NO13G02280, NO13G02280 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02280 vs. NCBI_GenBank
Match: EWM21889.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 615.9 bits (1587), Expect = 1.300e-172 Identity = 339/570 (59.47%), Postives = 406/570 (71.23%), Query Frame = 0 Query: 15 RRPNHHRYQTNFLLLLATMI---TSVAARPTPSKATFLPVLNPPPRPRGARRHAQHQSNQLIDTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSN-----KILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRK 577 R + ++Q LL T++ S ++ T A FL L PP RP A +++ + ++GTT TF++LYG+RLP+WLL+RVESLG+TRPT VQ+EALGAIL+GEDVV+ +QTGTGKTLAF+LPLLAGID +K AVQA+VVVPSRELGLQVASVAKQL++G +YYR + G SN KIL+MSLLEGSKN RQKAWVLAEPPHVVIGNP +L++LVE+GGIRYHQVKMVV+DEVDACLT ET +LQ LLGKYLSPSFLT+ELEEEA K +E L+PQGAMK+ G GG AR+LAPWKLV RQT+FVSA+IPQH HFIKQCVQQQWTLR+P+HV VTPGELMPP L+H YLV PTKA+K AAL AFLRRE++KGRLQAC IFTADD++AE +AA L S GL +QAL+ +HI RRAKVMDAFRAGES LVTTDFAARGLD+PR+SHV M D+ +A+TYLHRGG E FAL RLAN+LKI++RR+GVM++ Sbjct: 45 RTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSL-PPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGS--ESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGL--AAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKR 609
BLAST of NO13G02280 vs. NCBI_GenBank
Match: CBN75240.1 (DEAD box helicase [Ectocarpus siliculosus]) HSP 1 Score: 337.8 bits (865), Expect = 6.700e-89 Identity = 233/531 (43.88%), Postives = 296/531 (55.74%), Query Frame = 0 Query: 85 TFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE--DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFL---TSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDG---------------------LDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKAGRGETERKRGKR 590 TF EL+ RLP+WLL+R+E LGF PT+VQR+AL IL E D V+ AQTG+GKTLAFLLPLL +D S+ AVQ +VVVP+RELGLQVA VAK+L+AG T +G +KI VMS+LEGS N RQ+AW A+PPH+VIGNP +L+RLV G +R + V VV+DEVDACL TRA L LL + LSP+ E EE AA A+ G G T G+ R KL RQTVF SAT+PQHNHFI+QCVQ+QWTL +P+HVQV E MPP L HYY+VCP + +KLA LR R +F + E IAA L ++ G XXXXXXXXXXXXX + L + + RA M FR G++R+LV+TD AARGLD+P I+HV D+P D E Y+HRGG +EF + RL N + + ++++ + + R+R KR Sbjct: 5 TFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFLLPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAAG----------------------------------TSSGRDSKIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPTHADEDEGEDEEGAARLAEVGAGRVT-------------GAAAPVNR-----KLRDRQTVFASATVPQHNHFIRQCVQKQWTLTEPVHVQVHAKEAMPPCLSHYYVVCPPE-KKLAVLRTDTRG----------LVFALATKPLEGIAASLDKALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEFLRQELGLNARADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINL-------GSSRRRPKR 465
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAX28710.1 (hypothetical protein FisN_33Hh012 [Fistulifera solaris]) HSP 1 Score: 298.9 bits (764), Expect = 3.500e-77 Identity = 203/525 (38.67%), Postives = 276/525 (52.57%), Query Frame = 0 Query: 74 DTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAIL--DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRRETRAQLQA-----LLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAP-WKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAE--VIAAGLVESDGL---DXXXXXXXXXXXXXXLQA----LLNKDHIKRRAKVMDAFRAGES--RVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKA 578 D +LD T T + Y +LP+WLL R + LG+ PT +Q AL +L + DVVIQA+TG+GKTL +LLP LA ID ++ VQA++VVP+RELGLQVA V K+L V + K+LVMS+L+GS+N RQ+AW AEPP VVIG P LS++V+ GGI RY+ ++MVV+DEVDACL QL A LL K LS +FL DE ED +G A L P +L RQT+ SATIPQH HFIKQCVQ +WT +P+ V + GE L+PP L+H Y+VC + KLAAL+ F R+ S +F + + E +A L G+ + +QA L +D++ +RA M+AF + RVL +TD AARGLD+ ++HV +D+P DA+TY+HR G +EF L+RLAN L +++R + +KA Sbjct: 30 DGALDE---THTLLQRYQNKLPSWLLQRCQDLGYIHPTRIQTAALDVVLQENKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAIIVVPTRELGLQVAKVTKRL--------------------------------------VAASPEKMLVMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFLDK---------------DEV---------EDTIG-----AMSLTPKRRLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPMPFKVLVFAEEQRPLEEMALALALEAEHGVYWQESTAKALQDNPTDKPIQAITAVLRYQDNLTQRAAAMEAFTGSDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSLVAPEQEFVLNRLANKLSLELRCVARQKKA 483
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_002177884.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50698.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 297.0 bits (759), Expect = 1.300e-76 Identity = 202/548 (36.86%), Postives = 280/548 (51.09%), Query Frame = 0 Query: 78 DNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAIL-DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDAC-------LTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQ---ACAIFTAD----DQDAEVIA----AGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFR-----------------------AGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKAGRGE 582 D + +F Y LP+WL+ + G+T P+ +Q +AL AIL + D V+QA+TG+GKTLA+LLP LA ID S+ AVQA++VVP+RELGLQVA VAK+L+A T+NG +I+VMS+L+GS+N RQ+AW AEPPH+VIG P L +V+ GGI RY+ VK +V+DEVDAC LT + L LL KYLSP++ E D+ +L V + A P QRQT+F SATIPQH HF+KQC Q QWTLR+P HV + PGE L+P L+H Y VC + +KLA LR + + +K ++ +F+ ++ A+++A G++ DG + L +D + +RA +D+FR A RVL +TD AARGLDI ISHV +D+P DA+TY+HR G +EF L+RL N L + + + +K R E Sbjct: 126 DGSLSAESFESRYAAVLPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGSRAAVQALIVVPTRELGLQVARVAKRLAAASTQND---------------------------NVTLNG--GRIMVMSVLQGSQNRRQRAWAWAEPPHLVIGTPQELCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTYDDGSANE----------ADDNVL--------RSVKTSTKTATSTRPLS-SQRQTIFASATIPQHRHFLKQCAQNQWTLREPTHVCLRPGEQLLPATLEHSYAVCRSTDQKLATLRRLVTKIYAKSVIEPPKKVLVFSDARRPLEEMAQILANDIEGGMLWKDG----YGKEQERDVRAVVAVLRYEDSLSQRAAAIDSFRGDGYTMASGASQTYTSRDNDSDTAPSLRVLFSTDLAARGLDIADISHVIHFDLPPDADTYVHRAGRTGRFGRSGQVLCIISPDQEFVLTRLTNKLNVDTKCIARQQKKKRVE 621
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAX23124.1 (hypothetical protein FisN_33Lh012 [Fistulifera solaris]) HSP 1 Score: 293.1 bits (749), Expect = 1.900e-75 Identity = 197/526 (37.45%), Postives = 271/526 (51.52%), Query Frame = 0 Query: 74 DTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE---DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRRETRAQLQA-----LLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAA--------GLVESDGLDXXXXXXXXXXXXXXLQALLN-KDHIKRRAKVMDAFRAGES---RVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKA 578 D +LD T T + Y +LP+WLL R + LG+ PT +Q AL +L E DVVIQA+TG+GKTL +LLP LA ID ++ VQA++VVP+RELGLQVA VAK+L V + +KI +MS+L+GS+N RQ+AW AEPP VVIG P LS++V+ GGI RY+ ++MVV+DEVDACL QL A LL K LS +FL + E+ A + +L RQT+ SATIPQH HFIKQCVQ +WT +P+ V + GE L+PP L+H Y+VC + KLAAL+ F R+ S +F + + E +A G+ + + A+L +D++ +RA MDAF + RVL +TD AARGLD+ ++HV +D+P DA+TY+HR G +EF L+RLAN L + +R + +KA Sbjct: 51 DGALDQ---TDTLLQRYQYQLPSWLLQRCQDLGYIHPTRIQIAALDVLLLDEHKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAILVVPTRELGLQVAKVAKRL--------------------------------------VAASPHKIYIMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFLDKDEVEDTMGALSSTRPKR---------------------------RLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPVPFKVLVFAEEQRPLEEMALALAWEAEHGVYWQESTAKAVQDNPTDKPIQAITAVLRYQDNLTQRAAAMDAFTRSDDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSFVAPEQEFVLNRLANKLSLDLRCVARQKKA 507
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_002290925.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91032.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 282.0 bits (720), Expect = 4.400e-72 Identity = 203/533 (38.09%), Postives = 277/533 (51.97%), Query Frame = 0 Query: 104 SLGFTRPTMVQREALGAIL-----------------DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQL-SAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTR---------RETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLV---QRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRRE----QSKGRLQACAIFTADDQDAEVIA-------AGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRA------------------------GESRVLVTTDFAARGLDIPRISHVAMYDIP--ADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMR 570 +LG+ PT++Q L +L DV+I AQTG+GKTLA+LLPLL+ ID S+ AVQA+VVVP+RELGLQV VA++L GRV XXXXXXXXXXXX S KI++M LL+GS NTRQ+AW AEPPH+VIG P LS +V +GG+R + VK+VV+DEVDACL+R + L LL ++LSP++ + A + +G G + E VG+ + + +K+ RQT+F SATIPQHNHF+KQCV+ WTLR+PI V V+PGEL+PP L+H Y+VC K K+ LR ++++E IF+ + E +A G+V +G + L +D + RA M+ FR + R+L++TD AARGLDI ISHV +D+P D +TY+HRGG +EF L RLAN L +++R Sbjct: 3 NLGYVNPTLLQSRVLDILLPTLDTSTSTNESSEQQNQPSDVIIHAQTGSGKTLAYLLPLLSRIDPSRSAVQALVVVPTRELGLQVVRVARRLCGGGRV---DVGVTNDDDNETXXXXXXXXXXXXXXXXXXXXSKSKKIMIMPLLQGSSNTRQRAWAWAEPPHIVIGTPEELSSMVTRGGVRVNSVKIVVVDEVDACLSRGGNGGMSDGGSSSGTLHELLSRHLSPTY---QEVGRVATSVEGSDGRTFQMSTSSDSGETSVGNHDLSSHTMNGFKVYADKYRQTIFASATIPQHNHFMKQCVRNGWTLREPIRVNVSPGELVPPTLKHVYVVCRDKGTKVGGLRRWMKKEIAAXXXXXXXTKMLIFSDPRRPLETLADMLAKDFNGIVWREG----YTPMQENGYDAVISVLRMEDSLGTRAAAMEGFRGPNERDNGAVGGYANQGSDIGKEKRDKLRILLSTDLAARGLDISGISHVINFDLPNDNDGDTYVHRGGRAGRLGKKGQVMSLITADQEFVLERLANRLALELR 525
BLAST of NO13G02280 vs. NCBI_GenBank
Match: OEU22544.1 (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 276.9 bits (707), Expect = 1.400e-70 Identity = 184/528 (34.85%), Postives = 263/528 (49.81%), Query Frame = 0 Query: 69 SNQLIDTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE--DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRR-----------ETRA---QLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQA------LLNKDHIKRRAKVMDAF-RAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLG 573 S+ L D +L + +F+ELY + LP WLL + E + PT++Q+ +L D + +VIQAQTG+GKTL +LLPLL+ ++ + +VQAM+VVP+RELGLQVA VAK+L K +VMSLLEGS RQ+ W AE P VVIG P L +V GG+ R V VV+DEVDACL +T+A L LL K+LSP+F+ DE +I +D V + D++ + K RQT+F SATIPQH HF+KQC QWTL +P++V +PGE +PP L H Y+VC + +K+A LR +++ + + + ++I L S +D +Q+ L +D + +RA AF E R++ TTD AARGLDI ++H+ +D+P DA+TYLHR G +EF L RL+N L + ++ +G Sbjct: 55 SSYLCDATLSD----KSFSELYSDNLPEWLLEKCEEYNYKCPTLIQQRSLDCFFDDDPNSMVIQAQTGSGKTLTYLLPLLSKLE-DRASVQAMIVVPTRELGLQVAMVAKRL-----------------------------------------VGRKFMVMSLLEGSSLKRQRKWAWAETPQVVIGTPTELLDMVRYGGLPRISSVNTVVVDEVDACLVHTSSLQGGSNNSVDTKALASSLNELLSKFLSPTFI-----------------DEDDII------DDEVITIADDSNKKRKRKFRHRQTIFCSATIPQHRHFLKQCKANQWTLEEPVYVCTSPGEHLPPTLDHAYMVCNSNEKKMATLRNIIKKLNTSSNKILVFFDSTSSRPLDIIGKKLALS--IDNGIFYEDKKTNLEDIQSNPVVSILRFEDSLSQRAGATKAFAERSEFRIMATTDLAARGLDILGVTHIIHFDLPIDADTYLHRSGRAGRLGQKGSVISILNPDQEFVLKRLSNALSVDVKCVG 511
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAQ87246.1 (ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidium nitens]) HSP 1 Score: 240.0 bits (611), Expect = 1.900e-59 Identity = 165/496 (33.27%), Postives = 234/496 (47.18%), Query Frame = 0 Query: 87 AELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIF----------TADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDH--IKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGG---XXXXXXXXXXXXXXXXXXEEFALSRLANTLKIK 568 A L G +P+WL+ R E LG+ PT Q EAL L G D VI AQTG+GKTL +LLP+L+GID + +VQA+VVVP+RELG+QVA VA+QL AG+ T S KI VM+LL+G+ RQK W+ A+PPH+V+G P + +++E +R + +K +V+DE DA T L LL ++ EA RQT+F SAT+PQHN + + V+ +W +HV V P + +P L H YLVC +K+ +L+ + R+Q A IF T + E +A L E LQ LL +++ +++RA ++ FR G R+LV TD AARGLD+P +SHV +D+P DA +Y+HR G E FAL RL N ++++ Sbjct: 123 ARLCGRSVPDWLIRRAEDLGYGTPTGAQTEALPLALQGRDCVIHAQTGSGKTLTYLLPVLSGIDPKRSSVQAIVVVPTRELGIQVARVARQL-AGK---------------------GKDQVADEEAANTKKLKSGKIQVMALLDGAGGNRQKIWLKADPPHLVVGTPDRIHKMIEYRNLRTNGLKFIVVDEFDAYPAATRTTGSLNKLL-----------TVDSEAG----------------------------------------ARQTIFASATVPQHNRAVTELVKNKWARNDLVHVHVDPIQHVPKFLDHRYLVCEGD-DKIKSLQKLVERDQP----SAAIIFAHDLTERNKRTGETPSVEAVAEALSEGQ--------------PEALQPLLLQENARVQKRASIVQEFREGNRRLLVATDLAARGLDLPEVSHVYNFDLPLDATSYVHRAGRTARKPIAGTKGTVTCLVSSKEVFALKRLLNAIRVE 526
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_024378108.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Physcomitrella patens] >PNR52704.1 hypothetical protein PHYPA_009079 [Physcomitrella patens]) HSP 1 Score: 227.6 bits (579), Expect = 9.800e-56 Identity = 157/493 (31.85%), Postives = 230/493 (46.65%), Query Frame = 0 Query: 87 AELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXL---QALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRG---GXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGV 574 ++L ++P ++L + E +G++ PT+VQ+EAL +L G D ++ AQTG+GKTLA+LLP+ A I ++ AVQA+VVVP+RELG+QVA VA++L AG+ P GT ++VM+LLEG N+RQKAW+ AEPP +V+G ++R++E +R + V +VIDEVDA + + L LL +Y P QRQT+ SATIPQH F+ C+Q +W +H+ V P + MP L H Y+VC K ++L AL + L+ + + AI +DQ + AG + L L + H+ RA + FR G +LV T+ AARGLD+P +SHV ++ P +Y+HR G E F L RL N + +K L V Sbjct: 118 SKLCMNKVPEYVLRKAEEVGYSVPTLVQQEALPVLLSGRDCILHAQTGSGKTLAYLLPIFAKILPARAAVQAIVVVPTRELGMQVAKVARKL-AGKGGSEEDGK-----------------------APKEKGT---VMVMTLLEGGTNSRQKAWLKAEPPQIVVGTLERIARMIETKNLRTNAVNTIVIDEVDAMMGAAKEGGHLHKLLSEYTRPQ---------------------------------------------------QRQTILASATIPQHRRFLNDCIQNKWVKEDVMHIHVRPEDKMPSYLHHRYVVC-EKDDRLPALLSLLQSDAPR-----AAIIFVNDQSEKAKRAGNTPTTITVADYIAKMKFSSDDALWEPLVLEEESHVNARAATLADFRDGRC-LLVATELAARGLDLPEVSHVYNFEWPPSVTSYIHRAGRTGRQPITEELGTVTSFITPKELFVLRRLENEMMLKFEALKV 525
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_009038460.1 (hypothetical protein AURANDRAFT_54120, partial [Aureococcus anophagefferens] >EGB06709.1 hypothetical protein AURANDRAFT_54120, partial [Aureococcus anophagefferens]) HSP 1 Score: 223.4 bits (568), Expect = 1.900e-54 Identity = 156/472 (33.05%), Postives = 216/472 (45.76%), Query Frame = 0 Query: 107 FTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIR-YHQVKMVVIDEVDACL--TRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMR 576 + PT VQ E + LDG D +I AQTG+GKTLA+L PL A +DAS+Q QA+V+VP+RELGLQVA VA++L++ ++VMSLL+GS + RQ+AW AEPPHVV+GN ++ + GG+R V+ VV+DEVDA L R + RA L A L + ET RQTVF +A++ Q H ++ +W+ + P +V+V E P L H+ V P K KLA LR LR + A +F + + + IA L ++DG+ L +D + R + +DA+ AG+ VL+ TD AARGLD PR + V +D P DA YLHR G E FAL RLAN L++ + + V R Sbjct: 38 YATPTAVQAETIPVALDGHDCLIHAQTGSGKTLAYLAPLFARVDASRQTTQAVVIVPTRELGLQVARVARRLASAL---------------------------------PAAPDGKPVMVMSLLDGSSHRRQRAWAWAEPPHVVVGNAKSVHGMAANGGLRCADAVRYVVVDEVDAFLDPARSDDRAALHAFLFR-------------------------ET------------------------------RQTVFATASLEQPRHLAERLASMRWSKKAPSYVRVGAAEATPGSLSHFSAVVPDKGAKLAVLRKMLRDVKRSSTRFAAIVFFDERRPLQAIADKLEQADGV--------------ACAVLDGRDDLSSRKREVDAYTAGDVDVLLCTDLAARGLDAPRTTLVVQFDFPGDATAYLHRAGRAARLGRAGAVLTLLEAREAFALERLANYLRVDVDAVDVSR 407 The following BLAST results are available for this feature:
BLAST of NO13G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02280 ID=NO13G02280|Name=NO13G02280|organism=Nannochloropsis oceanica|type=gene|length=1770bpback to top protein sequence of NO13G02280.1 >NO13G02280.1-protein ID=NO13G02280.1-protein|Name=NO13G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bpback to top Synonyms
Publications
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