NO13G02840, NO13G02840 (gene) Nannochloropsis oceanica

Overview
NameNO13G02840
Unique NameNO13G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2981
Alignment locationchr13:790814..793794 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:790814..793794 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02840 vs. NCBI_GenBank
Match: XP_005852773.1 (hypothetical protein NGA_0685000 [Nannochloropsis gaditana CCMP526] >EKU23055.1 hypothetical protein NGA_0685000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.9 bits (276), Expect = 2.000e-20
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 0 
Query:   44 SLAQTHKRHPLRKAVCRIYSWMDVFIDYLESV-VNKNTVVSYFVSLALLLGFDDDTAQRKSKY----KEIRVAEQRMSLKDTAPCTLDIRAEVKRFHDAVGEMREEIEKERRNAITNGRTNFVGKRFSSPCKHLGAFLTAVEGRLDEE 187
            +L+Q H  HPLRK V ++Y WM  F++ L  + + ++TV SYF +LALLLG+ D    +  +Y    +E    E++MSLKD AP TL    +V++F DAV E+RE I+ +RR+A    R+++ GKR++  CKHL +FL A + +L  E
Sbjct:    8 ALSQLHPSHPLRKEVFKVYKWMGNFLESLRPLDLAESTVASYFKALALLLGYRDREQGKSRRYAPMGEEEAATEEKMSLKDDAPVTLTDIGDVRKFSDAVAELREYIQ-QRRDA-RGLRSDYAGKRYTPVCKHLASFLAATQRKLIAE 153
[Close]
BLAST of NO13G02840 vs. NCBI_GenBank
Match: EWM21950.1 (hypothetical protein Naga_100157g8 [Nannochloropsis gaditana])

HSP 1 Score: 110.5 bits (275), Expect = 2.600e-20
Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = 0 
Query:   16 AIPAADGLPPLIRPHLVKKKTKMGRKIT--------SLAQTHKRHPLRKAVCRIYSWMDVFIDYLESV-VNKNTVVSYFVSLALLLGFDDDTAQRKSKY----KEIRVAEQRMSLKDTAPCTLDIRAEVKRFHDAVGEMREEIEKERRNAITNGRTNFVGKRFSSPCKHLGAFLTAVEGRLDEE 187
            A  A   +  ++ P   K +T+   K T        +L+Q H  HPLRK V ++Y WM  F++ L  + + ++TV SYF +LALLLG+ D    +  +Y    +E   AE++MSLKD AP TL    +V++F DAV E+RE I+ +RR+A    R+++ GKR++  CKHL +FL A + +L  E
Sbjct:   12 AFKAPPVVAAIVTPAHRKPRTRNPPKTTVMNRLPRPALSQLHPSHPLRKEVFKVYKWMGNFLESLRPLDLAESTVASYFKALALLLGYRDREQGKSRRYAPMGEEEAAAEEKMSLKDDAPVTLTDIGDVRKFSDAVAELREYIQ-QRRDA-RGLRSDYAGKRYTPVCKHLASFLAATQRKLIAE 193
The following BLAST results are available for this feature:
BLAST of NO13G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852773.12.000e-2042.57hypothetical protein NGA_0685000 [Nannochloropsis ... [more]
EWM21950.12.600e-2038.59hypothetical protein Naga_100157g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001607NSK001607Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02840.1NO13G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100157g8gene8487Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02840.1NO13G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02840 ID=NO13G02840|Name=NO13G02840|organism=Nannochloropsis oceanica|type=gene|length=2981bp
AGGATCGCAGACCGGGAGAATCATTTGCTGTGCTGGCGTGCATTCGCTGT
GTGTTTGCAGCCTTTCTTCCCCCAACACTATCATCTTTTGTCATCCGCTG
TAGAGATTGATAACAAGTCAGATTTCTTGTGCCAGACACACTAGACCACC
GCTAAGCGGCATCTGAAGCCAAGTCGGTAGTACCAATCGCACCATGGATG
CCGCATCTGCTTCTGTTGCGGCGGCTGATGTACCTGCCGCAATCCCCGCG
GCGGATGGACTCCCACCGCTTATCCGGCCGCATTTAGTTAAGAAGAAGAC
TAAGATGGGACGCAAGATTACAAGCCTGGCCCAGACACACAAGAGACATC
CCTTGAGAAAAGCTGTGTGCAGAATCTACTCATGGATGGACGTCTTCATT
GATTATCTTGAAAGTGTTGTGAACAAGAACACGGTGGTGAGTTACTTCGT
TTCCTTGGCGCTTTTGCTGGGCTTCGACGATGACACGGCACAGAGGAAGA
GTAAATACAAAGAAATCAGAGTTGCAGAACAGAGGATGAGCTTAAAAGAT
ACTGCGCCGTGCACGCTCGACATTCGCGCGGAAGTCAAGCGGTTTCATGA
TGCTGTGGGCGAGATGCGAGAAGAGATAGAGAAGGAGCGGCGCAACGCCA
TCACAAACGGGAGGACCAACTTTGTGGGCAAGAGGTTTTCGTCCCCGTGT
AAGCATTTGGGTGCCTTTTTGACGGCAGTAGAGGGGAGATTGGACGAGGA
GCAATATGCGAGGGGAGGGATGGGTGGTGGTGCCGGTGAAGGAGGAGGAG
GAAAAGGAGGAGGAGATGGGGGTGGTATTGGTTCTCTGATTGGGATGGGC
CTTGGGCGTACACCGGGGCAGAAATGGAAGCAGGCCGGTAACAGCATCAG
CAGCGACAATGGCAGTGGTGGCTCAGGTGGTTGCGGTGGAGCTGGAGGGG
GAGGAGGAGAGGGTGTAGGAGGGGAAGGAGATGTGTCGTCCTTCGGGCCG
AGACAAGGGAAAGAGGACAATAGCAGCAGCAACAAGAAACAGAGGACGGT
TTCAACCCTAAGTAACAATAGCAACACTAGTGGCAGAAAGGATGACACCG
ATGACGAGGTGCAGGTAATTGAATCCGAAGTTAATCAAAAGCAGCACCAG
TACCAGCATCAGCACGAGCAGTACCAGCAGTACCAGCAGTACCAGCAACA
ACAACATCAGTATCAGCAGCACCGACAGCAAGGGGGGAAAGTGGTAAACG
ACGGGGTGGAGAGACGAGGAAAAGGAGACGACGAGGAGGAGGAGGACGAG
GAGGAAGAAGAGGAGGGGTTGGGGGAGAAGGAGAAAGCGAATGAGACGAA
ACAACAAAACAAAAAGGTCAAGAAGACCAGCGCTTTGAAGCGAGAGAACA
AGGAGTTGAAAGCGCTGGTCACGAGCTTGCAAAAGAGCTTGGACAAGAAG
AGGAAGAAGGTTGCCAGGCTGGAGGAGAGCATGGCAGAGGCCCTTGAGGA
AGCGAAGAAGAAGGTTGCGAGGTTAGAGAAGGATGCGGCAGATGCCAAGG
AGGAAGCGAAGCAAGCAATGGAGAAGCTGGAGGAGAGACTGAGAGATGAG
GTGGACTATCACCGACGGCAGGGGCAGAAGAAGCAGCAGCAGCAGCAGCA
GCACGGACGGGGGAAGGAGCTGCGATTGTCCTTGCCCCCCTTACCGCCGC
CCATCGTAGGGCCTCCACCACCACCTCCTCCTCCTCCACCTCCACCTCCT
CTTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTTCTTCTTCTTCTTCTTC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCGG
CTTCCTCCTCTTCTCCCCCTGCGCCGTCAACAAGTCCGCCCTCTTCTCCC
TCCTCTTCATCCTCCGCCCCACATGCCCCTCGACCTTCCAAGTCGTCTCT
TCGCATGCCTTCAGTCCCCGCTGCAACAACCGTTTCATGCACATCAGCAT
TTGCGGTTGCAGTCACAGCAGCAACAACAGCAGGGAAAATACCCGCTCCC
CCGCCGCCGTCTTGCTCCTCTTCTTCGGCCTCTGCCTCGTCGTTGCCGAC
GGCATCCTCCTCCTTGCGGTCACTGCCGCCGTCGTCCCGTCCGTCGCTTC
ATTTGCAAGAACCGCAACAGCAACAGCAGCAGCAGCAGGAGTTGCCGGGC
AAGAAGAAATTCCCTCCTAAGAAACCCCAGGAGATCCAAGAAAAGAAGCA
GCGGAGACAGCAGCAACAGCAACAGCAACAGCAAGAACAACAACGACAGC
AGCAGCAGTGGCAGCATCAGGGGGGTAGAGACGGAGGCCCGTTTTACTCC
TCACGGCGGTACGAACCTTCTCGTCAGAGCAACAATCGCAACGGCAAAAG
CAACGGTAACAGCAACGGTAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCATTAGCACCCGAAATTATCGCTGTCCGGACCATCACGACCAGATGCGA
AGGGCACCAAGTCGAAGTCGGGAACGCAGCGAGGAGCGACTGCCTCGTCG
TGAGGATTTCGATCACCATTATCATTACAACCCTCCTCAATCTCACCCTC
ACCAGCAGCAGCCGAATAAACTGCCGCAGGTGCAGCCCCAGTGGCGAGAG
GAGGAGGAGGACCGCAAGCCATTCATTCGATCGGTTGTACCTCAGTCGAA
GGCGCCGGCGGGACGAGAAGTAAGAGGAGGAGGAGGAGCAGGAGGGGAGG
GAGTGGGAGGAGGGGGAGGAGGGGTGTCCGGATTTATTTAGACGAGACGG
CGGAGGGAGAAAAGGAGTGAGAAAAGAATGGCGGAGAGTAGCAAAGGCAA
AGAGACAGCGTGTATATGTGTTGCAGTTTGTGTTAGAGTGTATGCGTATA
AATGTGTAGTTTTGTTGTGGGCGCAGGTCGTGGCTGCAAACAATGAGGCG
CAGACAAAGAAATACTGATGTACAAAATTTT
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protein sequence of NO13G02840.1

>NO13G02840.1-protein ID=NO13G02840.1-protein|Name=NO13G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=866bp
MDAASASVAAADVPAAIPAADGLPPLIRPHLVKKKTKMGRKITSLAQTHK
RHPLRKAVCRIYSWMDVFIDYLESVVNKNTVVSYFVSLALLLGFDDDTAQ
RKSKYKEIRVAEQRMSLKDTAPCTLDIRAEVKRFHDAVGEMREEIEKERR
NAITNGRTNFVGKRFSSPCKHLGAFLTAVEGRLDEEQYARGGMGGGAGEG
GGGKGGGDGGGIGSLIGMGLGRTPGQKWKQAGNSISSDNGSGGSGGCGGA
GGGGGEGVGGEGDVSSFGPRQGKEDNSSSNKKQRTVSTLSNNSNTSGRKD
DTDDEVQVIESEVNQKQHQYQHQHEQYQQYQQYQQQQHQYQQHRQQGGKV
VNDGVERRGKGDDEEEEDEEEEEEGLGEKEKANETKQQNKKVKKTSALKR
ENKELKALVTSLQKSLDKKRKKVARLEESMAEALEEAKKKVARLEKDAAD
AKEEAKQAMEKLEERLRDEVDYHRRQGQKKQQQQQQHGRGKELRLSLPPL
PPPIVGPPPPPPPPPPPPPLSSSSSSSPPPSSSSSSPPPPPPPPPPSLPP
PPASSSSPPAPSTSPPSSPSSSSSAPHAPRPSKSSLRMPSVPAATTVSCT
SAFAVAVTAATTAGKIPAPPPPSCSSSSASASSLPTASSSLRSLPPSSRP
SLHLQEPQQQQQQQQELPGKKKFPPKKPQEIQEKKQRRQQQQQQQQQEQQ
RQQQQWQHQGGRDGGPFYSSRRYEPSRQSNNRNGKSNGNSNGNSSSSSSS
SSIISTRNYRCPDHHDQMRRAPSRSRERSEERLPRREDFDHHYHYNPPQS
HPHQQQPNKLPQVQPQWREEEEDRKPFIRSVVPQSKAPAGREVRGGGGAG
GEGVGGGGGGVSGFI*
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Synonyms
Publications