NO13G02570, NO13G02570 (gene) Nannochloropsis oceanica

Overview
NameNO13G02570
Unique NameNO13G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2524
Alignment locationchr13:712651..715174 -

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Properties
Property NameValue
DescriptionZinc finger family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:712651..715174 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_005856328.1 (zinc finger family protein [Nannochloropsis gaditana CCMP526] >EKU20031.1 zinc finger family protein [Nannochloropsis gaditana CCMP526] >EWM21910.1 Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 2.400e-42
Identity = 102/208 (49.04%), Postives = 125/208 (60.10%), Query Frame = 0
Query:   93 WACVVTTGILLAGLTFLWLRLRL-----HRNSSTQNRS-TSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARLQLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            W  +V    L       WLR RL      R       S  + CS AL  +CF+WYRQS TSS S  S+   R  G +R L GH +AV+E  ALS    + +RLQLML  RDF+ +DYE+LSRLDE            +G +  EL+RLP Y V++E    +  +KC ICL+DF KG+VVRILPCLHQFHQ+EC DPWLRRKM CPVCK
Sbjct:    2 WILIVIISALSGAAFLYWLRSRLQCGIQRRGDDADMLSFQAACSHALSGECFSWYRQSRTSSQS--SFITGRRSGGVRRLIGHQIAVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHL----LGATDAELERLPTYIVDTE----TKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCK 199          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: OQR85603.1 (hypothetical protein ACHHYP_20563 [Achlya hypogyna])

HSP 1 Score: 102.8 bits (255), Expect = 1.800e-18
Identity = 54/118 (45.76%), Postives = 67/118 (56.78%), Query Frame = 0
Query:  183 MMNLARLQLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTV-ESEWNGHSD-----NSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            ++  A LQL+LT RDF  +DYE L +LD+             G S  E+DRLPV TV ES   GH D     N +C ICL D   G   R++PC H+FH  EC+DPWL  K  CP+CK
Sbjct:   76 LLTRAHLQLLLTDRDFDSNDYEQLLQLDDHNVQKSH------GASDGEIDRLPVVTVTESMLKGHKDTTGLENIQCSICLEDLTLGSQARMVPCFHRFH-PECIDPWLSEKAECPICK 186          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_009538583.1 (hypothetical protein PHYSODRAFT_356170 [Phytophthora sojae] >EGZ05722.1 hypothetical protein PHYSODRAFT_356170 [Phytophthora sojae])

HSP 1 Score: 100.9 bits (250), Expect = 7.000e-18
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 0
Query:  189 LQLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            LQL+L+ RDF  +DYE L RL+            H G + +++ +LPV  V       S+N+ C +CLS F  G  VR++PC H+FH  EC+DPWL+ K LCP+CK
Sbjct:   88 LQLLLSNRDFDSNDYERLMRLE------TLNERRHEGATPQQIQQLPVVAVTEGMLQASENASCTVCLSTFELGGCVRMMPCFHRFH-PECIDPWLQEKALCPICK 186          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_002183877.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44546.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.0 bits (245), Expect = 2.700e-17
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 0
Query:  183 MMNLARLQLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWN-------GHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            M+NL+ L+L++  R+ TGDDY  L R +E           H+G SQ+E+DRLP+  +    +          D   C ICL  +   D VR +PC H FH++ C+DPWLR+K  CP+CK
Sbjct:  195 MINLSSLRLVMRGRELTGDDYAALLRFNEESGPALESLLNHVGLSQQEIDRLPLRRLSDPMDEVLRRPMSEEDLPLCTICLEPYRLEDEVRSIPCFHYFHKS-CIDPWLRQKASCPICK 312          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_012209522.1 (hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65] >KDO19760.1 hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 98.6 bits (244), Expect = 3.500e-17
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 0
Query:  183 MMNLARLQLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTV-ESEWNGH-----SDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            +++ A LQL+LT RDF  +DYE L +LDE             G S+ ++DRLPV TV E+   GH     SD  +C ICL D A G + R++PC H+FH  EC+D WL  K  CP+CK
Sbjct:   80 LLSRAHLQLLLTDRDFDSNDYEQLLQLDEHNVAKSH------GASEGDIDRLPVVTVTETMLQGHKEATGSDAIQCSICLEDLAVGALARMVPCFHRFH-PECIDLWLFEKAECPICK 190          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_022924728.1 (uncharacterized protein LOC111432144 isoform X1 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 7.700e-17
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  114 RLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARL--QLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            R  R+ S+QN S  T +    S      R      S   S R R  +  +       L + EA   + G M  AR+   ++ + RDF  +DYEML  LDE           H G S   ++ LP  TV+++    S    C ICL   A GDV+R LPCLH+FH+ +C+DPWL+R+  CPVCK
Sbjct:  644 RRTRSQSSQNSSNITRTRVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDE-------NNHRHAGASTNRINSLPQSTVQTD----SMEDPCAICLDTPAIGDVIRHLPCLHKFHK-DCIDPWLQRRTSCPVCK 814          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_022924729.1 (uncharacterized protein LOC111432144 isoform X2 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 7.700e-17
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  114 RLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARL--QLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            R  R+ S+QN S  T +    S      R      S   S R R  +  +       L + EA   + G M  AR+   ++ + RDF  +DYEML  LDE           H G S   ++ LP  TV+++    S    C ICL   A GDV+R LPCLH+FH+ +C+DPWL+R+  CPVCK
Sbjct:  587 RRTRSQSSQNSSNITRTRVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDE-------NNHRHAGASTNRINSLPQSTVQTD----SMEDPCAICLDTPAIGDVIRHLPCLHKFHK-DCIDPWLQRRTSCPVCK 757          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_022980220.1 (uncharacterized protein LOC111479662 isoform X1 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 7.700e-17
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  114 RLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARL--QLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            R  R+ S+QN S  T +    S      R      S   S R R  +  +       L + EA   + G M  AR+   ++ + RDF  +DYEML  LDE           H G S   ++ LP  TV+++    S    C ICL   A GDV+R LPCLH+FH+ +C+DPWL+R+  CPVCK
Sbjct:  655 RRTRSQSSQNSSNITRTRVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDE-------NNHRHAGASTNRINSLPQSTVQTD----SMEDPCAICLDTPAIGDVIRHLPCLHKFHK-DCIDPWLQRRTSCPVCK 825          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_022980221.1 (uncharacterized protein LOC111479662 isoform X2 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 7.700e-17
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  114 RLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARL--QLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            R  R+ S+QN S  T +    S      R      S   S R R  +  +       L + EA   + G M  AR+   ++ + RDF  +DYEML  LDE           H G S   ++ LP  TV+++    S    C ICL   A GDV+R LPCLH+FH+ +C+DPWL+R+  CPVCK
Sbjct:  617 RRTRSQSSQNSSNITRTRVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDE-------NNHRHAGASTNRINSLPQSTVQTD----SMEDPCAICLDTPAIGDVIRHLPCLHKFHK-DCIDPWLQRRTSCPVCK 787          
BLAST of NO13G02570 vs. NCBI_GenBank
Match: XP_023528405.1 (uncharacterized protein LOC111791348 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 1.000e-16
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 0
Query:  114 RLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSSSPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARL--QLMLTTRDFTGDDYEMLSRLDEXXXXXXXXXXXHMGCSQEELDRLPVYTVESEWNGHSDNSKCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCK 295
            R  R+ S+QN S  T +    S      R      S   S R R  +  +       L + EA   + G M  AR+   ++ + RDF  +DYEML  LDE           H G S   ++ LP  TV++    +S    C ICL   A GDV+R LPCLH+FH+ +C+DPWL+R+  CPVCK
Sbjct:  655 RRTRSQSSQNSSNITRARVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDE-------NNHRHAGASTNRINSLPQSTVQT----NSMEDPCAICLDTPAIGDVIRHLPCLHKFHK-DCIDPWLQRRTSCPVCK 825          
The following BLAST results are available for this feature:
BLAST of NO13G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856328.12.400e-4249.04zinc finger family protein [Nannochloropsis gadita... [more]
OQR85603.11.800e-1845.76hypothetical protein ACHHYP_20563 [Achlya hypogyna... [more]
XP_009538583.17.000e-1843.40hypothetical protein PHYSODRAFT_356170 [Phytophtho... [more]
XP_002183877.12.700e-1739.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_012209522.13.500e-1744.92hypothetical protein SPRG_15094 [Saprolegnia paras... [more]
XP_022924728.17.700e-1736.07uncharacterized protein LOC111432144 isoform X1 [C... [more]
XP_022924729.17.700e-1736.07uncharacterized protein LOC111432144 isoform X2 [C... [more]
XP_022980220.17.700e-1736.07uncharacterized protein LOC111479662 isoform X1 [C... [more]
XP_022980221.17.700e-1736.07uncharacterized protein LOC111479662 isoform X2 [C... [more]
XP_023528405.11.000e-1636.07uncharacterized protein LOC111791348 isoform X1 [C... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001637NSK001637Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02570.1NO13G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596219gene_6753Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g11gene8517Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02570.1NO13G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02570 ID=NO13G02570|Name=NO13G02570|organism=Nannochloropsis oceanica|type=gene|length=2524bp
CTTATGCAGAAGCATGCCTCCTGTAGGTGTGTGTTGATGTGTGTGTTCAG
GGGGGTTAGGCGTCGAAATGCGGACTGCGGAAGGCAACGAAGATGCCAGA
CACACAGGAAACAGTCCACGCAGTGCTCAGCACGTGGTTGCCGCCGTCAT
CTTGTCGTCACGTGGCGGTCACTGGTAGCATCCGCACGTGTTTACCAAGT
ACATGCCGTGTGCGTTGCCGTGCGCAGTAGCGAAATTTGGCGAAGGCGCG
GGAAGAAGACATCAGGCTCGGAACGATTCTCCATTTTTTCAGTTTGGCCT
TTAATTCTTCCTTGACAAGGTCGATTCTGCTACTGCGCATGCTGCCTTTC
CTTTCTAACAAAAATTAAAGTACTACCTCTTTGCTCTCACCACCAATCCC
GGGTTTTCCTGTCTAATTCTCACGGTCTCCTTTCCCCTCTCCTTCGCCCC
CTCTTAAAATTAATACGCGAGCACCCAAAAAACCAAAGGCCACTTTGAAG
GACAAGACCCATCGTGCCCCCGATTCACACAGGCCATTAAGATCCAGCTG
GAAAAACGCGGTATCGAATCACCAATCTACATTGCCATCAGCCAAAATGT
CGGAAGCGGTTCTGAAAAACATTGAAAAAGAATTGCCCAGATTGCAGGCC
GAGCTCGTCAAAATGAAGGAAGCAGCCCCCAAGTCCGAGGCCTTAGTAGA
TCTGATCAACTACATTGTTCAAACACCTGAGCCATTCTATGGCAACGCCC
CCCCCAACAACCCGTGGCTCAAACCTGCCGCCACACCCTGCTGTACTGTA
TCGTAGTTAAATTTTGGTTTTGGGGGAGGGGAGAGAATGGGAAAGATGGA
GGGAAAAAAAGGCAATGGAAACCAATTACCTGGGGCTTGAAAGAAAGAAA
AGAATTGAAATACATTTAGTAAGATTGTTACTCGTGTCATGAGTCTGGGT
GTAAATCGTTGGTGGTTTCGGGCTCAGGGGTAGACGCAGGGCCATGCTTT
AGCAAGCACGTATCCAATCCAAATTTTCCAGGGGCGCTTTCTTAGAGCAA
TACCTTAATTCAGAAAGAAAAAGGATGAAAACTGTGGCGTGCTTGGACTT
GTAAATGGGATTGTTGGCAAGGTGTCGACGACAATGTATGCTGGAGGTAA
TAGTCCGCGAAGGTTGGATACGTGTCATTTTTTTCTCGAGCCCTTTATTT
TCTAACACATCCCCACCCACCACTCAATCCACGGATACCTGCAGGGTGCA
AGGAGCGATGAGCAACGACGTCGATCACACGGTTGTTGTGGTTGAAACCC
CACAGCTGCCCGCCGTCATCCTCGTCCTCGTCCTCTCCTCGGTCCTGTTC
CTGTGTTCGgtaagcgatgaatgaagtgcaggagtggacattctgtcttg
tgtatgtgtggttgtacatgccaagacgggggaagcctgacgtagcctct
agagataatatcagtggctctccaacgccctacattttcatcttttcctg
gctatcatcccgcgtcctcctcaagctcgtacactcattcttgaaccctg
cgcaacacaacacattcacagCCTTCCAACTCCAACTGGGCATGGGCTTG
CGTGGTGACCACGGGTATATTGCTCGCTGGATTGACCTTTCTGTGGTTAC
GCCTCCGCCTCCATCGAAACAGCTCCACCCAAAATCGCAGCACTTCCACA
TGCTCTCCCGCTCTGGTCAGTGACTGCTTCACTTGGTACCGACAATCTCA
CACTTCATCTTCGTCATCTCCCTCTTATCGCTTACGGAGAAGCGATGGAA
ATATGCGACATTTATTTGGACATCATTTGGCAGTACAGGAAGCAGCGGCA
CTGTCGGGAGGGATGATGAACCTGGCTCGCTTACAGCTTATGTTGACTAC
TCGTGATTTCACCGGAGACGACTACGAGATGCTCTCACGGTTAGACGAGG
AGGACGAGCAGCAGCAGCAGCTACAGCAGCAACATATGGGTTGTTCGCAA
GAGGAGTTGGACCGCTTGCCTGTGTATACGGTGGAGAGTGAATGGAATGG
TCATAGTGACAATTCCAAGTGTCTGATTTGTTTGAGCGATTTCGCTAAGG
GGGATGTGGTGCGGATTTTGCCTTGTTTGCATCAGTTCCACCAGGCAGAG
TGTGTGGACCCATGGTTGAGACGAAAGATGCTTTGTCCGGTGTGTAAGAT
TGCCTTCTAGGCAGGGTAGGAGGAAGTTGGTTGCCTTCATATGAGGAAGA
GGAAGAGGAGGGAGAGATGAGGAGGAGGATGAGGATGAGGAGAAGGATGA
TGATGATGATGATTAGAAGAAGGGAGAAAAATATTGTACATAGAAAATAG
ACGCCTTGCATATATAACAGCATGTGAAGGGGGGAGAGGAAAGAGATGAG
AGCCACAAAAAGACCGACACGTTAATATACACTGTTCATTCGCTGTCTTT
CCCCCCCCTCCCCCCACCAGTTTATGTGACATTCTCGTCCATCGGTAAAA
GAAACGAAGCAAAAAGTGTTTGTG
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protein sequence of NO13G02570.1

>NO13G02570.1-protein ID=NO13G02570.1-protein|Name=NO13G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MGLLARCRRQCMLEVIVREGWIRVIFFSSPLFSNTSPPTTQSTDTCRVQG
AMSNDVDHTVVVVETPQLPAVILVLVLSSVLFLCSPSNSNWAWACVVTTG
ILLAGLTFLWLRLRLHRNSSTQNRSTSTCSPALVSDCFTWYRQSHTSSSS
SPSYRLRRSDGNMRHLFGHHLAVQEAAALSGGMMNLARLQLMLTTRDFTG
DDYEMLSRLDEEDEQQQQLQQQHMGCSQEELDRLPVYTVESEWNGHSDNS
KCLICLSDFAKGDVVRILPCLHQFHQAECVDPWLRRKMLCPVCKIAF*
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Synonyms
Publications