NO13G02280, NO13G02280 (gene) Nannochloropsis oceanica

Overview
NameNO13G02280
Unique NameNO13G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr13:635658..637427 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase, DEAD-box type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:635658..637427 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0005524ATP binding
GO:0004386helicase activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO13G02280 vs. NCBI_GenBank
Match: EWM21889.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 615.9 bits (1587), Expect = 1.300e-172
Identity = 339/570 (59.47%), Postives = 406/570 (71.23%), Query Frame = 0
Query:   15 RRPNHHRYQTNFLLLLATMI---TSVAARPTPSKATFLPVLNPPPRPRGARRHAQHQSNQLIDTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSN-----KILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRK 577
            R  +  ++Q   LL   T++    S ++  T   A FL  L PP RP      A     +++  + ++GTT  TF++LYG+RLP+WLL+RVESLG+TRPT VQ+EALGAIL+GEDVV+ +QTGTGKTLAF+LPLLAGID +K AVQA+VVVPSRELGLQVASVAKQL++G +YYR                        +       G SN     KIL+MSLLEGSKN RQKAWVLAEPPHVVIGNP +L++LVE+GGIRYHQVKMVV+DEVDACLT  ET  +LQ LLGKYLSPSFLT+ELEEEA       K +E  L+PQGAMK+ G   GG  AR+LAPWKLV RQT+FVSA+IPQH HFIKQCVQQQWTLR+P+HV VTPGELMPP L+H YLV PTKA+K AAL AFLRRE++KGRLQAC IFTADD++AE +AA L  S GL               +QAL+  +HI RRAKVMDAFRAGES  LVTTDFAARGLD+PR+SHV M D+  +A+TYLHRGG                  E FAL RLAN+LKI++RR+GVM++
Sbjct:   45 RTRSTRQWQRETLLFSVTLLYVTASASSSHTLRHAAFLSSL-PPRRPTSQVHGALPPGKEMMHVAENDGTTAETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGS--ESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWTLREPMHVHVTPGELMPPGLRHGYLVAPTKADKPAALLAFLRRERAKGRLQACVIFTADDREAEKMAAILARSGGL--AAGGQEPRGESSVVQALVGGEHIARRAKVMDAFRAGESWGLVTTDFAARGLDVPRVSHVIMLDVAGEADTYLHRGGRAGRMGRPGWVVSLVSETEAFALVRLANSLKIEVRRMGVMKR 609          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: CBN75240.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 337.8 bits (865), Expect = 6.700e-89
Identity = 233/531 (43.88%), Postives = 296/531 (55.74%), Query Frame = 0
Query:   85 TFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE--DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFL---TSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDG---------------------LDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKAGRGETERKRGKR 590
            TF EL+  RLP+WLL+R+E LGF  PT+VQR+AL  IL  E  D V+ AQTG+GKTLAFLLPLL  +D S+ AVQ +VVVP+RELGLQVA VAK+L+AG                                  T +G  +KI VMS+LEGS N RQ+AW  A+PPH+VIGNP +L+RLV  G +R + V  VV+DEVDACL    TRA L  LL + LSP+       E EE AA  A+ G G  T             G+     R     KL  RQTVF SAT+PQHNHFI+QCVQ+QWTL +P+HVQV   E MPP L HYY+VCP + +KLA LR   R            +F    +  E IAA L ++ G                       XXXXXXXXXXXXX  + L  +  +  RA  M  FR G++R+LV+TD AARGLD+P I+HV   D+P D E Y+HRGG                  +EF + RL N + + ++++ +        + R+R KR
Sbjct:    5 TFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFLLPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAAG----------------------------------TSSGRDSKIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPTHADEDEGEDEEGAARLAEVGAGRVT-------------GAAAPVNR-----KLRDRQTVFASATVPQHNHFIRQCVQKQWTLTEPVHVQVHAKEAMPPCLSHYYVVCPPE-KKLAVLRTDTRG----------LVFALATKPLEGIAASLDKALGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEFLRQELGLNARADAMSLFREGKTRLLVSTDMAARGLDVPEITHVFNLDLPLDGEGYVHRGGRAGRLGRPGKVISLVTPQQEFVIRRLGNGIGVDIKKINL-------GSSRRRPKR 465          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAX28710.1 (hypothetical protein FisN_33Hh012 [Fistulifera solaris])

HSP 1 Score: 298.9 bits (764), Expect = 3.500e-77
Identity = 203/525 (38.67%), Postives = 276/525 (52.57%), Query Frame = 0
Query:   74 DTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAIL--DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRRETRAQLQA-----LLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAP-WKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAE--VIAAGLVESDGL---DXXXXXXXXXXXXXXLQA----LLNKDHIKRRAKVMDAFRAGES--RVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKA 578
            D +LD    T T  + Y  +LP+WLL R + LG+  PT +Q  AL  +L  +  DVVIQA+TG+GKTL +LLP LA ID ++  VQA++VVP+RELGLQVA V K+L                                      V  +  K+LVMS+L+GS+N RQ+AW  AEPP VVIG P  LS++V+ GGI RY+ ++MVV+DEVDACL       QL A     LL K LS +FL                 DE          ED +G     A  L P  +L  RQT+  SATIPQH HFIKQCVQ +WT  +P+ V +  GE L+PP L+H Y+VC  +  KLAAL+ F R+  S        +F  + +  E   +A  L    G+   +              +QA    L  +D++ +RA  M+AF   +   RVL +TD AARGLD+  ++HV  +D+P DA+TY+HR G                  +EF L+RLAN L +++R +   +KA
Sbjct:   30 DGALDE---THTLLQRYQNKLPSWLLQRCQDLGYIHPTRIQTAALDVVLQENKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAIIVVPTRELGLQVAKVTKRL--------------------------------------VAASPEKMLVMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFLDK---------------DEV---------EDTIG-----AMSLTPKRRLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPMPFKVLVFAEEQRPLEEMALALALEAEHGVYWQESTAKALQDNPTDKPIQAITAVLRYQDNLTQRAAAMEAFTGSDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSLVAPEQEFVLNRLANKLSLELRCVARQKKA 483          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_002177884.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50698.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 297.0 bits (759), Expect = 1.300e-76
Identity = 202/548 (36.86%), Postives = 280/548 (51.09%), Query Frame = 0
Query:   78 DNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAIL-DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDAC-------LTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQ---ACAIFTAD----DQDAEVIA----AGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFR-----------------------AGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKAGRGE 582
            D   +  +F   Y   LP+WL+ +    G+T P+ +Q +AL AIL +  D V+QA+TG+GKTLA+LLP LA ID S+ AVQA++VVP+RELGLQVA VAK+L+A                                   T+NG   +I+VMS+L+GS+N RQ+AW  AEPPH+VIG P  L  +V+ GGI RY+ VK +V+DEVDAC       LT     + L  LL KYLSP++      E           D+ +L          V +    A    P    QRQT+F SATIPQH HF+KQC Q QWTLR+P HV + PGE L+P  L+H Y VC +  +KLA LR  + +  +K  ++      +F+      ++ A+++A     G++  DG                +  L  +D + +RA  +D+FR                       A   RVL +TD AARGLDI  ISHV  +D+P DA+TY+HR G                  +EF L+RL N L +  + +   +K  R E
Sbjct:  126 DGSLSAESFESRYAAVLPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGSRAAVQALIVVPTRELGLQVARVAKRLAAASTQND---------------------------NVTLNG--GRIMVMSVLQGSQNRRQRAWAWAEPPHLVIGTPQELCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTYDDGSANE----------ADDNVL--------RSVKTSTKTATSTRPLS-SQRQTIFASATIPQHRHFLKQCAQNQWTLREPTHVCLRPGEQLLPATLEHSYAVCRSTDQKLATLRRLVTKIYAKSVIEPPKKVLVFSDARRPLEEMAQILANDIEGGMLWKDG----YGKEQERDVRAVVAVLRYEDSLSQRAAAIDSFRGDGYTMASGASQTYTSRDNDSDTAPSLRVLFSTDLAARGLDIADISHVIHFDLPPDADTYVHRAGRTGRFGRSGQVLCIISPDQEFVLTRLTNKLNVDTKCIARQQKKKRVE 621          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAX23124.1 (hypothetical protein FisN_33Lh012 [Fistulifera solaris])

HSP 1 Score: 293.1 bits (749), Expect = 1.900e-75
Identity = 197/526 (37.45%), Postives = 271/526 (51.52%), Query Frame = 0
Query:   74 DTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE---DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRRETRAQLQA-----LLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGE-LMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAA--------GLVESDGLDXXXXXXXXXXXXXXLQALLN-KDHIKRRAKVMDAFRAGES---RVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMRKA 578
            D +LD    T T  + Y  +LP+WLL R + LG+  PT +Q  AL  +L  E   DVVIQA+TG+GKTL +LLP LA ID ++  VQA++VVP+RELGLQVA VAK+L                                      V  + +KI +MS+L+GS+N RQ+AW  AEPP VVIG P  LS++V+ GGI RY+ ++MVV+DEVDACL       QL A     LL K LS +FL  +  E+   A    +                              +L  RQT+  SATIPQH HFIKQCVQ +WT  +P+ V +  GE L+PP L+H Y+VC  +  KLAAL+ F R+  S        +F  + +  E +A         G+   +                 + A+L  +D++ +RA  MDAF   +    RVL +TD AARGLD+  ++HV  +D+P DA+TY+HR G                  +EF L+RLAN L + +R +   +KA
Sbjct:   51 DGALDQ---TDTLLQRYQYQLPSWLLQRCQDLGYIHPTRIQIAALDVLLLDEHKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAILVVPTRELGLQVAKVAKRL--------------------------------------VAASPHKIYIMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFLDKDEVEDTMGALSSTRPKR---------------------------RLHARQTILCSATIPQHKHFIKQCVQNRWTTTEPVLVALQTGEQLLPPTLEHVYMVCRPET-KLAALKRFFRKLLSSPVPFKVLVFAEEQRPLEEMALALAWEAEHGVYWQESTAKAVQDNPTDKPIQAITAVLRYQDNLTQRAAAMDAFTRSDDDIVRVLFSTDLAARGLDVANVTHVIHFDLPPDADTYVHRAGRTGRLGRSGQVLSFVAPEQEFVLNRLANKLSLDLRCVARQKKA 507          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_002290925.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91032.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 282.0 bits (720), Expect = 4.400e-72
Identity = 203/533 (38.09%), Postives = 277/533 (51.97%), Query Frame = 0
Query:  104 SLGFTRPTMVQREALGAIL-----------------DGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQL-SAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTR---------RETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLV---QRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRRE----QSKGRLQACAIFTADDQDAEVIA-------AGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRA------------------------GESRVLVTTDFAARGLDIPRISHVAMYDIP--ADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMR 570
            +LG+  PT++Q   L  +L                    DV+I AQTG+GKTLA+LLPLL+ ID S+ AVQA+VVVP+RELGLQV  VA++L   GRV               XXXXXXXXXXXX          S KI++M LL+GS NTRQ+AW  AEPPH+VIG P  LS +V +GG+R + VK+VV+DEVDACL+R           +   L  LL ++LSP++   +     A + +G  G    +       E  VG+    +  +  +K+     RQT+F SATIPQHNHF+KQCV+  WTLR+PI V V+PGEL+PP L+H Y+VC  K  K+  LR ++++E              IF+   +  E +A        G+V  +G                +  L  +D +  RA  M+ FR                          + R+L++TD AARGLDI  ISHV  +D+P   D +TY+HRGG                  +EF L RLAN L +++R
Sbjct:    3 NLGYVNPTLLQSRVLDILLPTLDTSTSTNESSEQQNQPSDVIIHAQTGSGKTLAYLLPLLSRIDPSRSAVQALVVVPTRELGLQVVRVARRLCGGGRV---DVGVTNDDDNETXXXXXXXXXXXXXXXXXXXXSKSKKIMIMPLLQGSSNTRQRAWAWAEPPHIVIGTPEELSSMVTRGGVRVNSVKIVVVDEVDACLSRGGNGGMSDGGSSSGTLHELLSRHLSPTY---QEVGRVATSVEGSDGRTFQMSTSSDSGETSVGNHDLSSHTMNGFKVYADKYRQTIFASATIPQHNHFMKQCVRNGWTLREPIRVNVSPGELVPPTLKHVYVVCRDKGTKVGGLRRWMKKEIAAXXXXXXXTKMLIFSDPRRPLETLADMLAKDFNGIVWREG----YTPMQENGYDAVISVLRMEDSLGTRAAAMEGFRGPNERDNGAVGGYANQGSDIGKEKRDKLRILLSTDLAARGLDISGISHVINFDLPNDNDGDTYVHRGGRAGRLGKKGQVMSLITADQEFVLERLANRLALELR 525          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: OEU22544.1 (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 276.9 bits (707), Expect = 1.400e-70
Identity = 184/528 (34.85%), Postives = 263/528 (49.81%), Query Frame = 0
Query:   69 SNQLIDTSLDNGTTTGTFAELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGE--DVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGI-RYHQVKMVVIDEVDACLTRR-----------ETRA---QLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQA------LLNKDHIKRRAKVMDAF-RAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLG 573
            S+ L D +L +     +F+ELY + LP WLL + E   +  PT++Q+ +L    D +   +VIQAQTG+GKTL +LLPLL+ ++  + +VQAM+VVP+RELGLQVA VAK+L                                            K +VMSLLEGS   RQ+ W  AE P VVIG P  L  +V  GG+ R   V  VV+DEVDACL              +T+A    L  LL K+LSP+F+                 DE  +I      +D V +  D++ +    K   RQT+F SATIPQH HF+KQC   QWTL +P++V  +PGE +PP L H Y+VC +  +K+A LR  +++  +          +   +  ++I   L  S  +D              +Q+      L  +D + +RA    AF    E R++ TTD AARGLDI  ++H+  +D+P DA+TYLHR G                  +EF L RL+N L + ++ +G
Sbjct:   55 SSYLCDATLSD----KSFSELYSDNLPEWLLEKCEEYNYKCPTLIQQRSLDCFFDDDPNSMVIQAQTGSGKTLTYLLPLLSKLE-DRASVQAMIVVPTRELGLQVAMVAKRL-----------------------------------------VGRKFMVMSLLEGSSLKRQRKWAWAETPQVVIGTPTELLDMVRYGGLPRISSVNTVVVDEVDACLVHTSSLQGGSNNSVDTKALASSLNELLSKFLSPTFI-----------------DEDDII------DDEVITIADDSNKKRKRKFRHRQTIFCSATIPQHRHFLKQCKANQWTLEEPVYVCTSPGEHLPPTLDHAYMVCNSNEKKMATLRNIIKKLNTSSNKILVFFDSTSSRPLDIIGKKLALS--IDNGIFYEDKKTNLEDIQSNPVVSILRFEDSLSQRAGATKAFAERSEFRIMATTDLAARGLDILGVTHIIHFDLPIDADTYLHRSGRAGRLGQKGSVISILNPDQEFVLKRLSNALSVDVKCVG 511          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: GAQ87246.1 (ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidium nitens])

HSP 1 Score: 240.0 bits (611), Expect = 1.900e-59
Identity = 165/496 (33.27%), Postives = 234/496 (47.18%), Query Frame = 0
Query:   87 AELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIF----------TADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDH--IKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGG---XXXXXXXXXXXXXXXXXXEEFALSRLANTLKIK 568
            A L G  +P+WL+ R E LG+  PT  Q EAL   L G D VI AQTG+GKTL +LLP+L+GID  + +VQA+VVVP+RELG+QVA VA+QL AG+                                 T    S KI VM+LL+G+   RQK W+ A+PPH+V+G P  + +++E   +R + +K +V+DE DA      T   L  LL            ++ EA                                          RQT+F SAT+PQHN  + + V+ +W     +HV V P + +P  L H YLVC    +K+ +L+  + R+Q      A  IF          T +    E +A  L E                   LQ LL +++  +++RA ++  FR G  R+LV TD AARGLD+P +SHV  +D+P DA +Y+HR G                     E FAL RL N ++++
Sbjct:  123 ARLCGRSVPDWLIRRAEDLGYGTPTGAQTEALPLALQGRDCVIHAQTGSGKTLTYLLPVLSGIDPKRSSVQAIVVVPTRELGIQVARVARQL-AGK---------------------GKDQVADEEAANTKKLKSGKIQVMALLDGAGGNRQKIWLKADPPHLVVGTPDRIHKMIEYRNLRTNGLKFIVVDEFDAYPAATRTTGSLNKLL-----------TVDSEAG----------------------------------------ARQTIFASATVPQHNRAVTELVKNKWARNDLVHVHVDPIQHVPKFLDHRYLVCEGD-DKIKSLQKLVERDQP----SAAIIFAHDLTERNKRTGETPSVEAVAEALSEGQ--------------PEALQPLLLQENARVQKRASIVQEFREGNRRLLVATDLAARGLDLPEVSHVYNFDLPLDATSYVHRAGRTARKPIAGTKGTVTCLVSSKEVFALKRLLNAIRVE 526          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_024378108.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Physcomitrella patens] >PNR52704.1 hypothetical protein PHYPA_009079 [Physcomitrella patens])

HSP 1 Score: 227.6 bits (579), Expect = 9.800e-56
Identity = 157/493 (31.85%), Postives = 230/493 (46.65%), Query Frame = 0
Query:   87 AELYGERLPNWLLSRVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXL---QALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRG---GXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGV 574
            ++L   ++P ++L + E +G++ PT+VQ+EAL  +L G D ++ AQTG+GKTLA+LLP+ A I  ++ AVQA+VVVP+RELG+QVA VA++L AG+                                P   GT   ++VM+LLEG  N+RQKAW+ AEPP +V+G    ++R++E   +R + V  +VIDEVDA +   +    L  LL +Y  P                                                    QRQT+  SATIPQH  F+  C+Q +W     +H+ V P + MP  L H Y+VC  K ++L AL + L+ +  +      AI   +DQ  +   AG   +                  L     L  + H+  RA  +  FR G   +LV T+ AARGLD+P +SHV  ++ P    +Y+HR    G                  E F L RL N + +K   L V
Sbjct:  118 SKLCMNKVPEYVLRKAEEVGYSVPTLVQQEALPVLLSGRDCILHAQTGSGKTLAYLLPIFAKILPARAAVQAIVVVPTRELGMQVAKVARKL-AGKGGSEEDGK-----------------------APKEKGT---VMVMTLLEGGTNSRQKAWLKAEPPQIVVGTLERIARMIETKNLRTNAVNTIVIDEVDAMMGAAKEGGHLHKLLSEYTRPQ---------------------------------------------------QRQTILASATIPQHRRFLNDCIQNKWVKEDVMHIHVRPEDKMPSYLHHRYVVC-EKDDRLPALLSLLQSDAPR-----AAIIFVNDQSEKAKRAGNTPTTITVADYIAKMKFSSDDALWEPLVLEEESHVNARAATLADFRDGRC-LLVATELAARGLDLPEVSHVYNFEWPPSVTSYIHRAGRTGRQPITEELGTVTSFITPKELFVLRRLENEMMLKFEALKV 525          
BLAST of NO13G02280 vs. NCBI_GenBank
Match: XP_009038460.1 (hypothetical protein AURANDRAFT_54120, partial [Aureococcus anophagefferens] >EGB06709.1 hypothetical protein AURANDRAFT_54120, partial [Aureococcus anophagefferens])

HSP 1 Score: 223.4 bits (568), Expect = 1.900e-54
Identity = 156/472 (33.05%), Postives = 216/472 (45.76%), Query Frame = 0
Query:  107 FTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGIDASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRXXXXXXXXXXXXXXXXXXXXXXXXTIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVVIGNPLALSRLVEQGGIR-YHQVKMVVIDEVDACL--TRRETRAQLQALLGKYLSPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAPWKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQLQHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGLVESDGLDXXXXXXXXXXXXXXLQALLNKDHIKRRAKVMDAFRAGESRVLVTTDFAARGLDIPRISHVAMYDIPADAETYLHRGGXXXXXXXXXXXXXXXXXXEEFALSRLANTLKIKMRRLGVMR 576
            +  PT VQ E +   LDG D +I AQTG+GKTLA+L PL A +DAS+Q  QA+V+VP+RELGLQVA VA++L++                                           ++VMSLL+GS + RQ+AW  AEPPHVV+GN  ++  +   GG+R    V+ VV+DEVDA L   R + RA L A L +                         ET                              RQTVF +A++ Q  H  ++    +W+ + P +V+V   E  P  L H+  V P K  KLA LR  LR  +      A  +F  + +  + IA  L ++DG+                  L  +D +  R + +DA+ AG+  VL+ TD AARGLD PR + V  +D P DA  YLHR G                  E FAL RLAN L++ +  + V R
Sbjct:   38 YATPTAVQAETIPVALDGHDCLIHAQTGSGKTLAYLAPLFARVDASRQTTQAVVIVPTRELGLQVARVARRLASAL---------------------------------PAAPDGKPVMVMSLLDGSSHRRQRAWAWAEPPHVVVGNAKSVHGMAANGGLRCADAVRYVVVDEVDAFLDPARSDDRAALHAFLFR-------------------------ET------------------------------RQTVFATASLEQPRHLAERLASMRWSKKAPSYVRVGAAEATPGSLSHFSAVVPDKGAKLAVLRKMLRDVKRSSTRFAAIVFFDERRPLQAIADKLEQADGV--------------ACAVLDGRDDLSSRKREVDAYTAGDVDVLLCTDLAARGLDAPRTTLVVQFDFPGDATAYLHRAGRAARLGRAGAVLTLLEAREAFALERLANYLRVDVDAVDVSR 407          
The following BLAST results are available for this feature:
BLAST of NO13G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21889.11.300e-17259.47RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
CBN75240.16.700e-8943.88DEAD box helicase [Ectocarpus siliculosus][more]
GAX28710.13.500e-7738.67hypothetical protein FisN_33Hh012 [Fistulifera sol... [more]
XP_002177884.11.300e-7636.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX23124.11.900e-7537.45hypothetical protein FisN_33Lh012 [Fistulifera sol... [more]
XP_002290925.14.400e-7238.09predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU22544.11.400e-7034.85P-loop containing nucleoside triphosphate hydrolas... [more]
GAQ87246.11.900e-5933.27ATP-dependent RNA helicase DDX6/DHH1 [Klebsormidiu... [more]
XP_024378108.19.800e-5631.85DEAD-box ATP-dependent RNA helicase 58, chloroplas... [more]
XP_009038460.11.900e-5433.05hypothetical protein AURANDRAFT_54120, partial [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001669NSK001669Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02280.1NO13G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|112563gene_6784Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100231g3gene8544Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02280.1NO13G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02280 ID=NO13G02280|Name=NO13G02280|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATGGCCCGGCGCCGCTCCTCCACCGCACTCACAAGACCATTCAGAAGACC
CAATCACCATCGGTATCAAACCAATTTCCTTCTTCTCCTGGCCACGATGA
TCACATCCGTGGCAGCTAGACCAACGCCGTCAAAAGCCACCTTTCTTCCT
GTCCTGAACCCCCCCCCGCGACCTCGGGGTGCCCGCCGCCATGCACAACA
CCAATCAAATCAACTAATTGACACGAGTCTGGACAACGGCACGACCACAG
GAACATTCGCCGAGCTCTATGGTGAGCGGCTGCCGAATTGGTTGCTGTCA
CGTGTCGAAAGCTTGGGCTTTACAAGGCCGACGATGGTCCAGCGAGAGGC
GTTGGGGGCTATTTTGGATGGAGAGGACGTGGTGATCCAGGCGCAGACGG
GCACGGGCAAGACACTCGCCTTTCTGTTGCCGTTGCTGGCGGGTATTGAT
GCAAGCAAACAGGCCGTGCAGGCCATGGTGGTGGTTCCGAGCCGAGAATT
GGGGTTGCAGGTGGCAAGCGTGGCCAAGCAGCTATCTGCAGGGCGGGTCT
ATTACCGAGACGAGGAAGTGCAAGACGATGACGATGATGACGTTAACGCC
GACGACGAAGAAGCTGATAGCAGCACCGCCACCATTTTTACTCCGACTGT
CAACGGCACGAGCAACAAGATCCTAGTCATGTCCCTCCTTGAAGGCTCTA
AAAACACCAGGCAAAAAGCCTGGGTGCTGGCCGAGCCGCCACACGTGGTG
ATTGGCAACCCTCTTGCTCTCTCCCGCCTTGTAGAACAAGGCGGTATCCG
TTACCACCAGGTTAAGATGGTTGTTATTGACGAAGTGGATGCCTGCCTCA
CCCGCCGGGAGACCCGAGCGCAGCTACAGGCGCTGCTTGGAAAATACCTG
TCGCCTTCCTTCTTGACCTCCGAGCTAGAAGAAGAGGCGGCATTGGCGGC
TAAGGGAGGTAAAGGGGACGAGACGCTCCTGATCCCTCAGGGTGCTATGA
AGGAAGACGGGGTCGGGAGCGGCGGTGACGAGGCCCGGCAGTTGGCACCT
TGGAAACTGGTGCAGCGGCAAACCGTGTTTGTCAGCGCCACCATCCCCCA
ACACAACCACTTTATCAAGCAATGCGTGCAGCAGCAATGGACCTTACGAC
AGCCTATCCACGTACAAGTCACCCCTGGAGAACTCATGCCCCCTCAGCTC
CAACACTATTACCTCGTTTGCCCCACCAAAGCCGAGAAGCTCGCTGCGCT
TCGAGCGTTCTTGCGAAGGGAGCAGTCGAAAGGCAGGTTGCAGGCATGTG
CAATCTTCACAGCAGATGACCAGGATGCAGAAGTTATCGCCGCAGGGTTA
GTGGAAAGCGATGGGTTGGATGAGGAAGAAGAGGAGGAGGGGGGAAAGAA
GAGGAAGGGTGGGTTGCAGGCTTTGTTGAACAAAGACCACATCAAGCGAC
GGGCTAAGGTGATGGATGCCTTTCGCGCGGGCGAGTCCCGAGTGTTGGTC
ACAACTGACTTTGCGGCACGTGGGTTGGATATTCCACGGATAAGCCATGT
GGCTATGTACGATATCCCCGCGGATGCCGAGACGTACTTGCATAGGGGCG
GGAGGGCGGGGAGGATGGGGAGAGCGGGGTCGGTAACGTCGTTGGTATCG
GAGACGGAGGAGTTCGCGCTATCGCGGCTGGCCAACACGTTGAAGATTAA
GATGAGGCGGCTGGGGGTTATGAGAAAGGCGGGGCGAGGAGAAACGGAAA
GGAAACGGGGAAAGAGGTAG
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protein sequence of NO13G02280.1

>NO13G02280.1-protein ID=NO13G02280.1-protein|Name=NO13G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MARRRSSTALTRPFRRPNHHRYQTNFLLLLATMITSVAARPTPSKATFLP
VLNPPPRPRGARRHAQHQSNQLIDTSLDNGTTTGTFAELYGERLPNWLLS
RVESLGFTRPTMVQREALGAILDGEDVVIQAQTGTGKTLAFLLPLLAGID
ASKQAVQAMVVVPSRELGLQVASVAKQLSAGRVYYRDEEVQDDDDDDVNA
DDEEADSSTATIFTPTVNGTSNKILVMSLLEGSKNTRQKAWVLAEPPHVV
IGNPLALSRLVEQGGIRYHQVKMVVIDEVDACLTRRETRAQLQALLGKYL
SPSFLTSELEEEAALAAKGGKGDETLLIPQGAMKEDGVGSGGDEARQLAP
WKLVQRQTVFVSATIPQHNHFIKQCVQQQWTLRQPIHVQVTPGELMPPQL
QHYYLVCPTKAEKLAALRAFLRREQSKGRLQACAIFTADDQDAEVIAAGL
VESDGLDEEEEEEGGKKRKGGLQALLNKDHIKRRAKVMDAFRAGESRVLV
TTDFAARGLDIPRISHVAMYDIPADAETYLHRGGRAGRMGRAGSVTSLVS
ETEEFALSRLANTLKIKMRRLGVMRKAGRGETERKRGKR*
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Synonyms
Publications