NO13G02740, NO13G02740 (gene) Nannochloropsis oceanica

Overview
NameNO13G02740
Unique NameNO13G02740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr13:752112..753146 +

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Properties
Property NameValue
DescriptionNifu like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:752112..753146 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0051536iron-sulfur cluster binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016043cellular component organization
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR001075NIF_FeS_clus_asmbl_NifU_C
Homology
BLAST of NO13G02740 vs. NCBI_GenBank
Match: EWM21931.1 (nifu like protein [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 2.300e-85
Identity = 178/225 (79.11%), Postives = 187/225 (83.11%), Query Frame = 0
Query:    9 AASTFVLVCLVLVLSLAEAFLPAIPK----------TPATTRRFSSPETITSPFESGVSSGPNDDF-LPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDWTDQ 223
            AAS F L C+ L   LA AFLPA  K          T       +S +TITSPFESGV  G  DD  LPLT ENVE+VLDEMRPYLMSDGGNVV+S+IDGPVVKLELQGACGSCPSSTMTMKMGLERRL+EKIPEISEVIQAMPEGPAL+TENID VLEGVRPFLMVAGGSISVKEISGLGGLQP VLLHMEGNNQSLFSVRMEITQRILRNFMV GLRV+WTDQ
Sbjct:   23 AASAF-LTCVALFPLLAHAFLPATFKPFRAYSDASSTLVVPLSRTSTDTITSPFESGVKQGGGDDGPLPLTLENVEMVLDEMRPYLMSDGGNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALSTENIDQVLEGVRPFLMVAGGSISVKEISGLGGLQPLVLLHMEGNNQSLFSVRMEITQRILRNFMVPGLRVEWTDQ 246          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: XP_002181084.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47736.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 239.6 bits (610), Expect = 9.600e-60
Identity = 128/215 (59.53%), Postives = 154/215 (71.63%), Query Frame = 0
Query:   22 LSLAEAFLPAIPKTPATTRRFSSPETITSPFESGVSS-----------------GPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            LS+A +F+P   + P T       + I SPF+S                     GP    L LT++NVE VLDEMRPYL+ DGGNV+IS+IDGPVVKLELQGACG+CPSST TMKMGLER LREKIPEI EVIQAMPEGP LT+E +D VL+GVRPFL VAGGSI++  I G+ GLQP + L MEG++ SL SV++EI QR+LR+FMVAGL+V W
Sbjct:   13 LSMASSFVPTAYRHPKTVGTTLLRDQIVSPFDSSERDEGSVATTELDAPPTKLVGP----LDLTWDNVEAVLDEMRPYLIQDGGNVIISDIDGPVVKLELQGACGTCPSSTQTMKMGLERGLREKIPEIQEVIQAMPEGPELTSEQVDVVLDGVRPFLQVAGGSINMDRIDGVDGLQPTIWLKMEGSSASLNSVKLEIAQRLLRHFMVAGLQVQW 223          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: GAX18347.1 (hypothetical protein FisN_23Hh241 [Fistulifera solaris])

HSP 1 Score: 225.7 bits (574), Expect = 1.400e-55
Identity = 123/212 (58.02%), Postives = 151/212 (71.23%), Query Frame = 0
Query:   16 VCLVLVLSLAEAFLPAIPKTPATTRR--FSSPETITSPFE------SGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            V ++L L  A AF+     T    RR  F     I SPF+      +   +  +D  L LT+ENVELVLD MR YL+ DGGNVVISEIDGPVV+LELQGACG+CPSST TMKMGLER L+E+IPEI EV+Q MPEGP LT E I+ VL+GVRPFL VAGGSI +  I G  GLQP + L+M G++ SL SV++EI QR+ R+FM+AGLR++W
Sbjct:   10 VAILLCLEPAAAFV----TTNGVARRPTFVRMADIISPFDDSDNKSASTKTATDDGPLDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEW 217          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: GAX16630.1 (hypothetical protein FisN_23Lh241 [Fistulifera solaris])

HSP 1 Score: 222.6 bits (566), Expect = 1.200e-54
Identity = 123/220 (55.91%), Postives = 152/220 (69.09%), Query Frame = 0
Query:   16 VCLVLVLSLAEAFLP--AIPKTPATTRRFSSPETITSPFE--------------SGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            V ++L L  A  FL    +P+   T  R +    I SPF+              + +  GP    L LT+ENVELVLD MR YL+ DGGNVVISEIDGPVV+LELQGACG+CPSST TMKMGLER L+E+IPEI EV+Q MPEGP LT E I+ VL+GVRPFL VAGGSI +  I G  GLQP + L+M G++ SL SV++EI QR+ R+FM+AGLR++W
Sbjct:   10 VAILLCLEPAAGFLTTNGLPRLAPTFVRMAD---IISPFDDSDNKSSTSSTKTATDIDKGP----LDLTWENVELVLDSMRSYLIQDGGNVVISEIDGPVVRLELQGACGTCPSSTQTMKMGLERGLKERIPEIQEVVQKMPEGPELTDEQINVVLDGVRPFLQVAGGSIDIDRIEGKDGLQPAIFLNMRGSSASLNSVKLEIAQRLQRHFMMAGLRIEW 222          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: CBJ30713.1 (NifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V) [Ectocarpus siliculosus])

HSP 1 Score: 221.9 bits (564), Expect = 2.100e-54
Identity = 115/189 (60.85%), Postives = 145/189 (76.72%), Query Frame = 0
Query:   37 ATTRRFSSPETITSPFESGVSSGPNDD------FLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            A  RR SS + I SPF +   +   D+       L LT ENVE VLDEMRPYLMSDGGNV + EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP LT EN++ VL+GVRPFL VAGGSI+++ ++G+  +QP + L M G++ SL S+RMEI QRI R FM++ LRV++
Sbjct:   87 AEPRRMSSTD-IESPFATPGMADMGDEEEDPEALLTLTLENVETVLDEMRPYLMSDGGNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPELTVENVEKVLDGVRPFLSVAGGSINIQSLTGVSSIQPVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEF 274          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: XP_002286272.1 (nifU like protein [Thalassiosira pseudonana CCMP1335] >EED95913.1 nifU like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 219.9 bits (559), Expect = 7.900e-54
Identity = 113/188 (60.11%), Postives = 142/188 (75.53%), Query Frame = 0
Query:   47 TITSPF-------ESG--------VSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            TI SPF       ESG         S G +D+ L LT+ENV++VL+EMRP+L+ DGGNV ISEIDGP+VKLELQGACG+CPSST TMKMGLER+LRE+IPEI EVIQA+P+ P L  + I+ VL+ VRPFL VAGG+I V  I+G GGLQP + L M G+  SL SV++EI QR+ R+FM++G+RV+W
Sbjct:   49 TIVSPFDNTEDSDESGEGVATATYTSLGSDDEPLDLTWENVDMVLEEMRPFLLQDGGNVAISEIDGPIVKLELQGACGTCPSSTQTMKMGLERKLRERIPEIQEVIQALPDTPDLNEDQINIVLDSVRPFLQVAGGTIDVASITGEGGLQPTITLKMGGSAASLNSVKLEIAQRLQRHFMISGMRVEW 236          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: EJK65619.1 (hypothetical protein THAOC_13500 [Thalassiosira oceanica])

HSP 1 Score: 219.5 bits (558), Expect = 1.000e-53
Identity = 116/223 (52.02%), Postives = 151/223 (67.71%), Query Frame = 0
Query:   11 STFVLVCLVLVLSLAEAFLPAI-PKTPATTRRFSSPETITSPFESGVSSG-------------PNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDW 220
            ST   +C+    S+    L  I P+ P T R  +    I SPF+                     D+ L LT++NV++VLDEMRPYL+ DGGNV ISEIDGPVV+LELQG CG+CPSST TMKMGLER+L E+IPEI EV+QA+P+ P LT + I+ VL+ VRPFL VAGG+I +  ISG GGLQP + L M+G+  SL SV++EI QR+ R+FM++G+RV+W
Sbjct:    4 STCSFICIATACSVTSFNLARIAPQRPQTRRFGTLLRAIVSPFDDSDDEAGEVATATYTPLPTEGDEPLDLTWDNVDMVLDEMRPYLLQDGGNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDLTEDQINVVLDSVRPFLSVAGGTIDIDSISGEGGLQPTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEW 226          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: XP_005835406.1 (lysyl-tRNA synthetase [Guillardia theta CCMP2712] >EKX48426.1 lysyl-tRNA synthetase [Guillardia theta CCMP2712])

HSP 1 Score: 211.1 bits (536), Expect = 3.700e-51
Identity = 112/203 (55.17%), Postives = 148/203 (72.91%), Query Frame = 0
Query:   20 LVLSLAEAFLPAIPKTPATTRRFSSPETITSPFESGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPE-GPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNFMVAGLRVDWTD 222
            LVL  A+  L A+  T +    F        P E+  S    D  LPLT+ENVE VLD MRPYLMSDGGNV I++IDG +V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V+Q + + GP L+ ++++ VL+ VRPFL VAGGSI + ++ G+GG+QP ++L M G + +L SV+ EI QR+ RNFM+AGLR++WTD
Sbjct:  437 LVLRSAKRSLLALKDTDSIVSPFDPSVDPLLPKETEESPTDLDGPLPLTWENVEKVLDTMRPYLMSDGGNVKIADIDGGIVRLKLEGACGTCPSSTMTMKMGLERGLREKIPEIVDVVQDLGDGGPELSPDSVEKVLDTVRPFLKVAGGSIELFDLRGVGGMQPVIILKMTGTSAALRSVKNEIVQRLQRNFMLAGLRIEWTD 639          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: XP_005764537.1 (hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516] >EOD12108.1 hypothetical protein EMIHUDRAFT_452262 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 193.7 bits (491), Expect = 6.000e-46
Identity = 108/210 (51.43%), Postives = 138/210 (65.71%), Query Frame = 0
Query:    6 SCGAASTFVLVCLVLVLSLAEAFLPAIPKTPATTRRFSSP---ETITSPFESGVSSGPN--DDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNF 211
            SCG  +  +L+    + S     +PA+   P    R  +P   + +TSPFE+  S+G       LPLT ENV+ VLDEMRPYLM+DGGNV ++EIDG VV+LELQGACGSC SS MTMKMGLER LREKIPEI  V Q  P+GP LT + I+GVLE +RPFL +AGG + + E+    G+ P   L + G+  ++ SVR EI QR+ RNF
Sbjct:    3 SCGGRARCLLLLSSWLHSAGSLRVPAVSAVPRVQHRAGAPRCSDPVTSPFEASASNGGETLTGPLPLTAENVDAVLDEMRPYLMADGGNVAVAEIDGGVVRLELQGACGSCASSAMTMKMGLERGLREKIPEIIAVEQVAPDGPQLTEDGIEGVLEEIRPFLKMAGGDVELVELIET-GVAPSCTLRISGSGSTINSVRAEIAQRLKRNF 211          
BLAST of NO13G02740 vs. NCBI_GenBank
Match: OSX80688.1 (hypothetical protein BU14_0033s0032 [Porphyra umbilicalis])

HSP 1 Score: 176.0 bits (445), Expect = 1.300e-40
Identity = 94/167 (56.29%), Postives = 115/167 (68.86%), Query Frame = 0
Query:   44 SPETITSPFESGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTENIDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRMEITQRILRNF 211
            +P +     E   SS      LPLT  NVE VLDE+RPYLM+DGGNV ++EIDG  V+L L+GACGSCPSS MTMKMG+ERRL E IPEI EV Q  P GP LT E ++GVL  VRPFL VAGG I + +++    L P V L M+G   ++ SV++EITQR+ RNF
Sbjct:    4 APPSTAGGAELVSSSTSPSSVLPLTLANVETVLDELRPYLMADGGNVSVAEIDGATVRLALEGACGSCPSSMMTMKMGIERRLLEAIPEIEEVCQVEPAGPPLTPEGVEGVLNEVRPFLNVAGGGIELVKMTPDSAL-PVVRLKMQGTGAAINSVKIEITQRLKRNF 169          
The following BLAST results are available for this feature:
BLAST of NO13G02740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21931.12.300e-8579.11nifu like protein [Nannochloropsis gaditana][more]
XP_002181084.19.600e-6059.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX18347.11.400e-5558.02hypothetical protein FisN_23Hh241 [Fistulifera sol... [more]
GAX16630.11.200e-5455.91hypothetical protein FisN_23Lh241 [Fistulifera sol... [more]
CBJ30713.12.100e-5460.85NifU-like protein 2, chloroplast precursor (AtCNfu... [more]
XP_002286272.17.900e-5460.11nifU like protein [Thalassiosira pseudonana CCMP13... [more]
EJK65619.11.000e-5352.02hypothetical protein THAOC_13500 [Thalassiosira oc... [more]
XP_005835406.13.700e-5155.17lysyl-tRNA synthetase [Guillardia theta CCMP2712] ... [more]
XP_005764537.16.000e-4651.43hypothetical protein EMIHUDRAFT_452262 [Emiliania ... [more]
OSX80688.11.300e-4056.29hypothetical protein BU14_0033s0032 [Porphyra umbi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02740.1NO13G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560105gene_9036Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100220g8gene8500Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02740.1NO13G02740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02740 ID=NO13G02740|Name=NO13G02740|organism=Nannochloropsis oceanica|type=gene|length=1035bp
ATGGCGCGGGATCTTTCCTGCGGTGCAGCATCGACGTTCGTACTAGTATG
CCTTGTCCTCGTCCTTTCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCA
AGACCCCTGCGACAACACGCCGATTCTCCTCACCCGAAACAATTACATCA
CCGTTTGAGTCTGGCGTCTCGgtaagtgtgcttctatggtgcccgtgaaa
gtgtagggagtgatgacattgctttttccatgggctatgtcaaggcctca
gatcctacccgcttcacactttccatattttttgatagTCCGGCCCGAAC
GATGACTTTTTGCCTCTGACATTCGAGAATGTTGAGTTGGTGCTGGACGA
GATGCGGCCTTACCTCATGTCGGATGGgtaagagagaagttatataatgg
atctttgagggggtgtcggacagcagtggagtcgatagattgctgatact
catactgtcctccttatctattttcgacagTGGCAACGTGGTAATTTCGG
AGATTGACGGTCCGGTTGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGC
TGTCCTTCTTCCACCATGACCATGAAAATGGGCCTGGAACGCCGCCTTCG
CGAGAAGATCCCCGAAATTAGCGAGgtgggtaattttgcgggttgggata
aaggcatggaatgaacacttggaagatggaagaatccaggaatatttacc
ttgcaaccacgctcactactcgatcgtcctctactttttttcgatgtaca
cacgaacagGTCATCCAAGCCATGCCCGAAGGACCTGCACTCACCACAGA
AAACATAGATGGTGTCCTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAG
GGGGCTCAATCTCAGTGAAGGAGATCTCGGGTCTGGGCGGGCTACAACCT
CGGGTCCTCTTGCACATGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCG
GATGGAGATCACGCAAAGAATACTGCGGAATTTCATGGTGGCTGGTTTGC
GTGTGGATTGGACGGACCAAGAGGGTGTGCTCTAG
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protein sequence of NO13G02740.1

>NO13G02740.1-protein ID=NO13G02740.1-protein|Name=NO13G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MARDLSCGAASTFVLVCLVLVLSLAEAFLPAIPKTPATTRRFSSPETITS
PFESGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVV
KLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTEN
IDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRM
EITQRILRNFMVAGLRVDWTDQEGVL*
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Synonyms
Publications