NO13G02180, NO13G02180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02180 vs. NCBI_GenBank
Match: EWM21887.1 (flagellar associated protein [Nannochloropsis gaditana]) HSP 1 Score: 195.3 bits (495), Expect = 2.100e-46 Identity = 107/214 (50.00%), Postives = 130/214 (60.75%), Query Frame = 0 Query: 3 SYEAVSPAVQSYGFGCCPRPCLGGGN--EDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYDSACGKQVDSRKQNCSGTRFGTADGPS 215 SY+ + PA S+GFG PR + + DTPGPG Y LKSTL GHVADSRIRS GFSLR R FGS + ++ PGPG Y+ Q G L+ NPK R AP+FSFPKG PR ++PGPG Y K+ +GPQ LS++ +PP + F + R S S + T S GPG YN SACGKQVDSRK+N G RFG A+GPS Sbjct: 27 SYKGIFPATPSFGFGSSPRDTIAPSHSGNDTPGPGAYNLKSTLSGHVADSRIRSTNGFSLRGREGFGSKIFTKDRACVDEPGPGAYLSSQSRKGGLLSNPKHRAAPQFSFPKGCSPRNKLSIQPGPGHYHFKDTLGPQVLSSRASPPVSTFGKGRKRQSFTSDLTPDLTSS-------GGGPGFYNAVSACGKQVDSRKRNGGGVRFGKAEGPS 233
BLAST of NO13G02180 vs. NCBI_GenBank
Match: XP_009040577.1 (hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens] >EGB04662.1 hypothetical protein AURANDRAFT_66990 [Aureococcus anophagefferens]) HSP 1 Score: 127.5 bits (319), Expect = 5.500e-26 Identity = 82/194 (42.27%), Postives = 103/194 (53.09%), Query Frame = 0 Query: 16 FGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQS-AAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPKGHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHTDVGPGSYNYD-SACGKQVDSRKQNCSGTRF 208 FG RP L E TPG G Y +K+T++G+V DS+I S FSLRSR FG+ ++ + A PGPG Y Q VNPK+ NAP++SFPKGHF + +L PGPG Y + ++G Q LSTK N F + R R H DVGPG Y SAC KQVDSRK+ +F Sbjct: 95 FGSAIRPRLSEA-EPTPGAGAYSIKTTILGNVPDSKIHSAPQFSLRSREKFGNPMLRALDTETARQPGPGWYTPKQ-------VNPKDDNAPKYSFPKGHFIKDKARLSPGPGAYVIPSSVGKQVLSTKSNNNGMGFGQGE--------------RPPLLRVHNDVGPGEYGVGISACKKQVDSRKKTSGFVKF 266
BLAST of NO13G02180 vs. NCBI_GenBank
Match: CBN75446.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 110.2 bits (274), Expect = 9.100e-21 Identity = 81/215 (37.67%), Postives = 104/215 (48.37%), Query Frame = 0 Query: 1 MRSYEAVSPAVQSYGFGCCPRPCLGGGNEDTPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSM-QSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSFPK--GHFPRGNTKLEPGPGQYQLKEAMGPQALSTKINPPSTMFARSRSLPSSNSSSSICSTRSDCRRHHT-DVGPGSYNYDSACG-KQVDSRKQNCSGTRFGTA 211 M SY + GFG RP L G + PGPG Y+LKST+ + S IRS F++R R FGS ++ ++ PGPG H +VNP+E NAP+++FPK G R N PGPG+Y L +G Q LSTK S N R D T DVGPG Y+ + G +QVDSR+ N SG +F A Sbjct: 42 MDSYNETVRSAPKIGFGTAGRPPLQDGGAEAPGPGAYQLKSTMFVN-PSSMIRSPPSFTMRGREKFGSPDLKAIDRTCQLEPGPG-------HYKLAIVNPQEENAPKYTFPKDAGAMIRENVVRAPGPGRYNLHPGVGKQVLSTK--------------RSHNGVGFGTGNRPDLLVQSTADVGPGEYSIPGSTGERQVDSRRCNKSGAKFSKA 234
BLAST of NO13G02180 vs. NCBI_GenBank
Match: XP_012205429.1 (hypothetical protein SPRG_11222 [Saprolegnia parasitica CBS 223.65] >KDO23792.1 hypothetical protein SPRG_11222 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 68.2 bits (165), Expect = 3.900e-8 Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 0 Query: 20 PRPCLGG-----GNED---TPGPGTYRLKSTLIGHVADSRIRSNTGFSLRSRTTFGSDSTSSMQSAAATPGPGDYVCIQQHVGFLMVNPKERNAPRFSF-PKGHFPRGNTKLEPGPGQYQLKEAMGPQAL-STKINPPSTMFARSRSLPSSNSSS 165 P C G G+ D +PGPG Y++ ++L G S +R+ S+ R FG S S ++SAA+ PGPGDY +VN KE NAP +S K P TK PGPG Y E++ +A+ ST + P++ F++ P + SS+ Sbjct: 52 PTTCFGSSSRAQGHSDGSKSPGPGAYQVPTSL-GKPVLSTMRTAPACSVAGREKFG--SVSDLKSAASCPGPGDY-------SSQVVNLKEANAPHYSLGKKWTTPAEPTKKSPGPGAYDTPESISSKAVRSTNRSAPASSFSKVNRKPLTESST 196 The following BLAST results are available for this feature:
BLAST of NO13G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02180 ID=NO13G02180|Name=NO13G02180|organism=Nannochloropsis oceanica|type=gene|length=702bpback to top protein sequence of NO13G02180.1 >NO13G02180.1-protein ID=NO13G02180.1-protein|Name=NO13G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bpback to top Synonyms
Publications
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