NO13G02730, NO13G02730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02730 vs. NCBI_GenBank
Match: EWM21939.1 (brca1 brca2-containing complex subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 433.0 bits (1112), Expect = 1.400e-117 Identity = 273/548 (49.82%), Postives = 336/548 (61.31%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREG--GRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTVRKGIPIALVP-SAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAXXXXXXXXXXXXXXXXXXXXXRAGDVHALYNAAVYGKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSVAAGSMEGVMSVKEGGRKGRRGNGMMDVDECQPSAS----------------------PYSSSVLAVSRPEILKKAAEGWQMRRMDGNEDY--DVIVRLTREYALLPFGG------EGFGQWWLSVGEEKGRLTRIEGNRNGNHTVTFGFVVARPGERDSRGEKEKETIVQVLGSQDSVTFWCRRVRPIVSSDANL 516 MSL RV +THEAL CC+ QALSTE+QEVMSVLLGTW P TGE++EAEV HV+VM+RTDRRKDRVEVGYEQLAEAE++ASAL A+G++ RI+GWFHSHPHITVLPSHVD++TQAQYQAMDAGF GLICAVFQDDLKQQ GRV +TAFQSVP G + G ++++E ++ G +G V K IPI+L+P S G+ + DAMRC+VSLQEVLM+EERYFYE A +ANLRNN+ R G VHAL+NAA+Y +ALSSLLEESA+PL +TLESVLLN+RRE RV+R+ E +E S + E EG +G G MMDV+ AS LA SRP+IL++AAEG M+ + E +V V L REY P GG GFG+W L VG+ +GRLTR+ +G + ++FG AR G E + E IVQ+LGS D V+FWCRRV+PIV A + Sbjct: 1 MSLERVRITHEALNCCIAQALSTERQEVMSVLLGTWMADPATGEHVEAEVVHVIVMARTDRRKDRVEVGYEQLAEAEELASALKNASGQDIRIIGWFHSHPHITVLPSHVDIRTQAQYQAMDAGFFGLICAVFQDDLKQQSGRVALTAFQSVPAFAAARGXXXXXXXXSMARGLAQVENE---PFLPFDAAAGEAG--SGFVCKRIPISLLPGSPLSPLWAWRGETSTSYSDRACDAMRCLVSLQEVLMREERYFYECAVRANLRNNS--QGGAGRGARDVSIRESSQGRIGAVHALHNAAIYSRALSSLLEESALPLANTLESVLLNLRREVRRVRRSTEGLEGDLPSERAPPTERDE------EGEARGGNGGEMMDVEGPYQQASLXXXXXXXXXXXXXXXXXXXXXXXXXXXLASSRPKILRRAAEGSFMQSLLQEEGLRGEVRVSLVREY---PSGGGIDGNISGFGEWALEVGKLRGRLTRL--YESGGNMMSFGLAGARKG-----CEVQNERIVQLLGSDDLVSFWCRRVKPIVCPTATI 525
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_022855747.1 (lys-63-specific deubiquitinase BRCC36-like [Olea europaea var. sylvestris]) HSP 1 Score: 152.9 bits (385), Expect = 2.700e-33 Identity = 90/207 (43.48%), Postives = 128/207 (61.84%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHS------IGLESTGVETGTVR 202 M+L V +T E C+T ALSTE +E+M +LLG H G+ + A + + R+DRRKDRVE EQL A A ++ ATG T+++GW+HSHPHITVLPSHVD++TQA YQ MD+GF+GLI + F +D Q+ GR+++ AFQS+ G R E A + L + I+ E S+S+ ++ +G EST + G +R Sbjct: 1 MALTSVKMTGEVWLACMTHALSTETEEIMGLLLGD-IQHSRNGD-VTALIWGALPQPRSDRRKDRVETNPEQLVAASAYAERMTIATGVTTQVIGWYHSHPHITVLPSHVDVRTQAMYQLMDSGFIGLIFSCFNED-AQKAGRIQVLAFQSLDGKRNHELRLASVSPLPKSPV-IEIESSSSFSKNALTRPGFVGRESTQKDNGDLR 203
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_016578501.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Capsicum annuum]) HSP 1 Score: 152.5 bits (384), Expect = 3.500e-33 Identity = 94/216 (43.52%), Postives = 127/216 (58.80%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIG---LESTGVETGTVRKGIPIALVPSAG 214 MSL V +T E C++ ALSTE +E+M +LLG T + ++ A + + R DRRKDRVE EQL A A ++ ATGR TR++GW+HSHPHITVLPSHVD++TQA YQ +DAGF+GLI + F +D Q+ GR+++ AFQS+ G + R + + + ID E S S SIG + S +TG R ALV G Sbjct: 1 MSLTSVKMTEEVWLTCLSHALSTETEEIMGLLLG--DTQQSKNGSVTALIWAALPQPRCDRRKDRVETNPEQLTAASVKAERMTMATGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDAGFIGLIFSCFSED-AQKVGRIQVIAFQSLDGKQQNHILRPISLSPVHKTSVIDLESSLSSADTSIGGSKISSLEQDTGDSRAA---ALVSKGG 210
BLAST of NO13G02730 vs. NCBI_GenBank
Match: GAX83860.1 (hypothetical protein CEUSTIGMA_g11285.t1 [Chlamydomonas eustigma]) HSP 1 Score: 152.1 bits (383), Expect = 4.600e-33 Identity = 103/318 (32.39%), Postives = 151/318 (47.48%), Query Frame = 0 Query: 5 RVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTVRKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAXXXXXXXXXXXXXXXXXXXXXRAGDVHALYNAAVYGKALSSLLEESAIPLIHTLESV 323 RV +T E + C+T A STE +E+M +LLG + GE + + RTDRRKDRVE EQ+A + A LS TG TRI+GW+HSHPHITVLPSHVD++TQA YQ +D F+GLI +VF D + GRV++TAFQSV + L D +H S L+ ++ VR+ +P+++V S G ++ ++ +Q L EE+ Y+ A N + + L++AA Y ++L LL + P + L ++ Sbjct: 4 RVDVTEEVILTCMTHAFSTEGEEIMGLLLGDIEV-ASNGETV-TRIWMAYPQIRTDRRKDRVETSPEQIARSSAHAERLSIETGVRTRIIGWYHSHPHITVLPSHVDVRTQAMYQMLDEHFVGLIFSVFNGDATTRSGRVQVTAFQSVSPDSASAAPQLLSPISSTALPETMDSPLAKALHAST-LDIKDLQGSLVRREVPLSVVKSRSG----------------PEKGLQDLIVVQRTLCLEEKGMYQKAVDTTRPNPGTDYASSTGRFTTESCW------SSSLSRLHHAAAYQQSLCYLLSNNIAPTLQNLTTL 296
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_001702014.1 (predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 149.4 bits (376), Expect = 3.000e-32 Identity = 106/352 (30.11%), Postives = 166/352 (47.16%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDNGFIRIDDEDSTSYVHHSIGLESTGVETGTVRKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAXXXXXXXXXXXXXXXXXXXXXRAGDVHALYNAAVYGKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSVAA 353 MSL RV +T+E L + A STE +EVM +LLG T P G + RTDRRKDRVE EQ+A A LS+ TG R++GW+HSHPHITVLPSHVD++TQA YQ +D GF+GLI + F D + V++TAFQ++P D+D ++ G G +RK + +A+ P+A P + V+ +Q +L+ EE Y+ A + L ++ ++ +++A VY ++ L++ + P + LE+++ R+++ ++ V +E + V+ AA Sbjct: 1 MSLERVEVTNEVLLAVLAHAHSTESEEVMGLLLGD-VTDPVRGGGAVCRISLAFPQIRTDRRKDRVETSPEQMARCSAHAERLSRETGSRVRVVGWYHSHPHITVLPSHVDVRTQAMYQLLDPGFVGLIVSAFNRDAATEAATVQLTAFQALP-------------DVDP--------------------QAAG---GLIRKEVRLAVTPAA----------------TPLERSFSDVLVVQRMLLMEENEVYKKALASALAASSRSSAVGSGAFP-----------TPELVEVHHAGVYQAHMARLVQTALHPSLAALEALVAQQRQQEAQLTAEVAALEREVAAQVAAAA 288
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_016169865.1 (lys-63-specific deubiquitinase BRCC36 [Arachis ipaensis]) HSP 1 Score: 149.4 bits (376), Expect = 3.000e-32 Identity = 76/154 (49.35%), Postives = 103/154 (66.88%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPG 155 MSL V ++ E C T ALSTE +E+M +LLG H G ++ A + +R+DRRKDRVE EQLA A +A ++ +TGR TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + F D + GR+++ AFQS G Sbjct: 1 MSLTGVKMSEEVWLTCATHALSTETEEIMGLLLGD-IHHSKDGRHVTALIWGASPQTRSDRRKDRVETNPEQLAAASALADRMTSSTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSHDANKV-GRIQVIAFQSTDG 152
BLAST of NO13G02730 vs. NCBI_GenBank
Match: KFK32337.1 (hypothetical protein AALP_AA6G228600 [Arabis alpina]) HSP 1 Score: 148.7 bits (374), Expect = 5.100e-32 Identity = 120/381 (31.50%), Postives = 185/381 (48.56%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGREGGRALMMDLDN-------GFIRIDD-EDSTSYVHHSIGLESTGVETGTVRKGIPIALVPSAGGDGGREGGKGAGGNDGPTTDAMRCVVSLQEVLMQEERYFYEAAAQANLRNNAXXXXXXXXXXXXXXXXXXXXXRAGDVHAL---YNAAVYGKALSSLLEESAIPLIHTLESVLLNVRREKERVKRAVEKMEEHSRSSVSVAAGSMEGVMSVKEGGRKGRR 371 MSL V+++ + C+T ALSTE +E+M +LLG + + A + R+DR+KDRVE EQLA A +A ++ +TGR TR++GW+HSHPHITVLPSHVD++TQA YQ +D+GF+GLI + F +D + GR+++ AFQS G+ +++ L N ID ++S LE++G E VRK +P+ ++P++ + + + LQ VL +EER Y + Q ++ RAG V L +N + Y +L L+E P I+ L+ VR K R+ +E+ E + A S V+ GR+ R+ Sbjct: 1 MSLTCVNMSEDVWLTCLTHALSTETEEIMGLLLG--DIEYSENASATAMIWGASPQQRSDRQKDRVETDPEQLAAAAALADRMTISTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDASKV-GRIQVIAFQS-SAGKPNTSPKSMSPILANKDSVIYGSACEIDPMDESMQEAMLRSSLETSGAE--YVRKEVPLHVLPTS--------------SFLQLSSPLASFKDLQRVLYEEERAAYHQSLQQSM-------------------------RAGKVDPLIFIHNTSTYQASLCKLMEYCLSPAINALQD---RVRENKIRLAMLMEEAEVLEAQKLKGADTSGGPSRLVQSAGRRRRK 333
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_009293985.1 (lys-63-specific deubiquitinase BRCC36 [Danio rerio]) HSP 1 Score: 148.3 bits (373), Expect = 6.700e-32 Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M+++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 28 MAVNAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 180
BLAST of NO13G02730 vs. NCBI_GenBank
Match: 5CW6_A (Chain A, Structure Of Metal Dependent Enzyme Drbrcc36) HSP 1 Score: 148.3 bits (373), Expect = 6.700e-32 Identity = 75/159 (47.17%), Postives = 104/159 (65.41%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M+++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 3 MAVNAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 155
BLAST of NO13G02730 vs. NCBI_GenBank
Match: XP_017348615.1 (PREDICTED: lys-63-specific deubiquitinase BRCC36 isoform X1 [Ictalurus punctatus]) HSP 1 Score: 148.3 bits (373), Expect = 6.700e-32 Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 0 Query: 1 MSLHRVHLTHEALFCCVTQALSTEQQEVMSVLLGTWTTHPTTGENIEAEVQHVVVMSRTDRRKDRVEVGYEQLAEAEQVASALSKATGRETRILGWFHSHPHITVLPSHVDLQTQAQYQAMDAGFLGLICAVFQDDLKQQRGRVEITAFQSVPGGRGRE 160 M++ VHL +A C+ ALSTE++EVM + +G T N + V+++ R+D+RKDRVE+ EQL+ A A L++ TGR R++GW+HSHPHITV PSHVD++TQA YQ MD GF+GLI + F +D + GRV T FQSV +G E Sbjct: 1 MAISAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVDT------NRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAEMTGRPVRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSE 153 The following BLAST results are available for this feature:
BLAST of NO13G02730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02730 ID=NO13G02730|Name=NO13G02730|organism=Nannochloropsis oceanica|type=gene|length=1891bpback to top protein sequence of NO13G02730.1 >NO13G02730.1-protein ID=NO13G02730.1-protein|Name=NO13G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bpback to top Synonyms
Publications
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