NO13G02290, NO13G02290 (gene) Nannochloropsis oceanica

Overview
NameNO13G02290
Unique NameNO13G02290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1018
Alignment locationchr13:637602..638619 -

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Properties
Property NameValue
DescriptionHcp beta-lactamase-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:637602..638619 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
Homology
BLAST of NO13G02290 vs. NCBI_GenBank
Match: EWM21891.1 (hcp beta-lactamase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 2.300e-85
Identity = 183/227 (80.62%), Postives = 192/227 (84.58%), Query Frame = 0
Query:    1 MIEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLLRTLPEDKMHXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDEGIPKNEQEFEKFKRVTEELVEQTGSLTWKKGH 228
            MIEGLQAIDPEYEERMLAFE+DCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNC KYSHPPSCFNLGRL+LGGRGVPQSD RSLKCF+TSCKAGHGMACHHMGLLLLYGKDGGYDV KD+KKAT I                              XXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGD GIP+NEQEFEK+K+VTE+LVEQTG+LTWKKGH
Sbjct:    1 MIEGLQAIDPEYEERMLAFEMDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCAKYSHPPSCFNLGRLYLGGRGVPQSDTRSLKCFDTSCKAGHGMACHHMGLLLLYGKDGGYDVSKDVKKATGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDTGIPRNEQEFEKYKKVTEDLVEQTGALTWKKGH 227          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: CBJ48385.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 180.6 bits (457), Expect = 5.300e-42
Identity = 92/229 (40.17%), Postives = 128/229 (55.90%), Query Frame = 0
Query:    2 IEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLLR-----TLPEDKMHXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDEGIPKNEQEFEKFKRVTEELVEQTGSLTWKK 226
            ++G Q +D EYE+RM  FE DC+ GKG+A ACH VGE+L+VVK D++KA +++  NC   +H PSCFNLGR  L G+G+PQSDA++ K F+++C   H  AC H+G + LYG +G     +D+KKA  +LD +C  G+ DSC  LA  LLR      +P D                              VM KKGDEG+P + +++      TE L  Q   +   K
Sbjct:    1 MDGFQEVDAEYEDRMRTFESDCNDGKGNAVACHQVGEYLSVVKNDFDKAGRIFEANCNTRNHAPSCFNLGRFLLAGKGLPQSDAQAEKVFDSACGKDHQPACLHLGFMHLYGGEG---FKRDIKKAIEVLDTSCSGGLADSCNMLAKQLLRHDGKGPVPRD------PPRARGLLEKGCSHNHGPSCFNLTVMLKKGDEGVPSDYKKYXXXXXKTESLAAQLQGIDGNK 220          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: CCA21434.1 (hcp betalactamaselike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 145.2 bits (365), Expect = 2.500e-31
Identity = 78/220 (35.45%), Postives = 112/220 (50.91%), Query Frame = 0
Query:    3 EGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLL-----RTLPEDKMHXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDEGIPKNEQEFEKFKRVTEELVEQ 218
            E +  ++   E+R+  F+ +CD GKGD  ACHS GE+L VV+ DYN AA+VY  NC +  +  SCFNLGRL L G+G+ ++D ++L+ FE+SC   H  AC H  L+ L     G    KD+ +  + L  AC +    SC  + S  L         + K                             VM K GD G+ KNE+ +E++K+ TE+LV Q
Sbjct:   14 EEVDGVNQAIEDRLHEFKANCDNGKGDPMACHSWGEWLTVVEKDYNSAAEVYRKNCEQNCYAASCFNLGRLTLAGKGIEENDEKALELFESSCAKKHAQACQHAALMYL----EGIGTSKDVLRGLAGLKTACKQDDAGSCSRVGSFYLDPPKIENKEQSKKLQRDPIRAKKYYGRACDANFAPACYNLAVMFKNGDTGVDKNEELYEEYKKKTEQLVNQ 229          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: XP_009033602.1 (hypothetical protein AURANDRAFT_70787 [Aureococcus anophagefferens] >EGB11209.1 hypothetical protein AURANDRAFT_70787 [Aureococcus anophagefferens])

HSP 1 Score: 142.1 bits (357), Expect = 2.100e-30
Identity = 103/215 (47.91%), Postives = 128/215 (59.53%), Query Frame = 0
Query:    6 QAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLLRTLPEDKMHXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDEGIPKNEQEFEKFKRVTEELVEQTGS 221
            + +  +YEERM++  +DC  GKGD  ACH+VGEF +V++ DY  A + Y  NC    H  SCF LGRL LGGRG    +AR  + F   C  GH  ACHH+G+L    KD           A + L+KAC  G   SCY L  + LR         XXXXXXXXXXXXXXXXXXXXXXXXX VM K GD G+P++ + F+K+   T ELV   G+
Sbjct:    5 ETLPKDYEERMVSASVDCAGGKGDGDACHAVGEFFSVIRKDYAAARETYGKNCEARKHGASCFALGRLLLGGRGGAADEARGERAFAAGCDRGHAPACHHLGVLAFKRKDDA--------AALAHLEKACDGGDAASCYVLGGYFLR-----PGAAXXXXXXXXXXXXXXXXXXXXXXXXXAVMMKNGDVGVPRDAKLFDKYAARTRELVAAAGA 206          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: OQS05958.1 (hcp beta-lactamase [Thraustotheca clavata])

HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19
Identity = 93/226 (41.15%), Postives = 123/226 (54.42%), Query Frame = 0
Query:    8 IDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQS------------DARSLKCFETSCKAGHGMACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHLLRTLPEDKMHXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHKKGDEGIPKNEQEFEKFKRVTEELVEQTGSL 222
            ++ E E+R   F  +CD G GD  ACHS GE+LAV+   Y++AAKVY  NC    +  SCFN GRL L G+GV  S            DA+  +  E +C+  H   CHH+GL+ L     G  + K+L+K  +                       +       XXXXXXXXXXXXXXXXXXXXXXXXXXX    KGD G+PKN++ +E++   T+ LV+Q G +
Sbjct:   12 LNEELEKRHYEFVSNCDDGNGDPSACHSYGEWLAVIDKQYDQAAKVYKKNCDVKQYGASCFNYGRLVLAGKGVEASDQVAVEHFSALKDAKECENVEKACELNHTHGCHHLGLMYL----SGMGIEKNLEKGMAXXXXXXXXXXXXXXXXXXXXXXXS-QSKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGDAGVPKNDKLYEEYSEKTKFLVQQAGGM 232          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: XP_002905225.1 (hcp beta-lactamase-like protein [Phytophthora infestans T30-4] >EEY53607.1 hcp beta-lactamase-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.2 bits (256), Expect = 1.100e-18
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    5 LQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSC 96
            ++ ++ + EER   F  +C+ G GDA ACHS GE+LAVV  +YN AAK+Y  NC+K  +P SCFNLGRL L G+G  Q D ++ K F+ SC
Sbjct:   12 VRRVNQQLEERHYEFRSNCNDGDGDASACHSWGEWLAVVDKNYNDAAKMYELNCSKNGYPASCFNLGRLKLAGKGAEQDDPKAFKLFQKSC 102          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: XP_009521463.1 (hypothetical protein PHYSODRAFT_486146 [Phytophthora sojae] >EGZ26175.1 hypothetical protein PHYSODRAFT_486146 [Phytophthora sojae])

HSP 1 Score: 102.4 bits (254), Expect = 1.800e-18
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    5 LQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSC 96
            ++ ++ + EER   F  +C+ G GDA ACHS GE+LAVV  +Y+ AAK+Y  NC+K S+P SCFNLGRL L G+G  Q D  + K FE SC
Sbjct:   12 VKRVNQQLEERHYEFRSNCNDGDGDASACHSWGEWLAVVDKNYDDAAKMYELNCSKNSYPASCFNLGRLKLAGKGSAQDDPEAFKLFEKSC 102          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: CCI10138.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 102.1 bits (253), Expect = 2.400e-18
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    3 EGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSC 96
            E +  ++ E E+R   F  +CD G+GD  ACHS GE+L VV+ DY  AA VY  NC +  +  SCFNLGRL L G+GV ++D ++L+ FE SC
Sbjct:   14 EEVDHVNQEIEDREHEFRANCDDGEGDPMACHSWGEWLTVVEKDYTSAANVYRKNCEEKCYAASCFNLGRLMLAGKGVEENDEKALELFERSC 106          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: POM75474.1 (Hcp beta-lactamase-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 101.3 bits (251), Expect = 4.100e-18
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 0
Query:    5 LQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSC 96
            ++ ++ + EER   F  +C+ G GDA ACHS GE+LAVV  +Y+ AAK+Y  NC+K  +P SCFNLGRL L G+G  Q+D  + K FE SC
Sbjct:   12 VKRVNQQLEERHYEFRSNCNDGDGDASACHSWGEWLAVVDKNYSDAAKMYELNCSKNGYPASCFNLGRLKLAGKGSEQNDPEAFKLFEKSC 102          
BLAST of NO13G02290 vs. NCBI_GenBank
Match: ETI36042.1 (hypothetical protein F443_17758 [Phytophthora parasitica P1569] >ETK76271.1 hypothetical protein L915_17287 [Phytophthora parasitica] >ETL29712.1 hypothetical protein L916_17180 [Phytophthora parasitica] >ETL82940.1 hypothetical protein L917_17015 [Phytophthora parasitica] >ETM36167.1 hypothetical protein L914_17084 [Phytophthora parasitica] >ETO64731.1 hypothetical protein F444_17796 [Phytophthora parasitica P1976] >ETP05818.1 hypothetical protein F441_17636 [Phytophthora parasitica CJ01A1] >ETP33974.1 hypothetical protein F442_17613 [Phytophthora parasitica P10297] >KUF79913.1 Hcp beta-lactamase protein [Phytophthora nicotianae])

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-17
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0
Query:    5 LQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSC 96
            ++ ++ + EER   F  +C+ G GDA ACHS GE+LAVV  +Y  AA +Y  NC+K  +P SCFNLGRL L G+G  Q D  + K FE SC
Sbjct:   12 VKRVNQQLEERHYEFRSNCNDGNGDASACHSWGEWLAVVDKNYKDAANMYELNCSKNGYPASCFNLGRLKLAGKGAEQDDLEAFKLFEKSC 102          
The following BLAST results are available for this feature:
BLAST of NO13G02290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21891.12.300e-8580.62hcp beta-lactamase-like protein [Nannochloropsis g... [more]
CBJ48385.15.300e-4240.17conserved unknown protein [Ectocarpus siliculosus][more]
CCA21434.12.500e-3135.45hcp betalactamaselike protein putative [Albugo lai... [more]
XP_009033602.12.100e-3047.91hypothetical protein AURANDRAFT_70787 [Aureococcus... [more]
OQS05958.11.300e-1941.15hcp beta-lactamase [Thraustotheca clavata][more]
XP_002905225.11.100e-1850.55hcp beta-lactamase-like protein [Phytophthora infe... [more]
XP_009521463.11.800e-1851.65hypothetical protein PHYSODRAFT_486146 [Phytophtho... [more]
CCI10138.12.400e-1848.39unnamed protein product [Albugo candida][more]
POM75474.14.100e-1850.55Hcp beta-lactamase-like protein [Phytophthora palm... [more]
ETI36042.11.200e-1749.45hypothetical protein F443_17758 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001668NSK001668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02290.1NO13G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596305gene_6783Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100231g4gene8543Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02290.1NO13G02290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02290 ID=NO13G02290|Name=NO13G02290|organism=Nannochloropsis oceanica|type=gene|length=1018bp
ATGATTGAGGGTCTCCAGGCGATCGACCCGGAGTATGAGGAGCGGATGCT
TGCCTTTGAGATAGATTGTGACAAAGGCAAAGGGGATGCCTGGGCCTGCC
ACTCAGTTGGGGAGTTTCTGGCTGTCGTCAAGgtatgttttgaggctatg
ggaataatatgctaatcaaagaaacagtgcaggcgtgttaggatggggtt
gctttgtgtctgccgaacagaaatcgggcagttagggtcagaaagaggct
gactccctcatcccgtcctaccctacccccaccttgcggaaattatcgta
gGGCGACTACAATAAAGCTGCAAAGGTATACACGGATAATTGCACTAAGT
ATAGCCATCCTCCCTCATGTTTCAACCTTGGTCGTCTCTTTTTGGGTGGG
CGAGGCGTCCCGCAGAGCGACGCCCGGTCCCTGAAGTGCTTCGAGACCTC
CTGCAAAGCTGGGCATGGTATGGCCTGCCATCACATGGGGCTGCTCCTTT
TGTACGGGAAAGATGGGGGCTACGACGTTGGTAAGGACCTCAAGAAAGCG
ACGTCCATCTTGGATAAGGCCTGTGGGGAGGGCATCCCGGATAGTTGTTA
TGCGTTGGCTAGCCACTTGCTGCGCACCCTGCCTGAGGACAAGATGCACA
AGCGGGACCCTTTGCGGGCGAAGGGTTTATTGGAAAAGGGTTGTGCGCGG
GGCCATGGACCCTCATGCTTCAATTTGGCGGTGATGCACAAGAAGGGCGA
TGAGGGGATTCCCAAgtacgtgatgtcagtggagttggagtagggtgcag
gttgggtctccgttacaaaccaacaaccgggctttcttgcatttcaccca
cgtcctaacgaggaccagatcatccacccacctcttctctttcattttca
ctgacatacttctctaccgcaacaatacagGAACGAGCAGGAGTTCGAAA
AGTTCAAAAGAGTAACCGAGGAGCTAGTGGAGCAAACAGGCTCGCTCACA
TGGAAGAAGGGGCATTAG
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protein sequence of NO13G02290.1

>NO13G02290.1-protein ID=NO13G02290.1-protein|Name=NO13G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MIEGLQAIDPEYEERMLAFEIDCDKGKGDAWACHSVGEFLAVVKGDYNKA
AKVYTDNCTKYSHPPSCFNLGRLFLGGRGVPQSDARSLKCFETSCKAGHG
MACHHMGLLLLYGKDGGYDVGKDLKKATSILDKACGEGIPDSCYALASHL
LRTLPEDKMHKRDPLRAKGLLEKGCARGHGPSCFNLAVMHKKGDEGIPKN
EQEFEKFKRVTEELVEQTGSLTWKKGH*
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Synonyms
Publications