NO13G02130, NO13G02130 (gene) Nannochloropsis oceanica

Overview
NameNO13G02130
Unique NameNO13G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr13:604713..605918 +

Link to JBrowse

Properties
Property NameValue
Description60S acidic ribosomal protein family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:604713..605918 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Homology
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: ODV90965.1 (hypothetical protein CANCADRAFT_113993 [Tortispora caseinolytica NRRL Y-17796])

HSP 1 Score: 67.0 bits (162), Expect = 4.300e-8
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M  +A++LLL  AGK+P A DI+A++ S G E D+A++E L+KE+ GK V+EL+ EG +KL +V
Sbjct:    1 MKYIAAYLLLTSAGKEPTADDISAVLGSVGAEVDQARIETLLKEVSGKSVDELIAEGSEKLATV 64
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BLAST of NO13G02130 vs. NCBI_GenBank
Match: GAX97033.1 (tubulin-specific chaperone B, putative [Pythium insidiosum])

HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGKD-PKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSVSM 67
            M  VA++LL  L G D P AADI A+++S GGE D AK ELL+KE+EGK+++E+++ GK KL +VS+
Sbjct:    1 MRHVAAYLLCVLGGNDAPSAADIEAVVTSFGGEFDSAKAELLLKELEGKNIDEVIEAGKAKLATVSV 67
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BLAST of NO13G02130 vs. NCBI_GenBank
Match: KFK32382.1 (hypothetical protein AALP_AA6G233900 [Arabis alpina])

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-7
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M VVA+FLL  L GK  P + DI A++ S G E+++A++ELL+KE++GKDV EL+  G++KL SV
Sbjct:    1 MKVVAAFLLAVLGGKASPTSGDIKAILGSVGAESEDAQIELLLKEVKGKDVAELIAAGREKLASV 65
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BLAST of NO13G02130 vs. NCBI_GenBank
Match: XP_010520675.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like, partial [Tarenaya hassleriana])

HSP 1 Score: 64.3 bits (155), Expect = 2.800e-7
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSV 65
            M V+A+FLL  L GK  P AADI  ++ S G E DE  +ELL+KE+ GKD+ EL+  G++KL SV
Sbjct:    1 MKVIAAFLLAVLGGKASPSAADIKDILGSVGAEVDEESIELLLKEVSGKDITELIASGREKLASV 65
[Close]
BLAST of NO13G02130 vs. NCBI_GenBank
Match: OQS01751.1 (ribosomal protein [Achlya hypogyna])

HSP 1 Score: 63.9 bits (154), Expect = 3.700e-7
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 0 
Query:    1 MNVVASFLLLKLAGK-DPKAADITALISSTGGEADEAKVELLMKEIEGKDVEELLKEGKDKLKSVSM 67
            M  VA+FLL  L G   P  AD++A+I++ GGEADE ++ LL+KE+EGKD+ E++ EG+ KL +VS+
Sbjct:    1 MRHVAAFLLCVLGGNATPSVADVSAVITAVGGEADEERLALLIKELEGKDIAEVIAEGQKKLSTVSI 67
The following BLAST results are available for this feature:
BLAST of NO13G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
ODV90965.14.300e-850.00hypothetical protein CANCADRAFT_113993 [Tortispora... [more]
GAX97033.17.400e-853.73tubulin-specific chaperone B, putative [Pythium in... [more]
KFK32382.12.800e-752.31hypothetical protein AALP_AA6G233900 [Arabis alpin... [more]
XP_010520675.12.800e-752.31PREDICTED: 60S acidic ribosomal protein P2-4-like,... [more]
OQS01751.13.700e-750.75ribosomal protein [Achlya hypogyna][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001682NSK001682Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02130.1NO13G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02130.2NO13G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672246gene_6798Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02130.1NO13G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02130.2NO13G02130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02130 ID=NO13G02130|Name=NO13G02130|organism=Nannochloropsis oceanica|type=gene|length=1206bp
CCGTCCGCGGGCCTGGAGCACCTGGAATGGAGGAAGATTGCGAGACAAAA
AGTAAGCGAGCAGCTATCTAGGGGGTGAGAATGCGATTGCGGTATTGCAT
GGACATGGCCAGCAAGGACGTGTTTAGGATTCTGCGAAACAAGGCCAGCT
CCTGAGGCTCATTCTATATCATCCTGTGGCTGGTTCTCCTCTGCTTTCCA
TGTCGCGTGCATGCCTGACTCTGACTAGATCAATGGCCAGACCATACCAC
ACAGACATGACATCTCTTAGGTCTAGGAGAAAAGCAGCGTAAGACTGAGG
CCTTCACAAGCTCGTCCATCTGGACTCTTTCATCGACCGTGCGCCCACCA
TGGCGCAAAGGAAGAAAGCAGCGTCTCACTTTCCTTACCCGACAACACCT
ATGTATCATATATCTCACAGCCAAAACCATGAACGTTGTAGCTTCCTTCT
TGCTTCTCAAGCTCGCGGGGAAGGATCCCAAGGCCGCAGACATCACTGCC
CTTATTAGTTCTACCGGTGGGGAGGCGGATGAGGCCAAGGTGGAGCTTTT
GATGAAGGAGATAGAGGGCAAGGACGTAGAGGAGCTGCTGAAGGAGGGCA
AGGACAAGCTTAAGAGCGTCTCTATGGGCGGGGGTGGGGGTGGGGGTGGG
GTTGCGGCCCCGGCGGCTGCGGCAGCTGGTGCACCGCCTGCTGCGGTAAA
Ggtgggtgcttggttgggtcagggaagagggaatgcagaagcgacgagca
cgtgtcgcccatcttgcgttcttgctaccgtgtcatcatgctcgcttttt
aaaccctctacaccatcttactctatatctatccacagGAGGAGAAGGAG
GAGGAAGCGGACCTGGGCGGGGCCATGGACATGTTTGGGgtaagtgaatg
agcggggggaaatggttgactgagtttcctctttctttgccgtcctttct
cttttttcctgaccgttcgtatgtggtgtggcgatgtcctttgacacaac
actcgtttccctctccctcttgtttttctcttccttctcagGGCGGCGGC
GATGGATACTAAATTCAGCGTGGCCGGATGATCGGAAGGGATTTTCCAGC
AGGCTTGAGACCGGAAGAGGGGGAAAAAAGTTATGCCGTTCTAATCGTGG
GAAGGAGAGTAGAGCTTAGTCCAGGCAACTTGGAAAAGTTAACTAATATT
TCCTGG
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protein sequence of NO13G02130.1

>NO13G02130.1-protein ID=NO13G02130.1-protein|Name=NO13G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGGGGDGY*
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protein sequence of NO13G02130.2

>NO13G02130.2-protein ID=NO13G02130.2-protein|Name=NO13G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MNVVASFLLLKLAGKDPKAADITALISSTGGEADEAKVELLMKEIEGKDV
EELLKEGKDKLKSVSMGGGGGGGGVAAPAAAAAGAPPAAVKEEKEEEADL
GGAMDMFGVSE*
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Synonyms
Publications