NO13G02430, NO13G02430 (gene) Nannochloropsis oceanica

Overview
NameNO13G02430
Unique NameNO13G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2678
Alignment locationchr13:670920..673597 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:670920..673597 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
IPR001841Znf_RING
Homology
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BLAST of NO13G02430 vs. NCBI_GenBank
Match: EWM21926.1 (putative zinc ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 1.700e-119
Identity = 292/649 (44.99%), Postives = 349/649 (53.78%), Query Frame = 0 
Query:   61 LNLIPEECLEGNQNLPSCIELVNLPVAIGRACARKFGAVSYAKKVNVMGMGISRQHCSFLRF-GNALQIVDESSQGVAVNGIRIRPLLPRTLAAGDKIVLGLPQAHMVEVGA-SYPVPGSSTKGGAVFRVELYQAAPAPISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARETRGASPSVGSVGSRSASSQIEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVRPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEREYKRRWLKALECTVCMEPLCTAAHISCGHIACFTCIHRRFAHQSFEDGSAYGFQERKRLCPTCRKDIFFMSRDVKMDELVEESMSNDADMMAPCERMVWEERKRDGLALARYYEAKLCNNPQQFIHRKKDVMIKAVIRAIQPFVGEGGGRGGDEVGGRGRGAVCHVCRQRVEGGKEGGYEATWSLPAAQGFKPIPSSATVHLECLRDSACKAIRKGLSPEGMVSLSVRLDVQSLFVEEEGGLEGFRKRKIYQVLSEERQDYPWWVDGKIKLQI 708
            L L+ EECL+ NQ+LP  ++L  LPVA+GRAC +  G ++YAK+V++MG+GISRQHCS ++   N+LQIVDESSQGVAVNG+RI P  PRTL  GD +VLGLP AH   VGA S    GS +KGGAVFRV+   A  A  S                                                 RE+   +    S  S SA+S   +T                                                                            E+                        XXXXXXXXXXXXXXXXXXXXXXX                                 EE+EYKRRWLKALEC VCMEPLC AAH+SCGHIACFTCIHRRFA QS EDGSAYGFQ+RKRLCP CRK +FFMSRDVKMDELV+ESMSN AD M   ER VWE RKRDGLAL+++YE K+ NNPQ  +HR++++ +K  I+     V   G R GD         +C  CRQ + GG  G Y A W L   QGF+P+P  A+VHLECL+ S CKAIR GLSP+G++SL  RLDV  L  +EE G+EGFRK K++Q LSEERQ+YPWWVDG ++LQI
Sbjct:   30 LTLLAEECLKSNQSLPPSVDLSELPVAMGRACGQAQGTLNYAKRVSLMGIGISRQHCSLVQGPDNSLQIVDESSQGVAVNGVRIPPQTPRTLKVGDVVVLGLPMAHDHPVGALSSSGSGSMSKGGAVFRVDCLPADRARDS----------------------------------------------PAVRESDALNAEETSPSSISATSTWTDTPAVCTMSSADAASAHQGGACNKPGRQGDGAASLDVANESEHLERGERSQVEAESTAKEAGGEHEGVAQESDRNSDVEI------------VEVRSAATVPPRXXXXXXXXXXXXXXXXXXXXXXXETIIGALDAGAGRGWQESQMTRSAGVCRAAACAEEKEYKRRWLKALECPVCMEPLCAAAHMSCGHIACFTCIHRRFALQSVEDGSAYGFQDRKRLCPVCRKAVFFMSRDVKMDELVDESMSNHADRMTTAERAVWERRKRDGLALSQFYERKIHNNPQNLVHRRREIGVKVSIKT----VTASGSRRGD------MSTLCSECRQAI-GGPSGRYIAVWKLTPTQGFRPVPCVASVHLECLKSSTCKAIRAGLSPDGILSLLYRLDVLGLLADEENGIEGFRK-KVFQALSEERQEYPWWVDGAVRLQI 608
The following BLAST results are available for this feature:
BLAST of NO13G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21926.11.700e-11944.99putative zinc ring finger protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001652NSK001652Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02430.1NO13G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631754gene_6768Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g25gene8530Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02430.1NO13G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02430 ID=NO13G02430|Name=NO13G02430|organism=Nannochloropsis oceanica|type=gene|length=2678bp
CAGGCTTTGCACCTAACATTCCAACTTTTTGAGCTGCTTTACATATCGGG
CGTGCGACGGAAAGCAAGAGCACACACGGAAGCAGGCTCGCCCATGCCTT
ACCACTACAATCTGCACCAGCACCAGCACCCGCACCAGATAGAGCGTGTT
GACATGGTGAGTACTGCTGCTGCTCCTCCTGCTGCTGCTCGTGCTCCTGC
TGCTGCTCCGGCTGCTGCTGCTCCTGCCGCTGCCCTTTCTTGTCCGGGTG
CCTCCATCGCCCCTACCTACCGACTAAATCTGATTCCCGAAGAATGCTTG
GAGGGCAACCAGAACTTGCCTTCGTGCATCGAGCTGGTCAACCTACCCGT
GGCAATAGGGCGGGCCTGCGCGCGGAAGTTTGGAGCCGTCTCGTATGCCA
AGAAGGTTAACGTGATGGGAATGGGCATCAGCAGACAGCATTGCTCCTTC
TTGCGGTTTGGCAACGCGCTGCAAATCGTCGATGAGTCCAGTCAAGGTGT
AGCAGTAAATGGCATTCGAATTCGACCTCTACTCCCCAGGACCTTGGCAG
CAGGAGATAAAATTGTGTTGGGACTGCCTCAGGCACACATGGTGGAAGTC
GGCGCCTCTTACCCTGTCCCGGGGAGTAGCACCAAGGGAGGGGCTGTCTT
TCGCGTGGAGCTTTATCAGGCTGCTCCTGCGCCTATCAGTAGCAGTGGCT
GCAGTAGTAGCAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCGAT
GAGGCGTCTATGCCTTCTTTTTCTTCTCCATCTGTACCAGTTGCCTCCGA
TGCAGCCGCAGCTGATGCTTCTTCGATGGTGAGAGCGAGAGAGACAAGAG
GAGCTTCACCGTCAGTAGGCAGTGTTGGCAGCAGGAGTGCGAGCAGTCAA
ATAGAAGAGACTGCGGCAGTGGGTGTGGCGATCGAAAGCCACAGCCACGA
GGAAGACGAGGAGATGGATCAGAAGGAGAAGGAGGTCGATGAGAAGAAGG
AAGAGGAGAAGAAGTGGGAGCAGGGGCAGGAGCAGGAGCAGGAGCAGGAG
CTGGAGCAGGAGCAGGGACAGCAGCAGGAGCAGGAGCAGGGCCAGGAGAA
CAGTCACCAGACCGATAGCAGCAGTGACGTAGAGATTGTGGAGGTGCGGC
CTGCAGTGGCGAGGCGGAAGCGTAAGAGTAGCCAAAGAGAGATTGTCTCC
CTTCTGGATGACGATAGCAGTGGAGATGACGACCACGTCCAGTTGACGGG
TGAGTGTGGTGGAGGTGGAGGAGGAGGGGGAGGGGGGGAAGGTCCACGCA
AACGCCGCCAGAACGCGGTGATGGCCATGGTGGGTGCAGGAGCAGTAGCT
GCAGCCAAGGAGAAGGACGCAGAGGGAGGGCGAAAAGAGGAGAGGGAGTA
TAAACGACGATGGCTCAAGGCGTTGGAATGCACGGTGTGTATGGAGCCGC
TTTGTACGGCTGCCCATATCTCATGTGGGCATATCGCGTGCTTTACCTGC
ATTCATCGGCGGTTTGCGCATCAGAGTTTCGAGGATGGGAGTGCTTATGG
CTTTCAGGAACGCAAACGCCTGTGTCCGACTTGCCGCAAGGACATTTTCT
TCATGAGCCGGGATGTGAAAATGGATGAGTTGGTCGAAGAGTCCATGAGT
AATGACGCGGATATGATGGCACCATGCGAGCGGATGGTGTGGGAGGAACG
GAAGCGAGATGGACTGGCCCTAGCGAGGTACTACGAAGCGAAGCTTTGCA
ACAACCCCCAGCAATTTATCCACAGAAAAAAGGATGTGATGATCAAGGCT
GTGATAAGGGCGATACAGCCCTTTGTTGGAGAGGGGGGAGGAAGAGGAGG
GGATGAGGTCGGAGGTCGGGGGAGGGGCGCGGTTTGTCACGTATGTCGGC
AGAGAGTAGAGGGAGGGAAGGAGGGAGGGTATGAAGCGACTTGGAGCTTG
CCAGCGGCGCAGGGATTCAAGCCGATCCCGTCGTCGGCGACTGTGCATTT
GGAGTGTTTGCGGGATTCGGCTTGCAAGGCAATTAGGAAGGGCTTGTCAC
CTGAGGGGATGGTTTCGTTATCCGTTCGTCTAGATGTCCAAAGTCTGTTC
GTGGAAGAGGAGGGAGGGCTGGAGGGCTTCAGGAAGAGAAAGATTTATCA
GGTGCTGAGTGAGGAGCGACAGGACTACCCCTGGTGGGTGGATGGGAAGA
TCAAACTTCAAATTCTAACCAACAGAAGGATACAGCTCGTACCACTCCCG
GTAGCCTTTGCTGTTGCTCGAGGGTCGGGGAGCACCATTGGGATAGCATC
TGGGGCCTCTGCGGCCTCTTCCGTCGTACACAATTCCTCAGGCACAGCTG
ATGCGGCGGTGGCTGCGGCGCCGCAACGTAGGACACCTCGGCAGCCCCAA
CAACAACCGCACCAGGAGCAACAGCAAGAGCAGCAGCAGCCACCTCGAAG
GCTTGTGTTGGATGTGGACGACTGAGGAAGGACGGGAGAAGGAGGAAGGG
AAGAAGGGAGACAGAAAGTGGAAAATACAGATATGAATGTATAAATAAGA
TAAATACATAAAGAACCAACGAGAAGAATATGTACAAGAGGGCAAAGAGA
CACGCAAATCGATAACTCACAAAAACACAAGACAAAAGCAAGACGCTAAA
TAAAACGAAAAGAAAGTGAATGTGTCTT
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protein sequence of NO13G02430.1

>NO13G02430.1-protein ID=NO13G02430.1-protein|Name=NO13G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=794bp
MPYHYNLHQHQHPHQIERVDMVSTAAAPPAAARAPAAAPAAAAPAAALSC
PGASIAPTYRLNLIPEECLEGNQNLPSCIELVNLPVAIGRACARKFGAVS
YAKKVNVMGMGISRQHCSFLRFGNALQIVDESSQGVAVNGIRIRPLLPRT
LAAGDKIVLGLPQAHMVEVGASYPVPGSSTKGGAVFRVELYQAAPAPISS
SGCSSSSSSSSSSSSSSSDEASMPSFSSPSVPVASDAAAADASSMVRARE
TRGASPSVGSVGSRSASSQIEETAAVGVAIESHSHEEDEEMDQKEKEVDE
KKEEEKKWEQGQEQEQEQELEQEQGQQQEQEQGQENSHQTDSSSDVEIVE
VRPAVARRKRKSSQREIVSLLDDDSSGDDDHVQLTGECGGGGGGGGGGEG
PRKRRQNAVMAMVGAGAVAAAKEKDAEGGRKEEREYKRRWLKALECTVCM
EPLCTAAHISCGHIACFTCIHRRFAHQSFEDGSAYGFQERKRLCPTCRKD
IFFMSRDVKMDELVEESMSNDADMMAPCERMVWEERKRDGLALARYYEAK
LCNNPQQFIHRKKDVMIKAVIRAIQPFVGEGGGRGGDEVGGRGRGAVCHV
CRQRVEGGKEGGYEATWSLPAAQGFKPIPSSATVHLECLRDSACKAIRKG
LSPEGMVSLSVRLDVQSLFVEEEGGLEGFRKRKIYQVLSEERQDYPWWVD
GKIKLQILTNRRIQLVPLPVAFAVARGSGSTIGIASGASAASSVVHNSSG
TADAAVAAAPQRRTPRQPQQQPHQEQQQEQQQPPRRLVLDVDD*
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Synonyms
Publications