NO13G02790, NO13G02790 (gene) Nannochloropsis oceanica

Overview
NameNO13G02790
Unique NameNO13G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3345
Alignment locationchr13:773086..776430 +

Link to JBrowse

Properties
Property NameValue
DescriptionSsm4 like ring finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:773086..776430 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
IPR011016Znf_RING-CH
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO13G02790 vs. NCBI_GenBank
Match: EWM21943.1 (ssm4 like ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 224.6 bits (571), Expect = 8.800e-55
Identity = 248/602 (41.20%), Postives = 289/602 (48.01%), Query Frame = 0 
Query:   34 ICRICLEPTKPETFISPCRCSGTQSYIHLRCLRRWQRSAINSDNPSRAFYCGVCATSYANAYSLAAP----TPALAGAASQTQSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYLEPPLALSSIVHK----ASVAMESAVSPSWLLKALVLLALSCLVPCFVLVYWAALAVSCLPSPFPLPTHDDLDQHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFLLASREIGSDSLFHRSLVLLLDHGPWGSRGVIINKPLRRTREGRLLLQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPWSSILCGGPVEPQSLLILHNGPRPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVGMGLFVYECSSQTLDLLQRWCGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGWVSGQLAEEVKRGEWCVLELDDEITAEVVFNVSLDEXXXXXXXXXXXXXXELWEVIMGVVVEGREE 628
            ICR+C E T+PET ISPCRCSGTQSYIHLRCLRRWQRSA+ S NP RAF CGVCA SY + YSL  P         GAAS  Q                                                          +E  + LS +VHK    ASVA+ESA SPSWLLK L+LLALSCLVPCFVLVYWA LA S LPSPF LP    L+                        XXXXXXXXXXXXXXX FLLAS +IGS SLFHRSL+LLL+HGP GSRG+++NK LR T  G  L +R             XXXXXXXXXXXXX                                                 PW  +LCGGPV+P  LL+LH+  RPP                    XXXXXXXXXXX      ++V E S + L+ L+R                                                  XXXXXXXXXXXXXXXXXXXXXX   ++GW  GQL EEVKRGEW VL +D E+T+E+V  ++L+E              ++WE +M  +V  +E+
Sbjct:   44 ICRVCFESTRPETLISPCRCSGTQSYIHLRCLRRWQRSAMASTNPLRAFTCGVCAASYTDLYSLVHPPVTRRAVPGGAASMPQGQG---------------------------------PADAAARGRAGAQEAPWGALPVVEARMGLSEVVHKAVLGASVALESAASPSWLLKLLILLALSCLVPCFVLVYWAVLAFSYLPSPFLLPPDHPLEH--------------------PPHXXXXXXXXXXXXXXXXFLLASEKIGSGSLFHRSLILLLEHGPQGSRGLVVNKRLRDTAVGGRLGRRLSLSELARPGGRGXXXXXXXXXXXXXMAALAGRLP----------------------------------------PW-DLLCGGPVQPHVLLVLHD--RPPG----------------GEGXXXXXXXXXXXXXXXXXVYVVEESGRALEALER---------------------------------ASVPSGVAPASLASPRAXXXXXXXXXXXXXXXXXXXXXXFFGYAGWGPGQLLEEVKRGEWFVLGMDAEMTSELVLGLALEE---DGEEGEGGGGVQVWEDLMTALVRRQED 497
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BLAST of NO13G02790 vs. NCBI_GenBank
Match: ADE77100.1 (unknown [Picea sitchensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-7
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:   34 ICRICLEPT-----------KPETFISPCRCSGTQSYIHLRCLRRWQRSAINSDNP----SRAFYCGVCATSYANAYSLAAPTPALA 106
            ICRICLEP              E  ISPC CSGTQ+++H++CLRRWQ++ ++S  P    + A  C VC       +SL  P   LA
Sbjct:   10 ICRICLEPAPISLSDDADLLAEERLISPCACSGTQAFVHVKCLRRWQKAVMSSTRPGASHTAALICPVC----TQKFSLVPPQTGLA 92
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BLAST of NO13G02790 vs. NCBI_GenBank
Match: OLP96016.1 (E3 ubiquitin-protein ligase MARCH1 [Symbiodinium microadriaticum])

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-7
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0 
Query:   34 ICRICLEPTKPETFISPCRCSGTQSYIHLRCLRRWQRSAINS--------DNPSRAFYCGVCATSY 92
            +CR C E  + +  ISPCRCSG Q Y+HL+CLR WQR+ + S        D+ +R   C VC T +
Sbjct:  184 LCRFCFEGDEEDELISPCRCSGGQKYVHLKCLRMWQRAVLVSQPTHPDLYDHDTRQRICNVCKTEF 249
The following BLAST results are available for this feature:
BLAST of NO13G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21943.18.800e-5541.20ssm4 like ring finger protein [Nannochloropsis gad... [more]
ADE77100.11.800e-741.38unknown [Picea sitchensis][more]
OLP96016.12.400e-743.94E3 ubiquitin-protein ligase MARCH1 [Symbiodinium m... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001615NSK001615Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02790.1NO13G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100157g13gene8492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02790.1NO13G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02790 ID=NO13G02790|Name=NO13G02790|organism=Nannochloropsis oceanica|type=gene|length=3345bp
GCTGGCGTGCAACGCTCTCTCTGTGGTGTTTTATGTTGTGGGTGGTGGAT
GACGAGATGACGATGGAGTTCCGAGACGAGAAGTGGTGAGGGCTTGCGAG
AACCGCAAGCTCCACACTCGAGGACGTGCTTCTACGTTTCTGCCTCTACC
AATTCGTGGACTCGCTGTGAATAAGTTTGGAATGAAATGCTTGGCTGAGT
GTGTAAGACTGAGCAGCCTCAAGCGGATTGGCCTGGCGGATGGAGAAGGA
AAGAACGATGGTGGGGAGAGAAAAGGAAGTTTTGTGGCCCTGGCGAGTCG
TCTTGGGGGGTGGGGACATGCATCTGTTACCTTACGTGCAGCAACGCTCA
CAGAGTGCAACGCCTCCTGCGCCACCATGTTAAGGCGGAGGGGGGTGTGC
ACCGCAAATCGTACGTGTATGTGGTGGTTGGCTTCACAGGACAAGAAGGG
AAAACGAGGTCAATAGCCCGGTTTCAAGCGAGGGGGGCACGGACAAGGCT
ACAAGCAGGATGAGACTTGGGACCTGCACTGCGATGGACAAAGGGCGCAT
GTTCTCTCACAGTAGCCATGTCATCGCCTAAAACCGAACCCCCTTCTTTT
GGCATTGTGATGCCAGGTTGGATAATGTCCAAAGAGAAAATAAGGAGGGT
GGACCGTGGGTTGTATGGAGATAGCCAATGTCACAATGCAGGGAAGCAAT
AAAATTCTTGAAACAAGTTTGCTGCGAAGGCTATGACACCTCATTTCAAC
TTCTTCCTGCTACCCTCCCACTTCCCCCCCACACGCACAGGACTAGATCA
CGCTGGAGCGATAGCTTCTCTCTACGTGTCCTGAGTACGGTCTTCTTCTT
CCGCTGTGGCCTTGGGCCTAATTTTCCAGTTCTTTGTCGCTCATCTCCTC
GCTCGGCACGTCGTCGTTACTTTCTTCTCCTACCTCAGCACCAACTACGA
CATCACCTGCTCCCTCCTTCTCCTCCTCCTACAATAGAACAATGCTGACC
TCTGTTTTCGCGCGTGCGTCTGCACCTCTTCCGTCCATCCCTCCAAATTC
TCCTCAGTCGACAAGCAGCAGCAGCAGTCCAAAGAAGAAAATTTGCCGCA
TCTGCTTGGAACCTACAAAGCCCGAGACGTTCATCTCGCCTTGCAGgttg
caagaccgaaaggagaagagagagggatgggaaggcaaagcaaaagcatg
agctctgtattattaagcaagacattcacctaacctatctccctctctct
ttctccctccctccctccctccctcccctcttcctcgtagGTGCTCGGGC
ACCCAATCATATATCCACTTGCGTTGCTTGCGTCGATGGCAACGCAGCGC
CATAAACAGTGACAACCCCTCTCGAGCTTTCTATTGCGGTGTCTGTGCGA
CAAGCTACGCAAATGCGTACTCCCTTGCAGCACCAACACCAGCACTAGCA
GGAGCAGCATCCCAGACACAATCATATGCTACAGCTCCTACCGCATCAGG
ATCAGCAGCTGGCGGCAGTAGCGCTGCTGGTACTGGTGTTTCTCGCACTG
GCACGCGTCTTCATTCTCGTCACATCCTTCCCCAACACCCGCAGCAGCAG
CAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTACTTACCTCGA
ACCACCCCTCGCTCTCAGCTCAATCGTACACAAAGCCTCGGTCGCTATGg
tgaggccagcccttcctccctccctccctccctccccctctctctcccct
ccctctccctccctccttccttcacccacccctcattcctcccctccctc
ctcccctccctccctacagGAATCTGCCGTCTCTCCTTCATGGTTGCTCA
AGGCCCTGGTTCTCCTCGCCCTCTCCTGCCTGGTCCCATGTTTCGTCCTC
GTGTATTGGGCAGCGCTGGCCGTGTCCTGCCTCCCCTCCCCCTTCCCCCT
CCCCACACACGACGACCTCGACCAGCACCTGCAGCAGCAGCAACAACGAC
GACACCACCGCCCCTATGACTCCTTTAGCAGCAGAAATACTAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGTCTTAGCCGCTGGAAAGTTTCTCCT
CGCTTCGCGTGAGATAGGCTCCGACTCCCTCTTTCATCGCTCCCTCGTCC
TGCTTCTCGATCATGgtgagcgcatccctccctccctccctccctccctt
cctccctccctcccttttgacatcccctcgccccatttttgcactcctct
gctctctcatctttccccctccctcccaccttgtgtcagatcacgggcga
tacacatctcctcaccgcatcccccctccctccctcccttcttccctccc
tcctcacctccttctatacagGGCCTTGGGGAAGTAGGGGCGTCATCATC
AACAAGCCTCTGAGGAGGACGAGGGAGGGAAGGTTATTGCTGCAGCGGAT
ACAGTCAGCTGCTGCTGCTGCTGTCGGTGGTGGTGGTACCGCAACAGGTA
GTATCAGTAGGGACGTACACCGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACCAGAGAGAACGCAATTTGAGGAGGA
TGAGGGGAAAGAGGAGGAGGAAGGAGGGGGAGAGGAACGGCAGGAGGAAG
CTGTCGCGGCGTCAGCTGGCGTCCCCTGGTCATCGATCTTGTGTGGAGGC
CCCGTCGAGCCGCAATCCCTCCTCATCCTCCACAATGGTCCTCGCCCTCC
TTCCCCCCCGCTCTCCTCCTCCTCCTCTTTCTCCTCCTCTCTCGCCTCCT
CCGCGCTCGGTGCAGAGGAGGGGGGAAGGGAGGGAGGGAGGGAGGTAGAG
GTGGGCATGGGGCTGTTTGTGTACGAGTGTTCCTCGCAAACGTTGGATTT
GCTGCAGCGGTGGTGTGGCTCCTCCTCGTCCTCGTCCTCGTCCTCGCTCC
CTTCCTCGTCCTCGTCCTCGTCCTCGCTCGTCCGGCCATCGTCCCCCTCC
TCCTACTCCTTCCAGCCGCCCTCTGTCTATGACGACGAGGACGAGGACGA
GGACGAGGACGACACTGGAGAGGAGGGAAGGGAGGGAGGGAGGGCGAGGA
GGAGGAGGAAGAGGAGGGCGAAAGCTTTTTTTGGATTTTCCGGATGGGTG
TCAGGGCAGCTTGCGGAGGAGGTGAAGAGAGGGGAGTGGTGTGTGTTGGA
ATTAGATGATGAGATTACTGCGGAGGTGGTTTTCAATGTCTCCTTGGATG
AGGGGGAGGGGGAGGGGGAGGAGGGGGGAGGAGGGGAGGGGGAGGAATTG
TGGGAAGTGATAATGGGAGTGGTGGTGGAGGGGAGGGAGGAGTAG
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protein sequence of NO13G02790.1

>NO13G02790.1-protein ID=NO13G02790.1-protein|Name=NO13G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MLTSVFARASAPLPSIPPNSPQSTSSSSSPKKKICRICLEPTKPETFISP
CRCSGTQSYIHLRCLRRWQRSAINSDNPSRAFYCGVCATSYANAYSLAAP
TPALAGAASQTQSYATAPTASGSAAGGSSAAGTGVSRTGTRLHSRHILPQ
HPQQQQEQQQQQQQQQQLTYLEPPLALSSIVHKASVAMESAVSPSWLLKA
LVLLALSCLVPCFVLVYWAALAVSCLPSPFPLPTHDDLDQHLQQQQQRRH
HRPYDSFSSRNTSSSSSSSSSSSVLAAGKFLLASREIGSDSLFHRSLVLL
LDHGPWGSRGVIINKPLRRTREGRLLLQRIQSAAAAAVGGGGTATGSISR
DVHRQQQQQQQQQQQQQQQQQPERTQFEEDEGKEEEEGGGEERQEEAVAA
SAGVPWSSILCGGPVEPQSLLILHNGPRPPSPPLSSSSSFSSSLASSALG
AEEGGREGGREVEVGMGLFVYECSSQTLDLLQRWCGSSSSSSSSSLPSSS
SSSSSLVRPSSPSSYSFQPPSVYDDEDEDEDEDDTGEEGREGGRARRRRK
RRAKAFFGFSGWVSGQLAEEVKRGEWCVLELDDEITAEVVFNVSLDEGEG
EGEEGGGGEGEELWEVIMGVVVEGREE*
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Synonyms
Publications