NO13G02520, NO13G02520 (gene) Nannochloropsis oceanica

Overview
NameNO13G02520
Unique NameNO13G02520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2354
Alignment locationchr13:701968..704321 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:701968..704321 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02520 vs. NCBI_GenBank
Match: EWM21923.1 (hypothetical protein Naga_100070g17 [Nannochloropsis gaditana])

HSP 1 Score: 117.9 bits (294), Expect = 1.000e-22
Identity = 122/373 (32.71%), Postives = 181/373 (48.53%), Query Frame = 0 
Query:  111 DVLLLLEEREVLREQLRQQIAEKGELERQHRADKERLAVVEEALDESTRMYKHAKEAAQQCSNDATEAMAELRTSQILREQLHTSLETALGELERLYAGMHS-DSGLLQSDGRAMGLAQEQQQQADTHLPLDDNTA--YDLTYAQRRASVIIHMLELLHERFAVTVTFRRAFALRIFFAFWRERFPSLFSEIEVGEEGEEIEYGAEGVLVAAGGARGRARCMINNCVSLVEDILXXXXXXXXXXXXXXXXXXXXXXXPQQLRFRSSTLRPTLSLRGGERESPAPSFVSAPSSLADRGRERLLRKEVADLQAEVQSREEVQNVLLDILASYER---KNLDLNFADSGEEV--WWEEGSVSG-----GRKGEEGA 471
            DVLLLLEERE LR+QL          E+  R D E+L  VE A++ +T+MY+HAK AAQ+CS DA +AM ELR S  L+ +LH SL+ A+ +L RL   + + +SG +          +E + + D  + L+ + A   ++T A+RRA+V+IH+LE L  R    +  R     R +F  W  R   L    + G +G   +   E     +  A G  R ++++CV+LV+DIL                         Q + +     P  S   G+  S  P  +       D    R+L ++V   Q   Q++ EVQ+VLLDILA+YE+      D +  D  +E    WE  S+S      G  G EG+
Sbjct:  116 DVLLLLEEREALRQQL--------AAEKCAREDLEKLKTVEAAMERTTQMYRHAKHAAQRCSEDANQAMVELRESHALQSKLHASLDAAVHQLYRLRLTVQAEESGTILRH-------EEHKNEGDLEVGLEASNASSQNMTDAERRAAVVIHLLERLQNR-PTLIQLRSDTVKRCYFGLW--RLCLLQKWQDDGWQGTLAQVDNE----ISSVADGNVRKVVDSCVNLVQDILHQPGLHQRL----------------QGQHQRGQYSPPTSTSLGDALSQPPWHLLG----EDFRGHRVLARDVGS-QPRSQTQREVQDVLLDILATYEKILLNETDFDRIDGLDETNDKWESNSLSSWSADEGLTGGEGS 445
The following BLAST results are available for this feature:
BLAST of NO13G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21923.11.000e-2232.71hypothetical protein Naga_100070g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001642NSK001642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02520.1NO13G02520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596234gene_6759Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g17gene8522Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02520.1NO13G02520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02520 ID=NO13G02520|Name=NO13G02520|organism=Nannochloropsis oceanica|type=gene|length=2354bp
ACAGACGCACTCAAAATTTTGCCTTCATCGTGATCTGGATGGCTGCGCGG
TTGCTGTCGGCCGGCAGGAGATAGAGAAGGACCAAGCAGCTAGCCTCCCT
CCCCCAGTCCTCATTACACGAGCACCAGTTGGCTCTCCATTTGGTCCAAG
CGACGCGATAACGTATAGGATGGAGTCATCTTTGTCGTCGGGTGGAGGAT
TCCCCTTTGAGCGGAGTCCTCCTTACGACGGTACGAATGGTGACGGCTTT
ACCCAACGAGCGCCTTCCCAGGAGGAAGGGAGCATCGAGCATGAAGGCCA
AGAGCAGGACCATCAGTGGACAGGCCCACCACCACCCCCGTCCCAACCTC
CTCCTCCACCACGACCAGCTTCGCGACAATATCTCCAGCAGCCGATCCTG
CCACCATCACCCTCGGCGTCGACTTTCATCCCAGCTTCTGGCGCTCAACA
GCAGCAATGGCCCCCTTCCCACACGAGTCCAGCGGGAGCAGAGGATGCAG
ACGTCTTGCTGCTGCTGGAGGAAAGAGAAGTCTTGCGGGAACAACTCCGG
CAACAGATTGCTGAGAAGGGGGAGCTTGAGAGGCAGCATCGGGCAGACAA
GGAACGACTTGCGGTGGTAGAGGAGGCTTTGGACGAAAGCACGCGCATGT
ACAAGCATGCCAAAGAAGCCGCACAGCAATGCTCAAATGATGCCACgtga
gtatgaagaaagggaaggtattggaggacagtattccacctatatagcat
ttgaatgatgccactactttggtcttaagacgtcattgtcgcaacgctgc
agctattcaaaaggacaaaataagaacgtactcactgataataccctttc
ccttcacatccttacaacaaaccaatgcgacctagTGAGGCTATGGCAGA
GCTACGGACCAGCCAAATACTTCGAGAGCAACTTCACACGTCCTTGGAGA
CAGCACTAGGCGAACTTGAACGTTTGTACGCGGGCATGCACTCTgtaagt
agacgaggaatcaacaaatacactctcaagaacaacgaaaaatgtcggtg
ggaaggggcggaagtgattagttgagcgcttcccaagagtgagagcaaca
tgattatatagcactcgtggacacatttcgatcctcgccgcaccttccca
catacacagGATTCTGGACTCCTCCAAAGCGACGGACGAGCCATGGGCCT
GGCGCAAGAACAGCAACAGCAGGCCGATACACACCTCCCTTTAGACGACA
ACACTGCATACGACCTCACTTATGCGCAGCGAAGGGCCTCGGTCATCATC
CACATGCTAGAGCTCCTGCACGAACGCTTTGCCGTCACCGTGACATTCCG
TCGTGCTTTCGCCTTACGGATTTTCTTCGCTTTTTGGCGGGAGAGATTTC
CTTCCTTATTTTCGGAGATCGAGGTGGGGGAGGAGGGGGAGGAAATTGAA
TATGGAGCAGAAGGAGTATTAGTAGCAGCAGGAGGAGCAAGGGGGAGAGC
AAGATGTATGATTAATAATTGCGTTAGCCTCGTTGAGGATATTTTGCACC
ATCCCGAGGAGCGTCACCAGGACCAGCAACAGCAGCAGCAACAGCAGTAC
CGTCCACCGCAAACACCGCAGCAGCTGCGGTTTCGTTCCTCCACACTACG
CCCCACCTTGTCCTTACGAGGAGGTGAAAGGGAAAGCCCTGCCCCCTCCT
TCGTCTCCGCCCCCTCCTCCCTCGCAGATAGGGGTCGAGAGCGATTGCTC
CGAAAGGAAGTTGCAGATCTCCAAGCCGAAGTACAATCCCGAGAAGAAGT
CCAAAACGTGTTGCTTGACATTCTCGCTTCGTACGAAAGGAAGAATTTGG
ATTTGAATTTTGCCGATAGTGGGGAGGAAGTATGGTGGGAGGAAGGATCT
GTCAGTGGTGGGAGGAAGGGGGAGGAGGGAGCTGGGGATGATTTTACCAC
CATTTTTAGTGGAGGTAGAAGTAGCAGCCGCGGAGCAGGAGGGAAAGGGA
GAGGAAGAGAAGGAAGAGGAGTGGGAGAGGGGGCAGGGGGTGGAGCTCAT
TTGATATGGAGAGTTGAGAATTTTTGCCGCGTTGTGCAGCAAGCGTTAGA
GGAGCGAAAAGCTTGGACAGAGCATATGGAACGGTCTTTAGTAAATTGCG
TCTGTCAATCTCGTTAGATTTATTCAGCAGAGGTGCAGAAAGAGATGGGA
GAGCGAAGCAAACTTTTTCAGTCGTTGTCATGATGTAAGGCTGGGGCCTA
CATAGCCTTCCAAGACAAAAGCACTCAGGTCACAATGAGAAAGAAGAAAA
ATGACGAGCTCGAGCACATATCAGCGAGTAGAATCCATTTGTGCTTGGTC
GGAC
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protein sequence of NO13G02520.1

>NO13G02520.1-protein ID=NO13G02520.1-protein|Name=NO13G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MESSLSSGGGFPFERSPPYDGTNGDGFTQRAPSQEEGSIEHEGQEQDHQW
TGPPPPPSQPPPPPRPASRQYLQQPILPPSPSASTFIPASGAQQQQWPPS
HTSPAGAEDADVLLLLEEREVLREQLRQQIAEKGELERQHRADKERLAVV
EEALDESTRMYKHAKEAAQQCSNDATEAMAELRTSQILREQLHTSLETAL
GELERLYAGMHSDSGLLQSDGRAMGLAQEQQQQADTHLPLDDNTAYDLTY
AQRRASVIIHMLELLHERFAVTVTFRRAFALRIFFAFWRERFPSLFSEIE
VGEEGEEIEYGAEGVLVAAGGARGRARCMINNCVSLVEDILHHPEERHQD
QQQQQQQQYRPPQTPQQLRFRSSTLRPTLSLRGGERESPAPSFVSAPSSL
ADRGRERLLRKEVADLQAEVQSREEVQNVLLDILASYERKNLDLNFADSG
EEVWWEEGSVSGGRKGEEGAGDDFTTIFSGGRSSSRGAGGKGRGREGRGV
GEGAGGGAHLIWRVENFCRVVQQALEERKAWTEHMERSLVNCVCQSR*
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Synonyms
Publications