NO13G02130, NO13G02130 (gene) Nannochloropsis oceanica

Overview
NameNO13G02130
Unique NameNO13G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr13:604713..605918 +

Link to JBrowse

Properties
Property NameValue
Description60S acidic ribosomal protein family
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:604713..605918 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Homology
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: ODV90965.1 (hypothetical protein CANCADRAFT_113993 [Tortispora caseinolytica NRRL Y-17796])

HSP 1 Score: 67.0 bits (162), Expect = 4.300e-8
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M  +A++LLL  AGK+P A DI+A++ S G E D+A++E L+KE+ GK V+EL+ EG +KL +V
Sbjct:    1 MKYIAAYLLLTSAGKEPTADDISAVLGSVGAEVDQARIETLLKEVSGKSVDELIAEGSEKLATV 64
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: GAX97033.1 (tubulin-specific chaperone B, putative [Pythium insidiosum])

HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGKD-PKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSVSM 67
            M  VA++LL  L G D P AADI A+++S GGE D AK ELL+KE+EGK+++E+++ GK KL +VS+
Sbjct:    1 MRHVAAYLLCVLGGNDAPSAADIEAVVTSFGGEFDSAKAELLLKELEGKNIDEVIEAGKAKLATVSV 67
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: KFK32382.1 (hypothetical protein AALP_AA6G233900 [Arabis alpina])

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-7
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M VVA+FLL  L GK  P + DI A++ S G E+++A++ELL+KE++GKDV EL+  G++KL SV
Sbjct:    1 MKVVAAFLLAVLGGKASPTSGDIKAILGSVGAESEDAQIELLLKEVKGKDVAELIAAGREKLASV 65
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: XP_010520675.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like, partial [Tarenaya hassleriana])

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-7
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M V+A+FLL  L GK  P AADI  ++ S G E DE  +ELL+KE+ GKD+ EL+  G++KL SV
Sbjct:    1 MKVIAAFLLAVLGGKASPSAADIKDILGSVGAEVDEESIELLLKEVSGKDITELIASGREKLASV 65
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: OQS01751.1 (ribosomal protein [Achlya hypogyna])

HSP 1 Score: 63.9 bits (154), Expect = 3.700e-7
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSVSM 67
            M  VA+FLL  L G   P  AD++A+I++ GGEADE ++ LL+KE+EGKD+ E++ EG+ KL +VS+
Sbjct:    1 MRHVAAFLLCVLGGNATPSVADVSAVITAVGGEADEERLALLIKELEGKDIAEVIAEGQKKLSTVSI 67
The following BLAST results are available for this feature:
BLAST of NO13G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
ODV90965.14.300e-850.00hypothetical protein CANCADRAFT_113993 [Tortispora... [more]
GAX97033.17.400e-853.73tubulin-specific chaperone B, putative [Pythium in... [more]
KFK32382.12.800e-752.31hypothetical protein AALP_AA6G233900 [Arabis alpin... [more]
XP_010520675.12.800e-752.31PREDICTED: 60S acidic ribosomal protein P2-4-like,... [more]
OQS01751.13.700e-750.75ribosomal protein [Achlya hypogyna][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001682NSK001682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02130.1NO13G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02130.2NO13G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672246gene_6798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02130.1NO13G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02130.2NO13G02130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02130 ID=NO13G02130|Name=NO13G02130|organism=Nannochloropsis oceanica|type=gene|length=1206bp
CCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGAAGATTGCGAGACAAAA
AGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGCGATTGCGGTATTGCAT
GGACATGGCCAGCAAGGACGTGTTTAGGATTCTGCGAAACAAGGCCAGCT
CCTGAGGCTCATTCTATATCATCCTGTGGCTGGTTCTCCTCTGCTTTCCA
TGTCGCGTGCATGCCTGACTCTGACTAGATCAATGGCCAGACCATACCAC
ACAGACATGACATCTCTTAGGTCTAGGAGAAAAGCAGCGTAAGACTGAGG
CCTTCACAAGCTCGTCCATCTGGACTCTTTCATCGACCGTGCGCCCACCA
TGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCCTTACCCGACAACACCT
ATGTATCATATATCTCACAGCCAAAACCATGAACGTTGTAGCTTCCTTCT
TGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGCCGCAGACATCACTGCC
CTTATTAGTTCTACCGGTGGGGAGGCGGATGAGGCCAAGGTGGAGCTTTT
GATGAAGGAGATAGAGGGCAAGGACGTAGAGGAGCTGCTGAAGGAGGGCA
AGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGGTGGGGGTGGGGGTGGG
GTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCACCGCCTGCTGCGGTAAA
Ggtgggtgcttggttgggtcagggaagagggaatgcagaagcgacgagca
cgtgtcgcccatcttgcgttcttgctaccgtgtcatcatgctcgcttttt
aaaccctctacaccatcttactctatatctatccacagGAGGAGAAGGAG
GAGGAAGCGGACCTGGGCGGGGCCATGGACATGTTTGGGgtaagtgaatg
agcggggggaaatggttgactgagtttcctctttctttgccgtcctttct
cttttttcctgaccgttcgtatgtggtgtggcgatgtcctttgacacaac
actcgtttccctctccctcttgtttttctcttccttctcagGGCGGCGGC
GATGGATACTAAATTCAGCGTGGCCGGATGATCGGAAGGGATTTTCCAGC
AGGCTTGAGACCGGAAGAGGGGGAAAAAAGTTATGCCGTTCTAATCGTGG
GAAGGAGAGTAGAGCTTAGTCCAGGCAACTTGGAAAAGTTAACTAATATT
TCCTGG
back to top

protein sequence of NO13G02130.1

>NO13G02130.1-protein ID=NO13G02130.1-protein|Name=NO13G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGGGGDGY*
back to top

protein sequence of NO13G02130.2

>NO13G02130.2-protein ID=NO13G02130.2-protein|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGVSE*
back to top
Synonyms
Publications