NO13G02300, NO13G02300 (gene) Nannochloropsis oceanica

Overview
NameNO13G02300
Unique NameNO13G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length795
Alignment locationchr13:638862..639656 +

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Properties
Property NameValue
DescriptionNudix hydrolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:638862..639656 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
IPR020476Nudix_hydrolase
Homology
BLAST of NO13G02300 vs. NCBI_GenBank
Match: XP_005854628.1 (nudix hydrolase [Nannochloropsis gaditana CCMP526] >XP_005856326.1 nudix hydrolase [Nannochloropsis gaditana CCMP526] >EKU20029.1 nudix hydrolase [Nannochloropsis gaditana CCMP526] >EKU21732.1 nudix hydrolase [Nannochloropsis gaditana CCMP526] >EWM21893.1 nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 3.000e-75
Identity = 142/221 (64.25%), Postives = 175/221 (79.19%), Query Frame = 0
Query:   23 SRGLKSAACLCLAASYSFSPVWLHLPATS---SSALRMSTGGSFCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPRLIVCESGGKTVVKERGSAKVLCVLPDAKSVELVRSATPFS 241
            SR L SAACLC  A  SF    +  P++S   S+A+ M+  G FCY+YPRPSVTVDTL+FC +   +K+LL++RGN+PFKG WALPGGFVD+DEGLD AAAREL+EET LD+ISFAQVG++G PGRDPRGHT+TVAY AFLLSS+G +AGDDA  A FF FG LPPLAFDH+ II+E W RL+VC+  G TVVKERG+ +VLC LP A + ++VRS+ PF+
Sbjct:    9 SRTLISAACLCFTAPSSF----VLRPSSSRPASTAVGMAAQG-FCYKYPRPSVTVDTLVFCLDETQMKILLVQRGNEPFKGAWALPGGFVDQDEGLDSAAARELREETALDSISFAQVGTYGQPGRDPRGHTITVAYTAFLLSSEGARAGDDAREAKFFAFGSLPPLAFDHKKIIEETWMRLVVCDKEGTTVVKERGAQQVLCRLPTASAAQVVRSSKPFT 224          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: CBN75488.1 (ADP-ribose pyrophosphatase [Ectocarpus siliculosus])

HSP 1 Score: 179.1 bits (453), Expect = 1.600e-41
Identity = 95/192 (49.48%), Postives = 124/192 (64.58%), Query Frame = 0
Query:   41 SPVWLHLPATSS-SALRMSTGGS------FCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSK--GTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWP--RLIVCESGGKTVVKERGSAKVL 222
            +P    LPA +S SA     GG       F Y++PRP+VTVD LI+  +     +LLIKR NDPFKG WALPGGFVD++EGLD AA REL+EETG+ N +  Q G++GDPGRDPRGHT+TVA+ A+  S      +AGDDA+ A FFP  +LP +AFDH  +I ++W   R      GG   V+++ S + L
Sbjct:   69 TPTASTLPAMASLSASAAGRGGDTAPDLPFRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNDPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGDPGRDPRGHTITVAFMAWAPSKAACSARAGDDAAEARFFPVERLPSMAFDHLKVITDSWARCRFGATNDGGGVSVEDKASGQAL 260          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: GAX84232.1 (hypothetical protein CEUSTIGMA_g11655.t1 [Chlamydomonas eustigma])

HSP 1 Score: 167.5 bits (423), Expect = 4.900e-38
Identity = 94/177 (53.11%), Postives = 118/177 (66.67%), Query Frame = 0
Query:   55 LRMSTGGSFCYRYPRPSVTVDTLIFCAENNDV--KLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLD--NISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSK-GTKAGDDASAAAFFPFGQLP-PLAFDHRTIIQEAWPRLI-----VCESGGKTVVKERGSAKV 221
            L +S   S  YRYPRPS+TVDT+I       +  +LLLIKR NDPFK  WALPGGFVD++EGLD AAAREL+EET +D   +   QVGSFGDPGRDPRG TVTVAYAA +  +  G KA DDA+ A ++    LP PLAFDH+ I+ EA+  +        + GG  ++ +  SAK+
Sbjct:   24 LHISRAMSHTYRYPRPSITVDTIIISEPQPSIPPQLLLIKRKNDPFKDCWALPGGFVDENEGLDAAAARELQEETSVDPSTVDLIQVGSFGDPGRDPRGWTVTVAYAAIVPDTNLGVKAADDAADAQWYDLKNLPLPLAFDHQMILCEAFKTMAQRFKEAEDKGGLKLMLKDASAKL 200          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: PNH10108.1 (ADP-ribose pyrophosphatase [Tetrabaena socialis])

HSP 1 Score: 163.7 bits (413), Expect = 7.100e-37
Identity = 83/139 (59.71%), Postives = 102/139 (73.38%), Query Frame = 0
Query:   65 YRYPRPSVTVDTLIFCAENNDV---KLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLD--NISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSK-GTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEA 198
            Y+YPRP+VTVDT+I  A   +V   ++LLIKR N PFK  WALPGGFVD+ EGLD AA RELKEET +D  +++  QVG+FGDPGRDPRG TVTVAYAA + S+  G KA DDA  A +F    LP LAFDH+ +++ A
Sbjct:   34 YKYPRPAVTVDTVIVAARPGNVAPAQMLLIKRKNPPFKDCWALPGGFVDEGEGLDAAAGRELKEETSVDPSSVALTQVGAFGDPGRDPRGWTVTVAYAALVPSTNMGVKAADDAKEARWFDVANLPQLAFDHKLVVRSA 172          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: XP_002950432.1 (hypothetical protein VOLCADRAFT_74606 [Volvox carteri f. nagariensis] >EFJ48633.1 hypothetical protein VOLCADRAFT_74606 [Volvox carteri f. nagariensis])

HSP 1 Score: 162.2 bits (409), Expect = 2.100e-36
Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 0
Query:   61 GSFCYRYPRPSVTVDTLIFCAENNDV--KLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLD--NISFAQVGSFGDPGRDPRGHTVTVAYAAFL-LSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEA 198
            GSF Y+YPRP+VTVDT+I     + +  +LLLIKR N P+K +WALPGGFVD+ EGLD AA REL+EET +D   ++  QVG+FGDPGRDPRG TVTVAYAA +  ++ G KA DDA  A +F    LP LAFDH+ +++ A
Sbjct:   28 GSFTYQYPRPAVTVDTIIVSRPRDGIPPQLLLIKRKNPPYKDSWALPGGFVDEGEGLDAAAGRELQEETSVDPATVTLTQVGAFGDPGRDPRGWTVTVAYAALVPTTNLGVKAADDAKDARWFDVTMLPLLAFDHKLVVRTA 169          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: WP_088655053.1 (NUDIX hydrolase [Geofilum rhodophaeum])

HSP 1 Score: 162.2 bits (409), Expect = 2.100e-36
Identity = 81/139 (58.27%), Postives = 93/139 (66.91%), Query Frame = 0
Query:   63 FCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPRL 202
            + Y YPRPSVT D ++      D  +LLI+R  DP+KG WALPGGFVD+DE L+ AA REL EETGL+  S  QVG+FG PGRDPRGHTVTVAYA    S    +AGDDA  A +F    LP LAFDH  II  A  RL
Sbjct:    2 YSYAYPRPSVTADVVLLAGSGEDFFILLIQRAADPYKGCWALPGGFVDQDEDLEAAARRELLEETGLEVDSLVQVGAFGKPGRDPRGHTVTVAYATVWPSVVEARAGDDAREAQWFSLRALPELAFDHDAIIAAALERL 140          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: WP_079557272.1 (NUDIX hydrolase [Alkalitalea saponilacus] >SKB92021.1 8-oxo-dGTP diphosphatase [Alkalitalea saponilacus] >ASB50152.1 NUDIX hydrolase [Alkalitalea saponilacus])

HSP 1 Score: 160.2 bits (404), Expect = 7.900e-36
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 0
Query:   65 YRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEA 198
            Y YPRPSVT D ++F    +  KLLLIKR  +PFKG WALPGGFVD++E L D A REL+EETGL  +   Q+G++G P RDPRGHT+TVAY A         AGDDA  AA+F   +LP LAFDH  IIQ+A
Sbjct:    4 YNYPRPSVTCDIVVFSVGIDQSKLLLIKRKFEPFKGLWALPGGFVDENEDLTDTALRELEEETGLSGVKVKQIGAYGKPNRDPRGHTITVAYLALTDVELELNAGDDAHDAAWFKIDELPELAFDHADIIQDA 136          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: PSC69087.1 (nudix hydrolase [Micractinium conductrix])

HSP 1 Score: 159.8 bits (403), Expect = 1.000e-35
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 0
Query:   59 TGGSFCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLD--NISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSK-GTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEA 198
            +G   CY YPRP++TVD +I  A+    +LLLI+R ++PF G+WALPGGFVD  EGL+ AAAREL+EET +D   +   QVG+FG+PGRDPRG T+TVA+AA + S++ G KA DDA AA +FP  +LP LAFDH+ +++ A
Sbjct:    2 SGQQHCYPYPRPALTVDAII-VAQTAPPQLLLIQRKHNPFAGSWALPGGFVDSGEGLEAAAARELQEETSVDPSTVLLTQVGAFGEPGRDPRGWTITVAFAALVPSTQLGVKAADDAQAAEWFPADRLPALAFDHKLVVRTA 142          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: PRW32938.1 (NUDIX hydrolase [Chlorella sorokiniana])

HSP 1 Score: 157.9 bits (398), Expect = 3.900e-35
Identity = 83/164 (50.61%), Postives = 113/164 (68.90%), Query Frame = 0
Query:   61 GSFCYRYPRPSVTVDTLIFCA--ENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLD--NISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSK-GTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPRLIVCESGGKTVVKERGSAK 220
            G   Y++PRPS+TVD +I  A    +  KLLLI+R +DPF G WALPGGFVD++E LD AAAREL+EETG++  ++   QVG+FGDPGRDPRG  V+VAYAA + +++ G +A DDA AA ++   QLP LAFDH+ I++ A   L      G+  V++R   +
Sbjct:    4 GGHTYKWPRPSLTVDAVIVAAPESGSSAKLLLIQRKHDPFAGAWALPGGFVDENEPLDQAAARELQEETGVNPVDVLLTQVGAFGDPGRDPRGWCVSVAYAALVPTTELGVQAADDAEAAHWYDMQQLPKLAFDHKLIVRTALRHL-----AGQEAVQQRAGLR 162          
BLAST of NO13G02300 vs. NCBI_GenBank
Match: WP_044118012.1 (NUDIX hydrolase [Alkaliflexus imshenetskii])

HSP 1 Score: 155.6 bits (392), Expect = 1.900e-34
Identity = 69/133 (51.88%), Postives = 89/133 (66.92%), Query Frame = 0
Query:   65 YRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKGTWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGHTVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEA 198
            Y YPRPSVT D ++         +LLI+R ++P K  WALPGGFVD++E L D A REL EETG++ +   Q+G+FG PGRDPRGHT+T+A+   +       AGDDA  A +FP  +LPPLAFDH  II+ A
Sbjct:    5 YEYPRPSVTADVVLLAGSEGSQSILLIQRAHEPHKDMWALPGGFVDENEDLPDTAVRELFEETGIERVGLKQIGAFGKPGRDPRGHTITIAFLGIIPDRVLAVAGDDAKHAEWFPINELPPLAFDHHEIIEVA 137          
The following BLAST results are available for this feature:
BLAST of NO13G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854628.13.000e-7564.25nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
CBN75488.11.600e-4149.48ADP-ribose pyrophosphatase [Ectocarpus siliculosus... [more]
GAX84232.14.900e-3853.11hypothetical protein CEUSTIGMA_g11655.t1 [Chlamydo... [more]
PNH10108.17.100e-3759.71ADP-ribose pyrophosphatase [Tetrabaena socialis][more]
XP_002950432.12.100e-3657.75hypothetical protein VOLCADRAFT_74606 [Volvox cart... [more]
WP_088655053.12.100e-3658.27NUDIX hydrolase [Geofilum rhodophaeum][more]
WP_079557272.17.900e-3657.89NUDIX hydrolase [Alkalitalea saponilacus] >SKB9202... [more]
PSC69087.11.000e-3555.63nudix hydrolase [Micractinium conductrix][more]
PRW32938.13.900e-3550.61NUDIX hydrolase [Chlorella sorokiniana][more]
WP_044118012.11.900e-3451.88NUDIX hydrolase [Alkaliflexus imshenetskii][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001667NSK001667Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02300.1NO13G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596302gene_6782Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100231g5gene8542Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02300.1NO13G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02300 ID=NO13G02300|Name=NO13G02300|organism=Nannochloropsis oceanica|type=gene|length=795bp
ATGAGTCATGGAGGgtaaggtcttggtatgtcttaaacgggcgataactg
caggacttcatctcacgcaacccacacacaacacagCCAGGCATTTCCCT
GCTGCTGCATGCTTCTGTCAGTGTCCTACACATTCTTCAGCCGCGGCCTC
AAATCTGCTGCCTGCTTGTGCCTCGCTGCGTCGTACTCTTTCTCTCCTGT
TTGGCTCCACCTTCCTGCTACTTCCTCGTCGGCCTTGAGAATGAGCACCG
GTGGCAGCTTTTGTTACAGGTACCCTCGACCATCCGTCACTGTAGACACT
CTAATTTTTTGTGCGGAGAATAATGATGTCAAGCTCTTGCTTATCAAGCG
TGGTAATGACCCATTCAAAGGTACATGGGCATTGCCGGGTGGTTTCGTTG
ACAAGGACGAGGGCTTGGACGACGCAGCGGCCCGTGAGCTCAAGGAAGAA
ACAGGGCTTGACAATATTTCATTCGCACAAGTCGGGAGCTTTGGTGACCC
CGGCCGAGATCCGCGAGGGCACACAGTCACCGTTGCTTACGCTGCCTTTT
TGCTTTCGTCGAAGGGCACAAAAGCAGGCGACGATGCGAGTGCCGCGGCC
TTCTTCCCCTTCGGCCAACTTCCTCCACTTGCCTTCGACCATCGAACAAT
CATTCAAGAGGCGTGGCCGAGATTAATAGTATGTGAGAGCGGGGGCAAGA
CCGTTGTGAAGGAGCGTGGATCGGCGAAAGTGCTGTGTGTGTTGCCAGAC
GCCAAGTCGGTGGAACTCGTCCGCAGCGCCACACCCTTCTCATAG
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protein sequence of NO13G02300.1

>NO13G02300.1-protein ID=NO13G02300.1-protein|Name=NO13G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSHGGQAFPCCCMLLSVSYTFFSRGLKSAACLCLAASYSFSPVWLHLPAT
SSSALRMSTGGSFCYRYPRPSVTVDTLIFCAENNDVKLLLIKRGNDPFKG
TWALPGGFVDKDEGLDDAAARELKEETGLDNISFAQVGSFGDPGRDPRGH
TVTVAYAAFLLSSKGTKAGDDASAAAFFPFGQLPPLAFDHRTIIQEAWPR
LIVCESGGKTVVKERGSAKVLCVLPDAKSVELVRSATPFS*
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Synonyms
Publications