NO13G02490, NO13G02490 (gene) Nannochloropsis oceanica

Overview
NameNO13G02490
Unique NameNO13G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length519
Alignment locationchr13:695844..696362 -

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Properties
Property NameValue
Descriptioncofactor assembly, complex C (B6F)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:695844..696362 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003425Uncharacterised_Ycf19
Homology
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_005856331.1 (integral membrane protein, partial [Nannochloropsis gaditana CCMP526] >EKU20034.1 integral membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 209.1 bits (531), Expect = 1.100e-50
Identity = 112/167 (67.07%), Postives = 130/167 (77.84%), Query Frame = 0
Query:    8 HVLVAFLLSLLAASTNAFLIPTQRLSSLPARS--AAAHPCTTKSASTLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173
            H ++  LL+ +     AF+ P      LP  S    A P    ++S+LRM ++PSS+ L E+ G  +LLAASSWV PAK +IEP+LDLGG AFLVRIVLSWYPQV+LNKLPAN+IAWPTEPFL VTR+VVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK
Sbjct:   14 HGIIFTLLAFVGLPAQAFIPP----KGLPRSSFHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 176          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: EWM21906.1 (integral membrane protein [Nannochloropsis gaditana])

HSP 1 Score: 209.1 bits (531), Expect = 1.100e-50
Identity = 112/167 (67.07%), Postives = 130/167 (77.84%), Query Frame = 0
Query:    8 HVLVAFLLSLLAASTNAFLIPTQRLSSLPARS--AAAHPCTTKSASTLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173
            H ++  LL+ +     AF+ P      LP  S    A P    ++S+LRM ++PSS+ L E+ G  +LLAASSWV PAK +IEP+LDLGG AFLVRIVLSWYPQV+LNKLPAN+IAWPTEPFL VTR+VVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK
Sbjct:    8 HGIIFTLLAFVGLPAQAFIPP----KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: CBN79336.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.6 bits (314), Expect = 1.500e-25
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 0
Query:   38 RSAAAHPCTTKSASTLRMVVEPSSVLLMES--GGPAMLLA-ASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173
            RSAA       +AST+  +   ++V+ + +  G P +  A A +WVGP K +++P L    FAF+ RIVLSWYP+++LN  P N++AWPTEP L+ TR ++PPAFGVDISPI+W    + + EIL+  QGIL L+  K
Sbjct:   92 RSAAEPKLQPAAASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_002287677.1 (hypothetical protein THAPSDRAFT_268187 [Thalassiosira pseudonana CCMP1335] >EED95120.1 hypothetical protein THAPSDRAFT_268187 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 112.8 bits (281), Expect = 1.000e-21
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 0
Query:   72 MLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTL 169
            +L     WV P   ++ P L+L  FA L RIVLSWYP  N+N++P NI+ WPTEP L++ R  VPPAFGVDI+P++W     F+ EIL+  QG+LT+
Sbjct:    2 VLSETDPWVQPLALVLGPFLNLFSFAMLCRIVLSWYPTANVNEVPFNIVVWPTEPLLRLVRGSVPPAFGVDITPVVWLGVFTFVNEILLGQQGLLTM 98          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_005831599.1 (hypothetical protein GUITHDRAFT_72077 [Guillardia theta CCMP2712] >EKX44619.1 hypothetical protein GUITHDRAFT_72077 [Guillardia theta CCMP2712])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 0
Query:   75 AASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173
            AA  W+ P ++ ++  L L    F +RI L+WYPQ++LN+ P NI+AWPTEPF ++ R+ VPP FGVDISPI+ +  L+F+REI +  QG+LT++  K
Sbjct:   21 AAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREIFLGQQGVLTMIANK 118          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_086681977.1 (YggT family protein [Nostoc sp. T09] >OUL37608.1 hypothetical protein BV372_01220 [Nostoc sp. T09])

HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 0
Query:   86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172
            I+ P+L L  F F+ RI+L+WYPQVNLN+ P N+IAWPTEPFL + R +VPP  GVDI+PIIW    + LREIL+  QG+LT+L +
Sbjct:   10 ILNPVLGLMIFLFIFRIILTWYPQVNLNQFPLNLIAWPTEPFLVLLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_013189726.1 (YggT family protein [Trichormus azollae] >ADI62706.1 protein of unknown function YGGT ['Nostoc azollae' 0708])

HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 0
Query:   86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLL 170
            I+ P+L +  F F+ RI+L+WYPQVNLN+LP N+IAWPTEPFL + R VV P  GVDI+PIIW    +F+REIL+  QG+LT++
Sbjct:   10 ILSPVLGIMTFLFIFRIILTWYPQVNLNRLPFNLIAWPTEPFLVLLRKVVQPIGGVDITPIIWVGIFSFIREILLGQQGLLTMM 93          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_041037722.1 (MULTISPECIES: YggT family protein [Nostocales] >KIJ76792.1 integral membrane protein [Tolypothrix campylonemoides VB511288] >OKH56830.1 hypothetical protein NIES2130_23150 [Scytonema sp. HK-05] >BAY44139.1 hypothetical protein SAMD00079811_17330 [Scytonema sp. HK-05])

HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   83 AKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172
            A  I+ P+L L  F F+ RI+L+WYPQV+LN+LP N++AWPTEPFL   R +VPP  GVDI+PIIW    + LREIL+  QG+LT+L +
Sbjct:    7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPFNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_069350152.1 (YggT family protein [Scytonema millei] >ODN57572.1 hypothetical protein QH73_001975 [Scytonema millei VB511283])

HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   83 AKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172
            A  I+ P+L L  F F+ RI+L+WYPQV+LN+LP N++AWPTEPFL   R +VPP  GVDI+PIIW    + LREIL+  QG+LT+L +
Sbjct:    7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPYNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95          
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_103137605.1 (YggT family protein [Nostoc sp. CENA543] >AUT01212.1 hypothetical protein CLI64_12815 [Nostoc sp. CENA543])

HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 0
Query:   86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172
            I+ PIL L  F F+ RI+L+WYPQV+LN+LP N+IAWPTEPFL  +R ++PP  GVDI+PIIW   L+ LREIL+  QG++T++ +
Sbjct:   10 ILGPILGLMTFLFIFRIILTWYPQVDLNRLPFNLIAWPTEPFLIPSRKIIPPIGGVDITPIIWVGILSLLREILLGQQGLITMMSR 95          
The following BLAST results are available for this feature:
BLAST of NO13G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856331.11.100e-5067.07integral membrane protein, partial [Nannochloropsi... [more]
EWM21906.11.100e-5067.07integral membrane protein [Nannochloropsis gaditan... [more]
CBN79336.11.500e-2546.38conserved unknown protein [Ectocarpus siliculosus][more]
XP_002287677.11.000e-2150.52hypothetical protein THAPSDRAFT_268187 [Thalassios... [more]
XP_005831599.13.000e-2148.98hypothetical protein GUITHDRAFT_72077 [Guillardia ... [more]
WP_086681977.13.000e-2158.14YggT family protein [Nostoc sp. T09] >OUL37608.1 h... [more]
WP_013189726.13.900e-2158.33YggT family protein [Trichormus azollae] >ADI62706... [more]
WP_041037722.13.900e-2156.18MULTISPECIES: YggT family protein [Nostocales] >KI... [more]
WP_069350152.13.900e-2156.18YggT family protein [Scytonema millei] >ODN57572.1... [more]
WP_103137605.13.900e-2156.98YggT family protein [Nostoc sp. CENA543] >AUT01212... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001646NSK001646Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02490.1NO13G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596243gene_6762Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g20gene8525Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02490.1NO13G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02490 ID=NO13G02490|Name=NO13G02490|organism=Nannochloropsis oceanica|type=gene|length=519bp
ATGCGTCCACAACCCTACTCCCACGTCCTCGTGGCCTTTCTCCTGTCCCT
CCTTGCTGCCTCCACCAATGCCTTCCTGATCCCCACACAGCGCCTCTCCT
CCCTCCCCGCCAGATCAGCAGCAGCACATCCCTGCACCACTAAGTCCGCG
TCGACACTGAGGATGGTGGTAGAGCCTTCAAGTGTGCTGCTCATGGAGAG
TGGCGGGCCGGCAATGCTGTTAGCGGCGAGTTCATGGGTGGGCCCGGCCA
AGACAATAATTGAGCCCATTCTGGACTTGGGCGGGTTTGCCTTCTTGGTG
CGCATCGTGTTGTCGTGGTACCCCCAGGTAAATCTGAACAAGCTGCCCGC
CAACATCATCGCCTGGCCCACTGAGCCCTTCCTGCAGGTGACACGCGTGG
TCGTGCCCCCGGCTTTCGGAGTCGACATTAGTCCCATTATCTGGTTTGCC
TTCCTCAACTTTTTGCGGGAGATTTTGGTCAGTGACCAAGGCATTCTGAC
GCTGCTGCAACAGAAGTAA
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protein sequence of NO13G02490.1

>NO13G02490.1-protein ID=NO13G02490.1-protein|Name=NO13G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MRPQPYSHVLVAFLLSLLAASTNAFLIPTQRLSSLPARSAAAHPCTTKSA
STLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLV
RIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFA
FLNFLREILVSDQGILTLLQQK*
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Synonyms
Publications