NO13G02900, NO13G02900 (gene) Nannochloropsis oceanica

Overview
NameNO13G02900
Unique NameNO13G02900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr13:807270..808238 +

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Properties
Property NameValue
DescriptionThioredoxin-like protein 4a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:807270..808238 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0046540U4/U6 x U5 tri-snRNP complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR004123mRNA_splic_U5
Homology
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: EWM21942.1 (thioredoxin-like protein 4a [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.300e-74
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0 
Query:   73 LLSIPQMSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            LL   +MSYMLPHLRSGWAVDQAILNEE+KVVVIRFGHDENETCMQMDE+LYKISEDVRNFAAIYLVDT+EV DFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLI+DKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY
Sbjct:   35 LLPSGKMSYMLPHLRSGWAVDQAILNEENKVVVIRFGHDENETCMQMDEILYKISEDVRNFAAIYLVDTTEVPDFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLISDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 182
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: GAY01244.1 (thioredoxin-like protein 4A [Pythium insidiosum])

HSP 1 Score: 250.0 bits (637), Expect = 6.900e-63
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSY+LPHLRSGWAVDQAILNE  +VVVIRFGHD + TCMQMDEVL  ++EDV+NFAAIY+VD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+  N+KQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYLLPHLRSGWAVDQAILNEGDRVVVIRFGHDHDPTCMQMDEVLXGVAEDVKNFAAIYVVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: GAY01664.1 (thioredoxin-like protein 4A [Pythium insidiosum])

HSP 1 Score: 249.6 bits (636), Expect = 9.000e-63
Identity = 118/142 (83.10%), Postives = 129/142 (90.85%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSY+LPHLRSGWAVDQAILNE  +VVVIRFGHD + TCMQMDEVL  ++EDV+NFAAIY+VD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+  N+KQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYLLPHLRSGWAVDQAILNEGDRVVVIRFGHDHDPTCMQMDEVLCGVAEDVKNFAAIYVVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: XP_011224704.2 (PREDICTED: thioredoxin-like protein 4A isoform X1 [Ailuropoda melanoleuca])

HSP 1 Score: 248.8 bits (634), Expect = 1.500e-62
Identity = 123/161 (76.40%), Postives = 136/161 (84.47%), Query Frame = 0 
Query:   66 LSPIP-PSLL-----SIPQMSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            LSP+P P        S P+MSYMLPHL +GW VDQAIL+EE +VVVIRFGHD + TCM+MDEVLY I+E V+NFA IYLVD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:  195 LSPVPLPGFSSQTPGSAPEMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 355
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: ODM95739.1 (Thioredoxin-like protein 4A [Orchesella cincta])

HSP 1 Score: 248.1 bits (632), Expect = 2.600e-62
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSYMLPHL +GW VDQAIL+EE +VV+IRFGHD + TCM+MDEVLY I+E V+NFA +YLVD SEV DFN MYELYD CTCMFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVIIRFGHDWDPTCMKMDEVLYGIAEKVKNFAGVYLVDISEVPDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: XP_021958048.1 (thioredoxin-like protein 4A [Folsomia candida] >OXA50495.1 Thioredoxin-like protein 4A [Folsomia candida])

HSP 1 Score: 247.7 bits (631), Expect = 3.400e-62
Identity = 115/142 (80.99%), Postives = 129/142 (90.85%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSYMLPHL +GW VDQAIL+EE +VVVIRFGHD + TCM+MDEVLY I+E V+NFA +YLVD S+V+DFN MYELYD CTCMFFFRNKHIMIDLGTGNNNKIN+ + DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYGIAEKVKNFAVVYLVDISQVSDFNKMYELYDPCTCMFFFRNKHIMIDLGTGNNNKINWALEDKQEMIDILETVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: KFO37224.1 (Thioredoxin-like protein 4A [Fukomys damarensis])

HSP 1 Score: 247.3 bits (630), Expect = 4.500e-62
Identity = 116/144 (80.56%), Postives = 129/144 (89.58%), Query Frame = 0 
Query:   77 PQMSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            P+MSYMLPHL +GW VDQAIL+EE +VVVIRFGHD + TCM+MDEVLY I+E V+NFA IYLVD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+ + DKQEM+DIIETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:  191 PRMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 334
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: XP_008419697.1 (PREDICTED: thioredoxin-like protein 4A [Poecilia reticulata])

HSP 1 Score: 245.7 bits (626), Expect = 1.300e-61
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSYMLPHL +GW VDQAIL+EE +V+VIRFGHD + TCM+MDEVLY I+E V+NFA IYLVD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN++I DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVLVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTAMFFFRNKHIMIDLGTGNNNKINWIIEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: XP_024586093.1 (thioredoxin-like protein 4a [Plasmopara halstedii] >CEG49724.1 thioredoxin-like protein 4a [Plasmopara halstedii])

HSP 1 Score: 245.7 bits (626), Expect = 1.300e-61
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSY+LPHL SGWAVDQAILNE  +VVVIRFGHD + TCMQMDEVL  I+EDV+N+AAIY+VD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN+  N+K+EMIDIIETVYRGARKGRGLV+SPKDYST+YRY
Sbjct:    1 MSYLLPHLESGWAVDQAILNEGDRVVVIRFGHDHDSTCMQMDEVLCGIAEDVKNYAAIYVVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKEEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 142
[Close]
BLAST of NO13G02900 vs. NCBI_GenBank
Match: XP_005812248.1 (thioredoxin-like protein 4A [Xiphophorus maculatus])

HSP 1 Score: 245.4 bits (625), Expect = 1.700e-61
Identity = 115/142 (80.99%), Postives = 128/142 (90.14%), Query Frame = 0 
Query:   79 MSYMLPHLRSGWAVDQAILNEESKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVMYELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRGARKGRGLVVSPKDYSTRYRY 221
            MSYMLPHL +GW VDQAIL+EE +V+VIRFGHD + TCM+MDEVLY I+E V+NFA IYLVD +EV DFN MYELYD CT MFFFRNKHIMIDLGTGNNNKIN++I DKQEMIDI+ETVYRGARKGRGLVVSPKDYST+YRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVLVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWIIEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142
The following BLAST results are available for this feature:
BLAST of NO13G02900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21942.12.300e-7493.92thioredoxin-like protein 4a [Nannochloropsis gadit... [more]
GAY01244.16.900e-6383.10thioredoxin-like protein 4A [Pythium insidiosum][more]
GAY01664.19.000e-6383.10thioredoxin-like protein 4A [Pythium insidiosum][more]
XP_011224704.21.500e-6276.40PREDICTED: thioredoxin-like protein 4A isoform X1 ... [more]
ODM95739.12.600e-6280.99Thioredoxin-like protein 4A [Orchesella cincta][more]
XP_021958048.13.400e-6280.99thioredoxin-like protein 4A [Folsomia candida] >OX... [more]
KFO37224.14.500e-6280.56Thioredoxin-like protein 4A [Fukomys damarensis][more]
XP_008419697.11.300e-6180.99PREDICTED: thioredoxin-like protein 4A [Poecilia r... [more]
XP_024586093.11.300e-6180.99thioredoxin-like protein 4a [Plasmopara halstedii]... [more]
XP_005812248.11.700e-6180.99thioredoxin-like protein 4A [Xiphophorus maculatus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02900.1NO13G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604923gene_9019Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100157g1gene8481Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02900.1NO13G02900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02900 ID=NO13G02900|Name=NO13G02900|organism=Nannochloropsis oceanica|type=gene|length=969bp
TGTTACTACCTCGATCTTACTAAGGTAAGCCAAAGACCTCTGCTGGCACC
ACAACTACGGGATCATTCCTGCTACCGCGTGCCGACAGACAGAAAGCAGG
AATTTCTCAGTGTGTGGACGGGGAGATGCGTGACTGTGGCGGCACAGAGA
ATGCTTGCCTCCTCACCATTATCCTCATAATCATCTCTTTTCGATCAACA
AACTTCCGCCCTTTCTATCCTTCCCGTCCTGTCATTTTCTTCCCAGACAT
GCACAGAAACGCAGTTTGGGGTCTTCTATCTGTATATCCTTGCCTCCTCT
TGAGCGCATTCACTCCGCATCTCTCACCCATCCCTCCCTCCCTTCTCTCC
ATCCCTCAGATGTCGTACATGCTTCCTCACCTCCGTTCCGGCTGGGCCGT
GGACCAAGCCATTCTTAACGAAGAAAGCAAGGTGGTGGTAATTCGATTCG
GGCACGATGAGAACGAGACGTGCATGCAGATGGATGAAGTCCTATACAAG
ATTAGTGAGGACGTGCGGAACTTCGCGGCGATCTATCTTGTGGACACCTC
AGAGgtgagctccccctccctccttcctggctcaagaaagaagatctggg
tacattcaacaccaaactgagaggatgttcggttttggtcacgtaaaatt
gttatgtagccgttgacgcatccgcccctcccacacatgtaatatatata
tgtatgtatacatacatatgcatctataaacacagGTAGCGGACTTCAAC
GTCATGTACGAGCTGTACGACGAGTGCACTTGCATGTTTTTCTTTCGTAA
CAAGCATATCATGATTGACCTCGGCACAGGAAACAACAACAAGATCAACT
TTCTGATCAATGACAAGCAGGAGATGATCGACATAATCGAAACGGTCTAC
AGAGGGGCCCGTAAAGGCAGGGGGCTGGTCGTCTCGCCCAAGGACTACTC
GACGCGTTATCGATACTAA
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protein sequence of NO13G02900.1

>NO13G02900.1-protein ID=NO13G02900.1-protein|Name=NO13G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRDCGGTENACLLTIILIIISFRSTNFRPFYPSRPVIFFPDMHRNAVWGL
LSVYPCLLLSAFTPHLSPIPPSLLSIPQMSYMLPHLRSGWAVDQAILNEE
SKVVVIRFGHDENETCMQMDEVLYKISEDVRNFAAIYLVDTSEVADFNVM
YELYDECTCMFFFRNKHIMIDLGTGNNNKINFLINDKQEMIDIIETVYRG
ARKGRGLVVSPKDYSTRYRY*
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Synonyms
Publications