NO13G02490, NO13G02490 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_005856331.1 (integral membrane protein, partial [Nannochloropsis gaditana CCMP526] >EKU20034.1 integral membrane protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 209.1 bits (531), Expect = 1.100e-50 Identity = 112/167 (67.07%), Postives = 130/167 (77.84%), Query Frame = 0 Query: 8 HVLVAFLLSLLAASTNAFLIPTQRLSSLPARS--AAAHPCTTKSASTLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173 H ++ LL+ + AF+ P LP S A P ++S+LRM ++PSS+ L E+ G +LLAASSWV PAK +IEP+LDLGG AFLVRIVLSWYPQV+LNKLPAN+IAWPTEPFL VTR+VVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK Sbjct: 14 HGIIFTLLAFVGLPAQAFIPP----KGLPRSSFHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 176
BLAST of NO13G02490 vs. NCBI_GenBank
Match: EWM21906.1 (integral membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 209.1 bits (531), Expect = 1.100e-50 Identity = 112/167 (67.07%), Postives = 130/167 (77.84%), Query Frame = 0 Query: 8 HVLVAFLLSLLAASTNAFLIPTQRLSSLPARS--AAAHPCTTKSASTLRMVVEPSSVLLMESGGPAMLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173 H ++ LL+ + AF+ P LP S A P ++S+LRM ++PSS+ L E+ G +LLAASSWV PAK +IEP+LDLGG AFLVRIVLSWYPQV+LNKLPAN+IAWPTEPFL VTR+VVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK Sbjct: 8 HGIIFTLLAFVGLPAQAFIPP----KGLPRSSYHQLAPPAPRIASSSLRMTIDPSSIPLAENTGTVLLLAASSWVSPAKAVIEPLLDLGGVAFLVRIVLSWYPQVDLNKLPANLIAWPTEPFLSVTRLVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 170
BLAST of NO13G02490 vs. NCBI_GenBank
Match: CBN79336.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 125.6 bits (314), Expect = 1.500e-25 Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 38 RSAAAHPCTTKSASTLRMVVEPSSVLLMES--GGPAMLLA-ASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173 RSAA +AST+ + ++V+ + + G P + A A +WVGP K +++P L FAF+ RIVLSWYP+++LN P N++AWPTEP L+ TR ++PPAFGVDISPI+W + + EIL+ QGIL L+ K Sbjct: 92 RSAAEPKLQPAAASTVSGLATGAAVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLYFEFAFVARIVLSWYPKLDLNSAPQNLVAWPTEPILKPTRAIIPPAFGVDISPIVWVMICSLVHEILLGQQGILNLMSNK 229
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_002287677.1 (hypothetical protein THAPSDRAFT_268187 [Thalassiosira pseudonana CCMP1335] >EED95120.1 hypothetical protein THAPSDRAFT_268187 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 112.8 bits (281), Expect = 1.000e-21 Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 0 Query: 72 MLLAASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTL 169 +L WV P ++ P L+L FA L RIVLSWYP N+N++P NI+ WPTEP L++ R VPPAFGVDI+P++W F+ EIL+ QG+LT+ Sbjct: 2 VLSETDPWVQPLALVLGPFLNLFSFAMLCRIVLSWYPTANVNEVPFNIVVWPTEPLLRLVRGSVPPAFGVDITPVVWLGVFTFVNEILLGQQGLLTM 98
BLAST of NO13G02490 vs. NCBI_GenBank
Match: XP_005831599.1 (hypothetical protein GUITHDRAFT_72077 [Guillardia theta CCMP2712] >EKX44619.1 hypothetical protein GUITHDRAFT_72077 [Guillardia theta CCMP2712]) HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21 Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 0 Query: 75 AASSWVGPAKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQK 173 AA W+ P ++ ++ L L F +RI L+WYPQ++LN+ P NI+AWPTEPF ++ R+ VPP FGVDISPI+ + L+F+REI + QG+LT++ K Sbjct: 21 AAPEWLEPTRSSLDIGLALFSLLFFLRIPLTWYPQMDLNQFPQNIVAWPTEPFCKLVRLAVPPLFGVDISPIVLYGVLSFIREIFLGQQGVLTMIANK 118
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_086681977.1 (YggT family protein [Nostoc sp. T09] >OUL37608.1 hypothetical protein BV372_01220 [Nostoc sp. T09]) HSP 1 Score: 111.3 bits (277), Expect = 3.000e-21 Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 0 Query: 86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172 I+ P+L L F F+ RI+L+WYPQVNLN+ P N+IAWPTEPFL + R +VPP GVDI+PIIW + LREIL+ QG+LT+L + Sbjct: 10 ILNPVLGLMIFLFIFRIILTWYPQVNLNQFPLNLIAWPTEPFLVLLRKLVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_013189726.1 (YggT family protein [Trichormus azollae] >ADI62706.1 protein of unknown function YGGT ['Nostoc azollae' 0708]) HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21 Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 0 Query: 86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLL 170 I+ P+L + F F+ RI+L+WYPQVNLN+LP N+IAWPTEPFL + R VV P GVDI+PIIW +F+REIL+ QG+LT++ Sbjct: 10 ILSPVLGIMTFLFIFRIILTWYPQVNLNRLPFNLIAWPTEPFLVLLRKVVQPIGGVDITPIIWVGIFSFIREILLGQQGLLTMM 93
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_041037722.1 (MULTISPECIES: YggT family protein [Nostocales] >KIJ76792.1 integral membrane protein [Tolypothrix campylonemoides VB511288] >OKH56830.1 hypothetical protein NIES2130_23150 [Scytonema sp. HK-05] >BAY44139.1 hypothetical protein SAMD00079811_17330 [Scytonema sp. HK-05]) HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21 Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0 Query: 83 AKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172 A I+ P+L L F F+ RI+L+WYPQV+LN+LP N++AWPTEPFL R +VPP GVDI+PIIW + LREIL+ QG+LT+L + Sbjct: 7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPFNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_069350152.1 (YggT family protein [Scytonema millei] >ODN57572.1 hypothetical protein QH73_001975 [Scytonema millei VB511283]) HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21 Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 0 Query: 83 AKTIIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172 A I+ P+L L F F+ RI+L+WYPQV+LN+LP N++AWPTEPFL R +VPP GVDI+PIIW + LREIL+ QG+LT+L + Sbjct: 7 AAWILGPVLGLMTFLFIFRIILTWYPQVDLNRLPYNLVAWPTEPFLVPLRKIVPPIGGVDITPIIWVGIFSLLREILLGQQGLLTMLSR 95
BLAST of NO13G02490 vs. NCBI_GenBank
Match: WP_103137605.1 (YggT family protein [Nostoc sp. CENA543] >AUT01212.1 hypothetical protein CLI64_12815 [Nostoc sp. CENA543]) HSP 1 Score: 110.9 bits (276), Expect = 3.900e-21 Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 0 Query: 86 IIEPILDLGGFAFLVRIVLSWYPQVNLNKLPANIIAWPTEPFLQVTRVVVPPAFGVDISPIIWFAFLNFLREILVSDQGILTLLQQ 172 I+ PIL L F F+ RI+L+WYPQV+LN+LP N+IAWPTEPFL +R ++PP GVDI+PIIW L+ LREIL+ QG++T++ + Sbjct: 10 ILGPILGLMTFLFIFRIILTWYPQVDLNRLPFNLIAWPTEPFLIPSRKIIPPIGGVDITPIIWVGILSLLREILLGQQGLITMMSR 95 The following BLAST results are available for this feature:
BLAST of NO13G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02490 ID=NO13G02490|Name=NO13G02490|organism=Nannochloropsis oceanica|type=gene|length=519bpback to top protein sequence of NO13G02490.1 >NO13G02490.1-protein ID=NO13G02490.1-protein|Name=NO13G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=173bpback to top Synonyms
Publications
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