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Properties
Property Name | Value |
Description | Leucine-rich repeat, cysteine-containing subtype |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:699045..701767 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
Vocabulary: INTERPRO
Term | Definition |
IPR001611 | Leu-rich_rpt |
IPR006553 | Leu-rich_rpt_Cys-con_subtyp |
Homology
BLAST of NO13G02510 vs. NCBI_GenBank
Match: EWM21918.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana]) HSP 1 Score: 270.0 bits (689), Expect = 1.900e-68 Identity = 219/327 (66.97%), Postives = 246/327 (75.23%), Query Frame = 0
Query: 91 MTLVDICVDAICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTRLDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTPQLKTLDLNQGGQFSASALCACLEGLTEIEFLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQSNSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRKINLAHSGLR--DVGSLS 416
M+L+D+C+D+IC+ IL YE P FD LPP+LVRR+ DSL +HKALTKLTL LR CDVTRLDLS CK V+D WL PF K AGLL+LTELG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PQLKTLD+N QFS++++ C+ + EI LDLGYCP G+G ALEVLTRG A TLQ LILD+SR L+NADL+ LG+ L+ LSLR C +ISDAGLCQLP LE LD SHCRGVR LP Q L LR +N AHSGLR DVGSL+
Sbjct: 1 MSLIDLCIDSICQNILCYEVPPSFDVLPPDLVRRIFDSLTSHKALTKLTLLPLRYCDVTRLDLSPCKGVTDQWLRPFTDKXXXXXXXXXXXXXXXAGLLNLTELGGLQVADLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPQLKTLDVNACRQFSSTSISFCVGKMREIRHLDLGYCPRGVGGGALEVLTRGPAPTTLQVLILDSSRSLSNADLFSLGKFRCLQRLSLRNCTTISDAGLCQLPSSLETLDASHCRGVRRLPAQSLPCLRSVNFAHSGLRDSDVGSLA 327
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02510 ID=NO13G02510|Name=NO13G02510|organism=Nannochloropsis oceanica|type=gene|length=2723bp AGCAGCCGTTGAGATTAGCAGCTAGCTAATGGGCAGTAGCTTGTCCAGGA CAGCCGTCACTGGTGGGTCCGAAGGAGGTGGAGGCGAGGCAGCCCTTATG TCAGGCCATCACTCCTGCGAGAGGCAGGAAGGGCTGGATGTGGAGCTAAG AAAAGATAAGGCGGTACCCATCGACGTATCCTGCGAGAAGTCCGTGCATG GTTTTGTCACGGAGATGTACCGCTTCTCGCAAGGAGGACGTTGTCGCAGg tacgttgagaaaagagggaggaggtatggggggcggggggaggtcatcct gatccgacgtgagatgtgatcactcgcagccaccctcagttgcttctgga cagtaccaaaaacaaatttaataatacacaaaccagggactcgtagatga tcacggaaacagtgccactccaggctcgcagattagctacccttgcacac gtgtcgtctcacacacgttttgctctttccacactccccacacccgaaca aagcagATGCCGCCGACCCAAGCAGCAGCAAGTGGAAGACCACAAACAAG AACTCATGACGCTAGTCGACATCTGCGTCGACGCTATTTGCGAGAAAATT TTGATTTACGAGGCCCCGTTGCCCTTTGACTGCCTGCCACCTGAGCTTGT CCGCCGCCTGTTGGATTCCTTGATGAACCACAAAGCACTCACAAAACTAA CGgtaggcgtgaatatagagtgttattttcccctttctatctctatttaa tttttagatggaatgccaaacgttcttttcgtggtaccccctcttccctt cccaccaaccacctgcagCTCCAATCCCTGCGCGACTGCGACGTTACCCG CCTAGATCTCTCCTCCTGCAAAGACGTCTCCGACGATTGGCTCGAACCAT TCGGTACCAAAAGCTTAACCCATTTGTCCCTTGCCTACTGCCCTGGTGTG ACCGACGCTGGCCTCCTCCACCTCACCGAGCTAGGCGCCCTTCGGCATGC AAATCTGACGGGCTGCACGGGCTTACGCTTCGGGGGCCTAACGCCATTTA AACAGTGTTGGTTAATGACAACGCTGAATTTGAGTGGGTGTCGTCATCTG ATGGATGACGCTCTCAAGCCTCTGGCACATTTGCCCGCCCTGCAGCATCT CCGATTGCGCGGCTGCCGGCAGCTGACAGACGTTGCCTTGACTTTCCTTT CCCCCCTCACGCCCCAACTCAAAACCCTGGATTTGAACCAAGGAGGGCAG TTTTCAGCATCAGCTCTCTGTGCATGTCTGGAGGGATTGACTGAAATTGA GTTTCTGGACCTGGGTTATTGTCCGGAGGGAATAGGGCGGGAGGCGTTGG AGGTGCTCACCCGGGGCCGGGCCTCCGCCACCTTGCAAACCTTGATTCTT GATGCCTCTCGAAAGCTGACCAACGCCGATTTATACTTGCTGGGACAGTC AAATTCTTTGAGAGTCTTGAGTTTGCGAGCATGTCCGAGCATAAGCGATG CAGGGCTCTGTCAGTTACCACAGGGATTGGAAGACTTAGATGTGAGCCAT TGTCGAGGGGTTCGACTGTTGCCCAACCAGATATTGATGAGCTTGAGGAA GATCAATCTTGCACATTCAGGACTGAGGGATGTCGGATCGTTGAGTGAGT TTACGGCACTGGAAGAGGTTAATCTGGACTCATGCGCCATTGgtacggaa ttggggagggagagataggggaaaggaaggaggaaggaaggaaggaaggg ggctcacccactctgcacgttagctaggcttacacctttcctccctccct ccctttctacctcattcatttccgacagGGAACGCCGGCCTGTCTGCCCT CCTGCCCCTTAAGAAGCTCCAACGCCTCAATCTAGCTGACACGGGGATCT CCAACCATGGCATGGACGTCCTCGCCGCCCTCCCCTCCCTCTCCTCCCTC TCGCTGTTCTACACTAACATCACCAATACTGGCGTCCAGCAGCTGAGCTC CTTAAAAAATCTTACCTCTCTTAACCTTGATAGTCGTGAATTGACCGATC AATCACTCTTGCATATATCGACTCTGACGAAGTTGGAGCATTTAGATGTG TTCTCCGCGCGTGTGTCCGACGTCGGCTTATGCTTCCTGACCTCTTTGTC TGGGCTGGTAAGTCTCGAGATATGTGGTGGTAAAATTACGGATTTAGGGT TGAAGTACATTTCGTGCTTGCGTGCCTTGAGAAGATTAAATGTGAGCCAA AATATGCGGGTGACCAACATGGGTTTGTATTATCTCGCGCAAATGAGTGA TTTGGAGGTGCTGAATGTGTCACATTGTCAGGTGTCTGCTCCAGCAGCCC TGGACCCTCTTCTGAAAATGAGGATGTTGAAAGTGCTGGCAGTGAACGGG TGCAGAGGGATGGCTGACGAGGGGGTCTTGCTGGAGTTGCGAAGGTCGTT GCCTGTTTTGAAGACGGTCAGGGCTGTATGTTGAGAGAAGGGAGGGTGGG AGGAGAGGGAAGCAAGGGAAGGGAGGAGACGAGTGGGCGTGAACAAACTT GCACAGCAGAGGTCGAAAAGTTGATAGAAGCTTGTATAGAATACTACCAC ATAAAAGGAGAAGAACGAGAAGAAAAACGAGGAGAAGAAGAAGGAGAGAA AGGGGGAAGCGAACGAGAATAATCATACTATGTTCAACAAGTCAAAAAAA ATTTATGGTGAACGGTAGCATGC back to topprotein sequence of NO13G02510.1 >NO13G02510.1-protein ID=NO13G02510.1-protein|Name=NO13G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp MGSSLSRTAVTGGSEGGGGEAALMSGHHSCERQEGLDVELRKDKAVPIDV SCEKSVHGFVTEMYRFSQGGRCRRCRRPKQQQVEDHKQELMTLVDICVDA ICEKILIYEAPLPFDCLPPELVRRLLDSLMNHKALTKLTLQSLRDCDVTR LDLSSCKDVSDDWLEPFGTKSLTHLSLAYCPGVTDAGLLHLTELGALRHA NLTGCTGLRFGGLTPFKQCWLMTTLNLSGCRHLMDDALKPLAHLPALQHL RLRGCRQLTDVALTFLSPLTPQLKTLDLNQGGQFSASALCACLEGLTEIE FLDLGYCPEGIGREALEVLTRGRASATLQTLILDASRKLTNADLYLLGQS NSLRVLSLRACPSISDAGLCQLPQGLEDLDVSHCRGVRLLPNQILMSLRK INLAHSGLRDVGSLSEFTALEEVNLDSCAIGNAGLSALLPLKKLQRLNLA DTGISNHGMDVLAALPSLSSLSLFYTNITNTGVQQLSSLKNLTSLNLDSR ELTDQSLLHISTLTKLEHLDVFSARVSDVGLCFLTSLSGLVSLEICGGKI TDLGLKYISCLRALRRLNVSQNMRVTNMGLYYLAQMSDLEVLNVSHCQVS APAALDPLLKMRMLKVLAVNGCRGMADEGVLLELRRSLPVLKTVRAVC* back to top
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