NO13G02220, NO13G02220 (gene) Nannochloropsis oceanica

Overview
NameNO13G02220
Unique NameNO13G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr13:620317..621773 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:620317..621773 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0035434copper ion transmembrane transport
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
The following BLAST results are available for this feature:
BLAST of NO13G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001675NSK001675Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02220.1NO13G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02220.1NO13G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02220 ID=NO13G02220|Name=NO13G02220|organism=Nannochloropsis oceanica|type=gene|length=1457bp
CCCCAAGAAATTTTCGCGGACTCAAATGTTTTTGGACCCAAATCAGCGCA
CACATTCCCTATTGTCGTGTGGATTGAATGATCATCACTTAGCCTGTACT
GGGAGCAGAATGCTGCATGCTTAAAGGTCCACTCCTCTTACATGCACGGT
TGCCGCGGCGGTATGCCAGAACAGTAGACTAAGTAAGAATCTCAAAACCT
CCGCACCCTATATCCCACAGGAACAACAAGGACAGATGGATCACAGTGCT
GGCGGCGGTGGCATGGCAGGCATGGACGACAGCATGCCCCTGGCGATGCC
CATGGCTATGGACCTGACTCTCAAGTGCACCTGCCGCGTTGGCAAGATCT
TCGTATCGGCGTGGGACATTCAGACTTGCGGGACGTACTCTGCGAGTTTG
GCCGTCATCGCCTTGTTCTGCTTCCTGCGGCACCTGCTCATGATGCACAA
GACCAAGCTGATTTTGCGGCTGGCAGAGCAAGATGCAGgtacacatcttt
gaattattgcgcgatcctcatattgagtcacatccagtcacccttccctg
tcctcttctcaaatcctcttctcaaatgtctcctcaccctgtccacagAC
GCAGGCATGAAGCGGACATCCTCGATGGTGGGCGGCGTGTGCTGCAACGT
CAAGCCCGGGTCGCTGTCATCTTCATACGGGTCCACCACTTTCGCAGAGA
GCTCAAACGACGAGGAAAGCCAACAGCTCACGAGAATAAAAAGAGGGACC
TCCGCCACAAACACGAACGCTAAGGGAGAGACTGAATACAGGCCCGCCCA
ATTGCGACACCAACTTTCCGAAGAAGCCTTCGGCAGGCTAGGGAACTCGA
TCAGCCTCCACGCCCGCTTAGTTTTGACGGCGTATTTTGCCTTGCTGAGT
GGCTCGTCTCTCTTGGTGATGCTGCTGGCGATGAGCTTCAATGTCGGCAT
TATTCTGGCAATCTTGGTGGGGGAGGGAGTGGGGCATTTAGTTTTCGCCT
CCGATTTCTTGCACAATCTGGTGGACATTGGGAGTTTCCACTAGATAGAT
GAGGAGAGAGAGGAGAGGAAGGTGGGGAAGGAGCCGGGGATGAGACGCCC
AACGAAGGGAAATACTTGAAGCATACCCCAAAAGCAGAGATTTTGAAATA
TTAGACATGTACAAAAGAGAAGTCAGCACAAATAATGGCGCTGAAAATAT
ATGAATATAGCTATTTAGATTGTGAGGGGTGCTTGAGAGTGTCATTTGAA
GCTGTGTGTGGCATGAAGAGCGAGGCTGGGGGCGTGCCGAGGCAAAAGAC
TGTAGGTGGTGGAACCATCAGGAAATATCAGCATCTCTCACGGGTCAAGC
AGCAGCATATTTCACCCGCTGAGCAGTTGCGGATTGACTCAGTCAAGTAG
ATAAAGCGGATGAGTGGTCAAAATCAAAGTAAAAAGCAACCAGAGTTGGA
AAAAGTA
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protein sequence of NO13G02220.1

>NO13G02220.1-protein ID=NO13G02220.1-protein|Name=NO13G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MDHSAGGGGMAGMDDSMPLAMPMAMDLTLKCTCRVGKIFVSAWDIQTCGT
YSASLAVIALFCFLRHLLMMHKTKLILRLAEQDADAGMKRTSSMVGGVCC
NVKPGSLSSSYGSTTFAESSNDEESQQLTRIKRGTSATNTNAKGETEYRP
AQLRHQLSEEAFGRLGNSISLHARLVLTAYFALLSGSSLLVMLLAMSFNV
GIILAILVGEGVGHLVFASDFLHNLVDIGSFH*
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Synonyms
Publications