NO13G02060, NO13G02060 (gene) Nannochloropsis oceanica

Overview
NameNO13G02060
Unique NameNO13G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr13:584117..584593 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:584117..584593 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO13G02060 vs. NCBI_GenBank
Match: EWM21871.1 (hypothetical protein Naga_100169g6 [Nannochloropsis gaditana])

HSP 1 Score: 151.8 bits (382), Expect = 1.800e-33
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 0 
Query:   35 PAGKCLSLAVPDSLRVGELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGG----TEGSDLTYCHLPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPVFVLPFFCL 159
            P G+C  L V   +RV +LK+Q++   G+AVE+QYL+++CK+LQD   LA Y LG     ++ +  TY  +P V++G+RQRGGCFIVTFT+L+ILFFATLCAP TCGTSL LYLFLLPPVF+LPFFCL
Sbjct:   36 PGGQCYPLNVQGDMRVQDLKAQVATAIGVAVEEQYLLHRCKILQDHEALASYDLGTQHHLSKKAMATY-QMPTVEVGIRQRGGCFIVTFTLLTILFFATLCAPLTCGTSLCLYLFLLPPVFILPFFCL 162
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BLAST of NO13G02060 vs. NCBI_GenBank
Match: XP_005855653.1 (ubiquitin domain containing protein [Nannochloropsis gaditana CCMP526] >EKU20701.1 ubiquitin domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.4 bits (381), Expect = 2.400e-33
Identity = 77/128 (60.16%), Postives = 99/128 (77.34%), Query Frame = 0 
Query:   35 PAGKCLSLAVPDSLRVGELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGG----TEGSDLTYCHLPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPVFVLPFFCL 159
            P G+C  L V   +RV +LK+Q++   G+AVE+QYL+++CK+LQD   LA Y LG     ++ +  TY  +P V++G+RQRGGCFIVTFT+L+ILFFATLCAP TCGTSL LYLFLLPPVF+LPFFCL
Sbjct:   36 PGGQCYPLNVQGDMRVQDLKAQVATAIGVAVEEQYLLHRCKILQDHEALASYDLGTQHHLSKKAMATY-QVPTVEVGIRQRGGCFIVTFTLLTILFFATLCAPLTCGTSLCLYLFLLPPVFILPFFCL 162
The following BLAST results are available for this feature:
BLAST of NO13G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21871.11.800e-3360.16hypothetical protein Naga_100169g6 [Nannochloropsi... [more]
XP_005855653.12.400e-3360.16ubiquitin domain containing protein [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001690NSK001690Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02060.1NO13G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596383gene_6805Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100169g6gene8566Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02060.1NO13G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02060 ID=NO13G02060|Name=NO13G02060|organism=Nannochloropsis oceanica|type=gene|length=477bp
ATGATGCCATCTACCCGCCGCGGGGAGGAGGAAGGGGAGAGCGCCCAGAA
GCAGCGGCGGCAGCAGCAGCAGCAGCAGACAACGAACTTGCTGGTCCGAA
GGCCCGCTGGGAAATGCCTGTCTTTAGCGGTGCCGGACAGCCTGCGAGTT
GGGGAACTCAAGTCTCAGCTCTCATTGACCACGGGTATTGCCGTAGAAGA
CCAGTACTTGATGTATCAGTGCAAGCTGCTGCAGGACTCTGCAACTTTGG
CGCTCTATGGTTTGGGCGGGACCGAGGGGTCAGATCTTACATACTGTCAC
CTCCCCATGGTGGATATGGGGGTGCGCCAACGTGGGGGATGTTTCATTGT
GACCTTCACAATTTTGAGCATTCTCTTCTTCGCCACGCTATGTGCGCCAT
TTACGTGTGGTACTTCTCTCTTTCTTTACTTGTTCCTTTTGCCGCCTGTA
TTTGTATTGCCTTTTTTCTGTTTGTAG
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protein sequence of NO13G02060.1

>NO13G02060.1-protein ID=NO13G02060.1-protein|Name=NO13G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MMPSTRRGEEEGESAQKQRRQQQQQQTTNLLVRRPAGKCLSLAVPDSLRV
GELKSQLSLTTGIAVEDQYLMYQCKLLQDSATLALYGLGGTEGSDLTYCH
LPMVDMGVRQRGGCFIVTFTILSILFFATLCAPFTCGTSLFLYLFLLPPV
FVLPFFCL*
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Synonyms
Publications