFVGNDFDKEMFLGKTFGHG 442          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: XP_009518922.1 (hypothetical protein PHYSODRAFT_556294 [Phytophthora sojae] >EGZ23634.1 hypothetical protein PHYSODRAFT_556294 [Phytophthora sojae])

HSP 1 Score: 204.9 bits (520), Expect = 7.300e-49
Identity = 127/294 (43.20%), Postives = 175/294 (59.52%), Query Frame = 0
Query:  334 SFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLDGCVAGT-RDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            S D+F  W    FPLLY  F ++M  + F +           PS     P+L   S ILS  H    L+  +  +Q + +RLYTS ++GLSFNR+ +HILGY GPT+ ++RDT GAVFG F +  WKES+ ++G + CFLFR++P     R  ASG  +    +YMYLN KGF+LP GLG+GGS D  FRL++ E LD     T +  +FE G L              +F ++ +EVWG GGEE   + +S + H R   A++I +ARKVDK++F+ ++FDKE  LGKTFGHG
Sbjct:  184 SSDDFVRWIGSQFPLLYTIFMSWMVRKSFESL--------TKPSFE--APKLSHPSGILSRSH-FVALSTVTTSIQTSLSRLYTSAQDGLSFNRLSYHILGYSGPTLTVIRDTQGAVFGMFCDTEWKESSRYYGGNGCFLFRMAPEINIYRVSASGTNE----NYMYLNSKGFALPRGLGMGGSTD-KFRLFLSEDLDEHSYTTPKCLSFEPGRLSS----------SEQFVVDTIEVWGCGGEE---SELSQKAH-RQETADLINRARKVDKAQFVGSDFDKEMFLGKTFGHG 447          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: CCA14756.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 203.0 bits (515), Expect = 2.800e-48
Identity = 128/326 (39.26%), Postives = 180/326 (55.21%), Query Frame = 0
Query:  313 ASSLTSSPSEFSITE-------EEEPAVSFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFG-LALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHGKRE 630
            A+  TSS +    TE            V  DEF  W T + PL Y   + +M  ++                +  + P L  RS I+S     FG L+  + +LQG   R+YTS E+GLSFNR+C H+LGY G T++L++D  GAVFG F +  WKES+ FFG + CFLFR  P  + I    + +  G   ++MYLN KGFSLP GLG+GG +   FR+++ E  D  C +  R  ++E GPL            + +F +  LEVWG GGEE   + +  + H +D  A++IA ARKVDK++F+ N+FDKE  LG+TFGHG  +
Sbjct:  140 ANDTTSSSAFTEATEALTSALMSNNDLVQSDEFVQWITSTLPLFYSVISTWMSLKVLGTF----------AKVSYSAPTLTHRSEIISDPQ--FGLLSCVTTHLQGNIDRIYTSTEDGLSFNRLCFHLLGYSGQTLILIQDVQGAVFGAFCDTEWKESSRFFGGNGCFLFRFKPD-IHIYRAVTANQSG---NHMYLNTKGFSLPRGLGLGGDLT-EFRVYLNEDFDENCYSTMRCLSYESGPLSS----------QTQFSIASLEVWGCGGEE---SKLDQKAHRQD-TADMIAHARKVDKAQFIGNDFDKEMFLGRTFGHGANQ 434          
BLAST of NO13G02930 vs. NCBI_GenBank
Match: XP_024579476.1 (Uncharacterized conserved protein, contains TLDc domain [Plasmopara halstedii] >CEG43107.1 Uncharacterized conserved protein, contains TLDc domain [Plasmopara halstedii])

HSP 1 Score: 201.8 bits (512), Expect = 6.200e-48
Identity = 127/295 (43.05%), Postives = 168/295 (56.95%), Query Frame = 0
Query:  333 VSFDEFYVWATESFPLLYQPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLD-GCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHG 627
            VSF EF  W     PLLY  F  ++  + F +           PS     P L  +S ILS  H    L++ +  LQ    RLYTS ++GLSFNR+ +HILGY GPT+ ++RD  GAVFG F +  WKES+ ++G + CFLFRL+P     R  ASG  +    +YMYLN KG++LP GLG+GGS D  FRL++ E LD       +  +FE G L               F ++ +EVWG GG+E    +   Q   R   AE+I +ARKVDK++F+DN+FDKE  LGKTFGHG
Sbjct:  179 VSFIEFVQWTELQLPLLYTVFTTWIAQKCFESL--------TKPSYE--APRLSPKSEILSRSH-FVALSMVTTSLQRTLNRLYTSTQDGLSFNRLSYHILGYSGPTLTVIRDVQGAVFGMFCDTEWKESSRYYGGNGCFLFRLAPDINICRVSASGINE----NYMYLNSKGYALPRGLGMGGSTD-KFRLFLSEDLDEQSYTIAKCLSFEPGRL----------SFNEHFVIDVMEVWGCGGDE----SEHNQEKHRLETAELINRARKVDKAQFIDNDFDKETFLGKTFGHG 443          
The following BLAST results are available for this feature:
BLAST of NO13G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21955.11.000e-5077.21TLDc [Nannochloropsis gaditana][more]
XP_002999247.12.300e-5043.88conserved hypothetical protein [Phytophthora infes... [more]
ETK89353.13.000e-5042.86hypothetical protein L915_06574 [Phytophthora para... [more]
ETL95932.13.000e-5042.86hypothetical protein L917_06383 [Phytophthora para... [more]
XP_008892305.13.000e-5042.86hypothetical protein PPTG_02791 [Phytophthora para... [more]
ETI49355.16.600e-5042.52hypothetical protein F443_06702 [Phytophthora para... [more]
ETL42684.16.600e-5042.86hypothetical protein L916_06513 [Phytophthora para... [more]
XP_009518922.17.300e-4943.20hypothetical protein PHYSODRAFT_556294 [Phytophtho... [more]
CCA14756.12.800e-4839.26conserved hypothetical protein [Albugo laibachii N... [more]
XP_024579476.16.200e-4843.05Uncharacterized conserved protein, contains TLDc d... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001600NSK001600Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02930.1NO13G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633269gene_9016Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101377g1gene8479Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02930.1NO13G02930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02930 ID=NO13G02930|Name=NO13G02930|organism=Nannochloropsis oceanica|type=gene|length=2901bp
ATGGGCGTCACAACCAGCTTCCCCGCCGGCGGAGCCGAGGGCATCCGCCC
CAAACTCCAGAGCGACAAAAGCAGCATGTTAGGGCATTTATTGCACGGCT
TTTCCCATCATCCTGACGTGATTGTCAATAAAGGTCCGTTTACCGATGCG
GAATACGAGCGGCTATGTGATATCTTTCGTCATTTCGCTTCGTCGTCTTG
CTCTTCGGGTCAAGGAGGAGGAAAGAAGGGAGGAAGGAAGGGTAAGCAGG
CAGTGAGAATGACGAAGGAGGGGTTCTTAAAATTATTTGGCGTCAGGAGT
GAAGAGAACTGGGCGCCGGCGCTGTTTGATGTTTTCAAAGAAATGGGAAG
AGCAGCAGCAGCAGCATCAGCAGTAGCATCAGCAGTAGCAGATGCATATG
GAGAAGAAGACCAAACGGAAGCAGTGAAGGAGAAGGAGGAGGAAGATGAG
GAGGAGGGAAGGTTAGAAGCCAGCCTCAGTTTTGATGAGTTTTTCCAGGG
GGTGTCAGGGTGCACCCGAGCTTCAGATCGGTCGATCCTCCAGGTGGTAT
TTCAGGTGATGTGCTTGTTGGGGGAAGAGGGGGAAGGAGGGGAGGGAGGG
AAGGATGAAGGGGCAGCTGAAGGAGCCGTATCGAATGGAGCGCCTCTTCT
CTCCTACACCTGCCTGAAGGAAGTCATTCGCCTTGCCTACCAATGCCACC
TCCTATCCTCTCCCGCTCCTGTTGTCCCTCCTTCGGGCCCTCCTTCCTCA
GCGTCCTCCACCTCTACATCGCCTCGTCCTCCCACTTCTCCTACTCCTCC
TACTCCTACTCCTACTCCTCCTACTCATGTCCTCACTTTCGATACGACTC
TCTTCCACCACCCGCTCATCCGAGACCATAACATTCCCCCTCCCACCTCC
TCCTTCCACCCTGCTATGCCCTCCTTGCCCTCCTTCGCTTCCTCCCTCAC
TTCCTCGCCCTCTGAATTCTCCATCACTGAAGAGGAAGAGCCGGCCGTTT
CTTTCGACGAATTTTACGTATGGGCCACAGAGTCGTTCCCTCTCCTTTAT
CAACCCTTTGCTGCATTCATGTATTCGCGTCTTTTTGCCAACTGTGAGAT
GGGTGTCCCCCCCCTGCCCCTCCCCCCCTCCCTCCGCCTCGCCCTTCCCG
AGCTCTTGAGCCGTTCCTACATCCTAAGCTCTGAGCACTCCCTGTTTGGA
CTGGCCCTTGCTTCGCCCTATCTGCAAGGGGCATGGACGAGGCTTTACAC
GAGTGAGGAGAATGGGCTGAGTTTTAACAGAATCTGTCATCATATTCTTG
GCTACCGAGgtaagcattgagggcgggcattacaccttccttccctccct
ccctccttcactccctcctcgtctgtctcccccaccttccttctctattt
cgtattttgcattctctttcttcttcttttctttctttagtcagagaatg
taacagagtcgagtgtaatcattaatcagattctctctcttttctaatca
atcgaaaatacgctacccagGTCCCACCGTCCTTCTCCTCCGCGACACCA
CCGGCGCCGTCTTCGGTTTCTTTACCAACGACACGTGGAAGGAGAGCAAC
TCCTTCTTCGGCTCCTCAGAATGCTTCCTCTTCCGCCTTTCTCCCTCCTT
TGTGGAGATACGCCCCAAGGCTAGCGGGCACGGGCAAGGCGGGGCGAAGC
ACTATATGTACCTTAATCTGAAAGGTTTCTCGTTGCCGCATGGACTGGGG
GTAGGAGGGAGCATCGATGGTGGGTTTAGGCTGTGGATCCCGGAGAGTTT
GGATGGTTGCGTGGCCGGCACTCGGGACGGTACGTTCGAGTGGGGGCCTC
TGGGAGGAGGGGGGGGAAGGGGGATGGATGGAGGGAGGGAGGGCGAGTTT
GATATGGAGGGATTGGAGGTGTGGGGGGTAGGGGGGGAGGAGAGGATTGG
GGCAGCGGTAAGTGCGCAGGGTCATGCGCGGGATCTGCGGGCAGAGATCA
TTGCGAAAGCTCGCAAGGTGGACAAGAGCAAATTTCTAGACAACGAATTC
GACAAGGAATTTTTGCTGGGCAAAACCTTTGGACATGGGAAACGGGAGCA
AATGGGAAGGGACTGAGGAAGAAGTAAAGGAAGTCTTGTCCTTCTCTCTC
TGTTACACGACAGGCTGCCTGTCATGTGTGTATATATACATACGAGTTTT
TTTTTTCAACTACATAAACGGGTTGTCGTCCGCGGGGAGGGCACGAGAAA
GTCTCTGCCTGTCGTGTCGTGTACCTTCATCGTGCCTCTCTTCTCTCTCA
ACGGTTTAGCCTTCTGATACAGCATCATATCTGGCGGAAGGGGGAAACAT
TGTGATACAAGAGCAAATCCTGCGAAACAAGAGCAAATCATGCACCATAA
AAGGTTCCGCGGAGGCGACTCTGGTGGGACCGACGCAATCGCATGTCTTT
TTTTTTCGAATGTACTTGAATTCCCCGTCGAGAAATGTCAGCATCCAATT
CATCACCATCGAAATCTCTGTTTTGGGACAAGAACCAGCGCCGAATTCCT
TTCTATAATACCCCTCTTCGTAGGAGACTCTTTTTTTGTCTTGATGGCTC
GTATTGAGGGGAGGCGAAACGGGAGGCATAGAGGCATGGAAAAGAGAATA
GAGAGTTGGCAGACGAAGAAACGAGAAAGAAGTAGTCGAGCCTCGAAAAA
GTTGCGAAGCACATTCGCCGCCTCGTGTCACGTGGAGGGAGAAGGGAAAG
AAGAGCGACAGTGCGTAAAGACAGATTTGACTTTTTGAAAAGTAAGACCA
GCACGCACCAAAATACACGTAGAGCGGGGGAATTAAGACCATTGACAGGC
TCCTAGAGCCAAAATGTACAAAAGAGAAAGAAGTGGAAGAATGAGGAAGA
A
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protein sequence of NO13G02930.1

>NO13G02930.1-protein ID=NO13G02930.1-protein|Name=NO13G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MGVTTSFPAGGAEGIRPKLQSDKSSMLGHLLHGFSHHPDVIVNKGPFTDA
EYERLCDIFRHFASSSCSSGQGGGKKGGRKGKQAVRMTKEGFLKLFGVRS
EENWAPALFDVFKEMGRAAAAASAVASAVADAYGEEDQTEAVKEKEEEDE
EEGRLEASLSFDEFFQGVSGCTRASDRSILQVVFQVMCLLGEEGEGGEGG
KDEGAAEGAVSNGAPLLSYTCLKEVIRLAYQCHLLSSPAPVVPPSGPPSS
ASSTSTSPRPPTSPTPPTPTPTPPTHVLTFDTTLFHHPLIRDHNIPPPTS
SFHPAMPSLPSFASSLTSSPSEFSITEEEEPAVSFDEFYVWATESFPLLY
QPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFG
LALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAV
FGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMY
LNLKGFSLPHGLGVGGSIDGGFRLWIPESLDGCVAGTRDGTFEWGPLGGG
GGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKA
RKVDKSKFLDNEFDKEFLLGKTFGHGKREQMGRD*
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Synonyms
Publications