NO13G02180, NO13G02180 (gene) Nannochloropsis oceanica

Overview
NameNO13G02180
Unique NameNO13G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length702
Alignment locationchr13:615140..615841 +

Link to JBrowse

Properties
Property NameValue
DescriptionFlagellar associated protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:615140..615841 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010736SHIPPO-rpt
Vocabulary: Cellular Component
TermDefinition
GO:0031514motile cilium
Homology
BLAST of NO13G02180 vs. NCBI_GenBank
Match: EWM21887.1 (flagellar associated protein [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 2.100e-46
Identity = 107/214 (50.00%), Postives = 130/214 (60.75%), Query Frame = 0
Query:    3 SYEAVSPAVQSYGFGCCPRPCLGGGN--EDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYDSACGKQVDSRKQNCSGTRFGTADGPS 215
            SY+ + PA  S+GFG  PR  +   +   DTPGPG Y LKSTL GHVADSRIRS  GFSLR R  FGS   +  ++    PGPG Y+  Q   G L+ NPK R AP+FSFPKG  PR    ++PGPG Y  K+ +GPQ LS++ +PP + F + R   S  S  +   T S         GPG YN  SACGKQVDSRK+N  G RFG A+GPS
Sbjct:   27 SYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSS-------GGGPGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPS 233          
BLAST of NO13G02180 vs. NCBI_GenBank
Match: XP_009040577.1 (hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens] >EGB04662.1 hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens])

HSP 1 Score: 127.5 bits (319), Expect = 5.500e-26
Identity = 82/194 (42.27%), Postives = 103/194 (53.09%), Query Frame = 0
Query:   16 FGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQS-AAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYD-SACGKQVDSRKQNCSGTRF 208
            FG   RP L    E TPG G Y +K+T++G+V DS+I S   FSLRSR  FG+    ++ +  A  PGPG Y   Q       VNPK+ NAP++SFPKGHF +   +L PGPG Y +  ++G Q LSTK N     F +                R    R H DVGPG Y    SAC KQVDSRK+     +F
Sbjct:   95 FGSAIRPRLSEA-EPTPGAGAYSIKTTILGNVPDSKIHSAPQFSLRSREKFGNPMLRALDTETARQPGPGWYTPKQ-------VNPKDDNAPKYSFPKGHFIKDKARLSPGPGAYVIPSSVGKQVLSTKSNNNGMGFGQGE--------------RPPLLRVHNDVGPGEYGVGISACKKQVDSRKKTSGFVKF 266          
BLAST of NO13G02180 vs. NCBI_GenBank
Match: CBN75446.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.2 bits (274), Expect = 9.100e-21
Identity = 81/215 (37.67%), Postives = 104/215 (48.37%), Query Frame = 0
Query:    1 MRSYEAVSPAVQSYGFGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSM-QSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPK--GHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHT-DVGPGSYNYDSACG-KQVDSRKQNCSGTRFGTA 211
            M SY     +    GFG   RP L  G  + PGPG Y+LKST+  +   S IRS   F++R R  FGS    ++ ++    PGPG       H    +VNP+E NAP+++FPK  G   R N    PGPG+Y L   +G Q LSTK               S N        R D     T DVGPG Y+   + G +QVDSR+ N SG +F  A
Sbjct:   42 MDSYNETVRSAPKIGFGTAGRPPLQDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSFTMRGREKFGSPDLKAIDRTCQLEPGPG-------HYKLAIVNPQEENAPKYTFPKDAGAMIRENVVRAPGPGRYNLHPGVGKQVLSTK--------------RSHNGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQVDSRRCNKSGAKFSKA 234          
BLAST of NO13G02180 vs. NCBI_GenBank
Match: XP_012205429.1 (hypothetical protein SPRG_11222 [Saprolegnia parasitica CBS 223.65] >KDO23792.1 hypothetical protein SPRG_11222 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 0
Query:   20 PRPCLGG-----GNED---TPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSF-PKGHFPRGNTKLEPGPGQYQLKEAMGPQAL-STKINPPSTMFARSRSLPSSNSSS 165
            P  C G      G+ D   +PGPG Y++ ++L G    S +R+    S+  R  FG  S S ++SAA+ PGPGDY          +VN KE NAP +S   K   P   TK  PGPG Y   E++  +A+ ST  + P++ F++    P + SS+
Sbjct:   52 PTTCFGSSSRAQGHSDGSKSPGPGAYQVPTSL-GKPVLSTMRTAPACSVAGREKFG--SVSDLKSAASCPGPGDY-------SSQVVNLKEANAPHYSLGKKWTTPAEPTKKSPGPGAYDTPESISSKAVRSTNRSAPASSFSKVNRKPLTESST 196          
The following BLAST results are available for this feature:
BLAST of NO13G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21887.12.100e-4650.00flagellar associated protein [Nannochloropsis gadi... [more]
XP_009040577.15.500e-2642.27hypothetical protein AURANDRAFT_66990 [Aureococcus... [more]
CBN75446.19.100e-2137.67conserved unknown protein [Ectocarpus siliculosus][more]
XP_012205429.13.900e-835.48hypothetical protein SPRG_11222 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02180.1NO13G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100159g11gene8552Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02180.1NO13G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02180 ID=NO13G02180|Name=NO13G02180|organism=Nannochloropsis oceanica|type=gene|length=702bp
ATGCGATCGTATGAGGCCGTGTCACCTGCCGTCCAGTCGTATGGCTTTGG
GTGCTGCCCGAGGCCATGCCTCGGTGGGGGTAATGAAGACACTCCAGGTC
CGGGCACATACCGCCTCAAATCCACACTTATCGGACACGTAGCCGACTCA
AGGATCCGCTCCAACACTGGCTTTTCATTACGGAGTCGCACCACCTTTGG
AAGCGACAGCACTTCGTCCATGCAGTCCGCGGCCGCTACGCCCGGCCCGG
GCGATTACGTTTGCATTCAACAACACGTCGGGTTCTTGATGGTTAATCCC
AAGGAGAGGAATGCGCCACGATTTTCTTTCCCCAAGGGCCATTTTCCACG
TGGCAATACCAAGTTGGAGCCTGGACCCGGGCAATACCAGCTCAAGGAAG
CCATGGGCCCGCAAGCCTTGTCCACCAAGATCAATCCCCCCTCCACCATG
TTCGCCAGGAGCCGCAGCCTTCCCAGCAGCAACAGCAGCAGCAGTATCTG
TAGCACCCGCAGTGACTGCAGACGTCATCATACCGACGTTGGCCCTGGGT
CTTACAATTACGATAGTGCCTGTGGCAAGCAGGTTGATTCGCGGAAGCAA
AACTGTAGTGGGACACGTTTTGGGACTGCCGATGGCCCCTCGCCGCCCAA
ATTACCCACTTTATCCAGGACGACAAAAAGAGGAAGAAGAGCACGGTCAT
GA
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protein sequence of NO13G02180.1

>NO13G02180.1-protein ID=NO13G02180.1-protein|Name=NO13G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MRSYEAVSPAVQSYGFGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADS
RIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNP
KERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTM
FARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYDSACGKQVDSRKQ
NCSGTRFGTADGPSPPKLPTLSRTTKRGRRARS*
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Synonyms
Publications