NO13G02530, NO13G02530 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02530 vs. NCBI_GenBank
Match: EWM21927.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 656.4 bits (1692), Expect = 6.600e-185 Identity = 335/451 (74.28%), Postives = 372/451 (82.48%), Query Frame = 0 Query: 1 MERIAALSLTIPPPEICTKTPDGSPRALGIPKKIPERRIVSSLPGSSSPVPSSPASWKGSSQSSVALGPTAAGTPTSRTMLHRFHTSSPRALGLRSPLSGMRSGLGAGWTRAIVDLYQTEDPDEMMRILMEIQALLRVQKMGNGRHAGGNKEQQHAKFCKKDLEAALNEKKKKMPLLFTPGIRRFSLELLAEFFDKDHLNKLPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKGAARSLGKQGAASFFSRDAAAAAAAVGASCSIM 452 ME+IAALSLTIPP + T +GSP G+PK PERR +S P S P PSSPASWKG SQSSV LGPT AGTP R ML+RF+TSSPRALGLRSP+SGMRSGLGAGWTRAIVDLY +DP++M+R L EIQ+LLR QK+G AG KEQQ +KFCKKDLEAALNEKKKK P LF P +RR SLE++AEFFDKD +NKLPSA+L+YT SF+S S+LG+AASVCQQWKE V S AVWKPLY+KRF+FL +P + G L +Q FR RLLDP VGD VEVAWKGKFRLES+DIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWV RDRLRWT+EQDLNK+I PNDDVEIWCCGSNVPGAWLEAKVR+VKGQ YCVGRVLSSGALWV RERVR+SPKG ARSLGKQGA++FFSRDAAAAAAAVGASCS+M Sbjct: 1 MEQIAALSLTIPPQRAYSSTSEGSPCVSGLPKTFPERRFLSGSP-RSIPGPSSPASWKG-SQSSVPLGPTGAGTPNGRIMLNRFNTSSPRALGLRSPMSGMRSGLGAGWTRAIVDLYNAQDPEQMIRCLQEIQSLLRTQKLGK---AGVAKEQQQSKFCKKDLEAALNEKKKKNPNLFIPDVRRLSLEVMAEFFDKDRVNKLPSAVLIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDAST------------GIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBJ32449.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 186.4 bits (472), Expect = 1.900e-43 Identity = 96/221 (43.44%), Postives = 127/221 (57.47%), Query Frame = 0 Query: 225 VCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAA------------------VTAATAAPATGGGSS----RLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQDLNKKIG----PNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSGALWVERERVRMSPKG 420 V Q ++E D +W+ Y +RF L + +++A AT A+G SS + F+ ++++RLLDP VGD V+VAWKGKFRLESL++Y G AWW A VV+KGE YK+HYPGW+ +WDEWV RDRLRW E G D VE+WC G +VPGAWLEA V V+ ++ +G VL+SG W E VR+ KG Sbjct: 71 VLQDFREAAEGDGLWREAYDERFPVLQSETSESAGQGGPDAGGGGCGPVDCREATATKPTASGRNSSTGDEKGDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKG 291
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBN75917.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 181.4 bits (459), Expect = 6.200e-42 Identity = 93/223 (41.70%), Postives = 128/223 (57.40%), Query Frame = 0 Query: 202 LPSALLVYTTSFLSTSQLGVAASVCQQWKEVVGSDAVWKPLYVKRFNFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTIEQD-LNKKIGPNDDVEIWCCGSNVPGAWLEAKVRRVKGQKYCVGRVLSSG--ALWVERERVRMSPKGAA 422 LP LL + L+ LG V + W+ DAVW+ + +RF P G +R +Q R RL DP VGD VEV+W+G+FRLESLD++ G +WW A VV+K +G +YKIHYPGWDS WDEWV RDRLRW ++ L+ + VE+WC G++V GAWL+A+VR++K + + VL+S +WV R +VR GA+ Sbjct: 29 LPRELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFR---------------EDPPPQRGRARAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQK-MDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGAS 235
BLAST of NO13G02530 vs. NCBI_GenBank
Match: CBJ33111.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.6 bits (301), Expect = 1.300e-23 Identity = 72/213 (33.80%), Postives = 99/213 (46.48%), Query Frame = 0 Query: 224 SVCQQWKEVVGSDAVWKPLYVKRF-------NFLSAPGTKAAVTAATAAPATGGGSSRLLPFQQQFRKRLLDPSVGDSVEVAWKGKFRLESLDIYQGLAWWSAVVV---------------EKGENG---------------ARYKIHYPGWDSRWDEWVPRDRLRWTIEQ------DLNKKIGP----NDDVEIWCCGSNVPGAWLEAKVRR 390 +V ++W + GSD +W PLY +RF G TAA + +G ++ F FR RL P VGD VEVAWKGKFRL+ ++ GL+WW A VV E GE+G R+ +HY W RWDEW+ R+RW + + GP + + E+WC G + GAWLEA+V + Sbjct: 2 AVSRRWHRIGGSDFMWLPLYSRRFGPAASLPELFERVGLDPGDTAAASKRRSG-----MVRF--AFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARVHK 207 The following BLAST results are available for this feature:
BLAST of NO13G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02530 ID=NO13G02530|Name=NO13G02530|organism=Nannochloropsis oceanica|type=gene|length=2427bpback to top protein sequence of NO13G02530.1 >NO13G02530.1-protein ID=NO13G02530.1-protein|Name=NO13G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bpback to top Synonyms
Publications
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