NO13G02610, NO13G02610 (gene) Nannochloropsis oceanica

Overview
NameNO13G02610
Unique NameNO13G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr13:722314..723630 +

Link to JBrowse

Properties
Property NameValue
DescriptionActin-related protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:722314..723630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
Homology
BLAST of NO13G02610 vs. NCBI_GenBank
Match: EWM21911.1 (actin-related protein [Nannochloropsis gaditana])

HSP 1 Score: 623.6 bits (1607), Expect = 4.600e-175
Identity = 318/445 (71.46%), Postives = 365/445 (82.02%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAV----EGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDS--AFSSSSTSSSIPGP-QDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERFH 439
            MYCGDEVFSVVGDLGT +SRFGYAGEDLPK VFPSA+G+VV       +G RKK+  G A    S DV E A   +  +N +  LG+A IG+RRTDLELSFP+ NGHV++WDAVE IWAHAF Q++V++ AKGVP+MYALP WA+RAESQ   ELAFERF++GALYLARS MLSAFSTGR+SG+VCDCGAGSTSAVP+LDGYVL QLVGRSERGGDWLDGKVGEWL S+K  +  FG  +G + E MP  Y +FQEQRVLRDVKESCCL+PQ DSDDGA+FD+E+ND E G YELPDGT+VK DK L R+PE +M+ G+ +  + S +  S S  G   DLP +VY AVEKADVDVRKELLGNVILTG GSCFRG++ERLQ+ELTEKVPVAYKVK+VTATPLERRFSAWIGGSILASLGSFQQLWLSK EYEEMGAE A K+RFH
Sbjct:    1 MYCGDEVFSVVGDLGTQSSRFGYAGEDLPKVVFPSAIGNVVHRTGSEEDGDRKKKSTGGA----SSDV-EGAVVAKTKANTSGTLGEANIGIRRTDLELSFPLINGHVQDWDAVECIWAHAFEQLSVKEGAKGVPYMYALPAWASRAESQKSAELAFERFDLGALYLARSPMLSAFSTGRSSGVVCDCGAGSTSAVPILDGYVLNQLVGRSERGGDWLDGKVGEWLESRKAKIGLFGFERGTIPEYMPTTYWRFQEQRVLRDVKESCCLIPQVDSDDGAVFDIEENDAEKGAYELPDGTRVKADKTLCRIPELLMVRGDGAGCSISPADVSPSREGAFHDLPSMVYTAVEKADVDVRKELLGNVILTGGGSCFRGSSERLQYELTEKVPVAYKVKIVTATPLERRFSAWIGGSILASLGSFQQLWLSKAEYEEMGAELACKKRFH 440          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: CBN80027.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 299.3 bits (765), Expect = 2.000e-77
Identity = 178/484 (36.78%), Postives = 261/484 (53.93%), Query Frame = 0
Query:    5 DEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVV--DAVEGGRKKEKAGDAGASNSMDVDEAAAAGRI------------------GSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPP-------------------------------HYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERF 438
            DEV ++VGD+G  T +FGY GED PK VF S  G++    +++ G  K                                         G +   ++GD  +  RR  +E+  P+ +G + +WD VE++W HAF +  +R  A   P + A  +W+T  E + +MEL FE+F V A++ A++AMLSAFS GRA+ +VCDCG G+TSAVP++DG+VL + V R  RGGDWL  +    LA+K + +RP    Q   A  +P                                 Y       ++R++KE+C  +P  DS   +    E+++  +  Y LPDGT +++   LR +PE +M     +       + ++  P  LP L+  A+E++D D RKE++GNV+LTG GS F G  ER+  EL+  +P A+KV+ +TA+P+ERRFS WIGGSIL SLG+FQQLWLSK +YEE GA+ A   RF
Sbjct:   12 DEVATIVGDIGADTCKFGYGGEDSPKHVFLSTAGYLPGNTSIKEGMNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGESGRWLVGDLAVSRRRDGMEMRSPLVDGLLSDWDQVEKLWEHAF-RDRLRAVASERPVLVAEASWSTVKERRGLMELMFEKFGVPAMFPAKNAMLSAFSAGRATALVCDCGHGATSAVPVVDGFVLNRAVQRGIRGGDWLTQQTNAHLAAKGIQIRPRYALQQRGAASVPTTTAATSNGXXXXXXXXXXXXXKPEPFPGTTLSYANHMRMEIVRELKETCMSIPLEDSGSSS----EEDEGRETKYTLPDGTDIELTDELRHIPEVLMESSAMTPLHKQKENLALDLP--LPALMRRALEQSDADARKEMVGNVVLTGGGSLFEGMPERITSELSSSLPSAFKVRTLTASPIERRFSVWIGGSILCSLGTFQQLWLSKRQYEEQGADVAESRRF 488          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: KFK41829.1 (hypothetical protein AALP_AA2G176800 [Arabis alpina])

HSP 1 Score: 276.6 bits (706), Expect = 1.400e-70
Identity = 171/444 (38.51%), Postives = 252/444 (56.76%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAVEGGRKKEKAGDAGASNSMDV-DEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQ--GVVAEKMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAF-SSSSTSSSIPGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG VVD    G  +    DA  +NS D       + +        +G   +  RR  +E+  P+++G V +WD V+ +W HAF    + D  K  P + A P   T+ + +   EL FE+++V AL++A++ +L++F++GRA+ +V DCG GST+  P+LDGYVL++ V  S  GGD+L   + + L SK + ++P           G+ Q  GV        Y+ F ++ ++ D+K+S C VP    DD +  ++         YELPDG  ++I     +VP+ +  P          S +  +P  + LP +V   + K DVDVR+EL  +++L G  S  +   ERL+ +L E+ P + +VKV+ +    ERRFS WIGGSILASLGSFQQ+WLSK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVG-VVD----GNHEMDIDDAANTNSEDAKSNVEESVKEKGKRKIFVGSQALNFRRDQMEMLSPIKDGIVADWDMVDNVWDHAFRNCLMVD-PKEHPMLLAEPPLNTQQQREKAAELMFEKYQVPALFMAKNPVLTSFASGRATSLVVDCGGGSTTIAPVLDGYVLQKAVVSSPIGGDFLTDCLLKSLESKGIKIKPRYSFKRKETRPGEFQVTGVNVPDTTESYKLFCQRMIVSDIKDSICRVPDTPYDDKSYSNIPTTS-----YELPDGQTLEIGSDRFKVPDVMFNPYIVQTIPGMESYTDMLPSVRGLPNMVIECISKCDVDVRRELYSSILLAGGTSSMQQLKERLEKDLVEESPQSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWLSKSEYEEHGA 433          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: XP_015881979.1 (PREDICTED: actin-related protein 4 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 276.2 bits (705), Expect = 1.800e-70
Identity = 172/456 (37.72%), Postives = 262/456 (57.46%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV--VDAVEGGRKKEKAGDAGAS-----NSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVM-------LPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +  ++  +    ++ +G AG S     NS  +D   A GR        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  + D  K  P + A P+  T+ + +   EL FE+++V AL+LA++A+L++F++GRA+ +V D G GST+  P+ DGYVL++ V  S  GGD+L   + + L SK +T++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    D+ A  ++         YELPDG  ++I     ++P+ +        +PG +   S +  +SS+ G   LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:   58 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPANAEKNSGSAGESKNNSNNSKTLDSDKAKGR----RKLYVGSQALGFRRDHMEVLSPLKDGVVADWDLVDSIWDHAFRECLLID-PKEHPMLLAEPSSNTQQQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGDFLTDCLTKSLESKGITIKPRYSFKRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIANDIKECVCRAPDTPYDESAYSNIPMTP-----YELPDGQTIEIGADRFKIPDILFNPPLAQTIPGTE---SFAEIASSVRG---LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 497          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: XP_015881980.1 (PREDICTED: actin-related protein 4 isoform X2 [Ziziphus jujuba] >XP_015881981.1 PREDICTED: actin-related protein 4 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 276.2 bits (705), Expect = 1.800e-70
Identity = 172/456 (37.72%), Postives = 262/456 (57.46%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV--VDAVEGGRKKEKAGDAGAS-----NSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVM-------LPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +  ++  +    ++ +G AG S     NS  +D   A GR        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  + D  K  P + A P+  T+ + +   EL FE+++V AL+LA++A+L++F++GRA+ +V D G GST+  P+ DGYVL++ V  S  GGD+L   + + L SK +T++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    D+ A  ++         YELPDG  ++I     ++P+ +        +PG +   S +  +SS+ G   LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPANAEKNSGSAGESKNNSNNSKTLDSDKAKGR----RKLYVGSQALGFRRDHMEVLSPLKDGVVADWDLVDSIWDHAFRECLLID-PKEHPMLLAEPSSNTQQQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGDFLTDCLTKSLESKGITIKPRYSFKRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIANDIKECVCRAPDTPYDESAYSNIPMTP-----YELPDGQTIEIGADRFKIPDILFNPPLAQTIPGTE---SFAEIASSVRG---LPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 440          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: OQR96631.1 (actin-like protein [Achlya hypogyna])

HSP 1 Score: 275.8 bits (704), Expect = 2.300e-70
Identity = 171/441 (38.78%), Postives = 251/441 (56.92%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAVEGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKK-VTVRPFGQHQGVVAEKMP---PHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERF 438
            MYCGDEV + VGD+GT +S+FGYAGED P  + PS VG   +A      +   G +    + D+D   AA               I L          +++ +  +WD VE +WAHAF Q+ V      +    A  +    A +   MEL FE F   A YLA+ A+L+AFS G+++ +V D GAGST  VP++DG+VL     RS  GG+ L+ ++ + L  K  V + P  +     A   P     Y  F+   V+RD+KES CL+P+   ++    ++ D+ P +  YELPDG  V +     ++PE +M P    A S++  +SS    + L  ++Y+AV+ +DVDVR+ELL N++L G G+ F+G  ER+ +E+++ VP + KV++   TP+ER+FS WIGGSILASLGSFQQLW+SK E+EE GA+  +  RF
Sbjct:    1 MYCGDEVGAFVGDVGTLSSKFGYAGEDTPNCILPSVVGSKANA-----PRSVLGHSALYAAQDIDALPAA---------------ISL----------VDDKNAYDWDVVEVLWAHAFDQLHVNPTEHAI---LASLSPFDMAVAPKYMELMFETFRAPAFYLAKDAVLNAFSFGKSTALVADVGAGSTRVVPVVDGFVLHGSAQRSVVGGEALNAQMQKMLQDKHGVEIAPCVRKYETEATATPTLSEAYLNFRRLEVVRDIKESVCLMPETTLNE----ELADSTPAE-AYELPDGHVVSMGSERFKIPEKLMHPDVIGADSTTVATSS----KGLHRMLYSAVQSSDVDVRRELLHNLVLCGGGAGFQGLTERVHWEMSQMVPSSLKVRITQTTPVERKFSTWIGGSILASLGSFQQLWVSKREFEERGADHLIAARF 399          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: XP_024627426.1 (actin-related protein 4 isoform X1 [Medicago truncatula])

HSP 1 Score: 274.6 bits (701), Expect = 5.200e-70
Identity = 164/447 (36.69%), Postives = 255/447 (57.05%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV----VDAVEGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSI-PGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +    VD  +   K   +G++  +N  +VD   A G+        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  +  + K  P + A P+   + + +   EL FE+++  AL+LA++A+L++F++GRA+ +V DCG GST+  P+ DGYVL++ V  S  GG++L   + + L SK + ++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    D+ A  ++         YELPDG  ++I     ++P+ +  P    +     + + I P  + LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDNAEKNSGSGES-KNNIRNVDGDKAKGK----RKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRECLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIAMKPRYSFRRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPTTS-----YELPDGQTIEIGADRFKIPDVLFNPSLAHSIPGMESFAEIAPSVRGLPQMVIQSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 437          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: XP_016175792.1 (actin-related protein 4 [Arachis ipaensis])

HSP 1 Score: 274.2 bits (700), Expect = 6.800e-70
Identity = 164/447 (36.69%), Postives = 249/447 (55.70%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV----VDAVEGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSI-PGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +    +D  E G K          NS    +A    +        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  + D  K  P + A P+  T+ + +   EL FE+++  AL+LA++A+L++F++GRA+ +V DCG GST+  P+ DGYVL++ V  S  GG++L   + + L SK + ++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    DD A  ++         YELPDG  ++I     ++P+ +  P          + + + P  + LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDEAENGEK----------NSESTADAKNNDKPKGKRKLYVGSQSLGYRRDHMEVVSPLKDGIVADWDIVDNIWDHAFRECLLID-PKEHPMLLAEPSSNTQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIVIKPRYSFRRKEIRPGEFQTVDIDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDDSAYSNIPMTP-----YELPDGQTIEIGSDRFKIPDVLFNPSLVQTIPGMESFAEVAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 431          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: ACJ85813.1 (unknown [Medicago truncatula] >AFK47724.1 unknown [Medicago truncatula])

HSP 1 Score: 273.9 bits (699), Expect = 8.900e-70
Identity = 164/447 (36.69%), Postives = 255/447 (57.05%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV----VDAVEGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSI-PGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +    VD  +   K   +G++  +N  +VD   A G+        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  +  + K  P + A P+   + + +   EL FE+++  AL+LA++A+L++F++GRA+ +V DCG GST+  P+ DGYVL++ V  S  GG++L   + + L SK + ++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    D+ A  ++         YELPDG  ++I     ++P+ +  P    +     + + I P  + LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGES-KNNIRNVDGDKAKGK----RKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRECLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIAMKPRYSFRRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPTTS-----YELPDGQTIEIGADRFKIPDVLFNPSLAHSIPGMESFAEIAPSVRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 437          
BLAST of NO13G02610 vs. NCBI_GenBank
Match: XP_003615307.2 (actin-related protein 4 isoform X1 [Medicago truncatula] >AES98265.2 actin-related protein ARP4 [Medicago truncatula])

HSP 1 Score: 273.9 bits (699), Expect = 8.900e-70
Identity = 164/447 (36.69%), Postives = 255/447 (57.05%), Query Frame = 0
Query:    1 MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHV----VDAVEGGRKKEKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPMENGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVMELAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVLKQLVGRSERGGDWLDGKVGEWLASKKVTVRPF----------GQHQGVVAE--KMPPHYRQFQEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKIDKALRRVPESVMLPGNDSAFSSSSTSSSI-PGPQDLPGLVYAAVEKADVDVRKELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVV-TATPLERRFSAWIGGSILASLGSFQQLWLSKLEYEEMGA 430
            MY GDEV ++V DLG+ T + GYAGED PKAVFPS VG +    VD  +   K   +G++  +N  +VD   A G+        +G   +G RR  +E+  P+++G V +WD V+ IW HAF +  +  + K  P + A P+   + + +   EL FE+++  AL+LA++A+L++F++GRA+ +V DCG GST+  P+ DGYVL++ V  S  GG++L   + + L SK + ++P           G+ Q V  +       Y+ + ++ +  D+KE  C  P    D+ A  ++         YELPDG  ++I     ++P+ +  P    +     + + I P  + LP +V  ++ K DVD+R+EL  +++L G  +  +   ERL+ +L E+ P A +VKV+ +    ERRFS WIGGSILASLGSFQQ+W SK EYEE GA
Sbjct:    1 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDESDDAEKNSGSGES-KNNIRNVDGDKAKGK----RKLYVGSQSLGYRRDFMEVVSPLKDGIVADWDIVDSIWDHAFSRECLLIDPKEHPMLLAEPSSNAQQQRERAAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDCGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIAMKPRYSFRRKEIRPGEFQTVDLDFPNTSESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPTTS-----YELPDGQTIEIGADRFKIPDVLFNPSLAHSIPGMESFAEIAPSVRGLPQMVIDSINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGA 437          
The following BLAST results are available for this feature:
BLAST of NO13G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21911.14.600e-17571.46actin-related protein [Nannochloropsis gaditana][more]
CBN80027.12.000e-7736.78conserved unknown protein [Ectocarpus siliculosus][more]
KFK41829.11.400e-7038.51hypothetical protein AALP_AA2G176800 [Arabis alpin... [more]
XP_015881979.11.800e-7037.72PREDICTED: actin-related protein 4 isoform X1 [Ziz... [more]
XP_015881980.11.800e-7037.72PREDICTED: actin-related protein 4 isoform X2 [Ziz... [more]
OQR96631.12.300e-7038.78actin-like protein [Achlya hypogyna][more]
XP_024627426.15.200e-7036.69actin-related protein 4 isoform X1 [Medicago trunc... [more]
XP_016175792.16.800e-7036.69actin-related protein 4 [Arachis ipaensis][more]
ACJ85813.18.900e-7036.69unknown [Medicago truncatula] >AFK47724.1 unknown ... [more]
XP_003615307.28.900e-7036.69actin-related protein 4 isoform X1 [Medicago trunc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR024ncniR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001634NSK001634Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02610.1NO13G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596203gene_6749Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|618440gene_11397Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g8gene8514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02610.1NO13G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02610 ID=NO13G02610|Name=NO13G02610|organism=Nannochloropsis oceanica|type=gene|length=1317bp
ATGTATTGTGGGGACGAGGTCTTCTCCGTGGTGGGCGATTTAGGCACGGC
CACCAGCCGCTTTGGATATGCCGGGGAGGACTTGCCCAAAGCTGTCTTTC
CCTCGGCCGTAGGACATGTGGTGGATGCGGTGGAGGGTGGCAGGAAGAAG
GAAAAGGCAGGCGACGCAGGGGCATCGAACAGTATGGACGTAGATGAGGC
CGCCGCTGCCGGAAGGATCGGTAGCAATGCTGCAGCTGTACTTGGAGACG
CGAAAATTGGACTTCGACGAACGGATTTAGAACTATCTTTTCCCATGGAG
AACGGGCACGTGCGGAATTGGGATGCAGTGGAGAGGATTTGGGCCCACGC
GTTTGGACAAATAGCCGTACGGGACGAAGCCAAGGGTGTTCCTTTCATGT
ACGCCTTGCCCACGTGGGCCACGCGCGCCGAGAGTCAAACAGTGATGGAG
CTGGCTTTTGAAAGGTTTGAAGTGGGTGCTTTGTATTTGGCGCGGTCGGC
CATGTTGAGTGCGTTCTCCACCGGTCGGGCGAGTGGGATTGTGTGTGATT
GCGGCGCTGGCTCGACGAGTGCTGTGCCGTTATTGGATGGATATGTGCTA
AAGCAGCTGGTGGGGAGAAGTGAGAGGGGCGGGGACTGGTTGGATGGAAA
GGTTGGGGAGTGGTTGGCCTCGAAAAAAGTAACGGTGAGACCGTTTGGGC
AGCATCAGGGGGTGGTGGCAGAAAAGATGCCTCCGCATTACCGGCAGTTC
CAGGAACAACGCGTGCTGCGCGATGTGAAGGAGAGTTGTTGTTTGGTCCC
GCAGGCAGATAGTGACGATGGGGCTATGTTTGATGTGGAGGATAACGACC
CGGAGGACGGAGTATACGAGCTCCCCGACGGCACCAAGGTCAAAATTGAC
AAGGCCCTCCGGCGGGTGCCGGAATCTGTCATGCTCCCAGGGAATGACAG
TGCTTTTTCCTCCTCTTCCACGTCGTCATCAATACCAGGACCGCAGGATC
TACCGGGGTTGGTGTACGCAGCGGTGGAGAAGGCGGATGTGGACGTGCGG
AAAGAGTTGTTGGGAAACGTGATTTTGACGGGAGCGGGTAGCTGTTTCCG
TGGAGCAGCAGAACGATTGCAATTTGAACTGACAGAGAAAGTGCCAGTGG
CGTACAAGGTGAAGGTCGTGACGGCCACGCCGTTGGAGAGGCGGTTTAGT
GCGTGGATTGGAGGGTCCATTTTAGCGTCCTTAGGCTCGTTTCAGCAGCT
GTGGCTATCCAAGCTAGAGTATGAGGAAATGGGAGCCGAAAGGGCTCTCA
AGGAGAGGTTTCACTGA
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protein sequence of NO13G02610.1

>NO13G02610.1-protein ID=NO13G02610.1-protein|Name=NO13G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MYCGDEVFSVVGDLGTATSRFGYAGEDLPKAVFPSAVGHVVDAVEGGRKK
EKAGDAGASNSMDVDEAAAAGRIGSNAAAVLGDAKIGLRRTDLELSFPME
NGHVRNWDAVERIWAHAFGQIAVRDEAKGVPFMYALPTWATRAESQTVME
LAFERFEVGALYLARSAMLSAFSTGRASGIVCDCGAGSTSAVPLLDGYVL
KQLVGRSERGGDWLDGKVGEWLASKKVTVRPFGQHQGVVAEKMPPHYRQF
QEQRVLRDVKESCCLVPQADSDDGAMFDVEDNDPEDGVYELPDGTKVKID
KALRRVPESVMLPGNDSAFSSSSTSSSIPGPQDLPGLVYAAVEKADVDVR
KELLGNVILTGAGSCFRGAAERLQFELTEKVPVAYKVKVVTATPLERRFS
AWIGGSILASLGSFQQLWLSKLEYEEMGAERALKERFH*
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Synonyms
Publications