NO13G02050, NO13G02050 (gene) Nannochloropsis oceanica

Overview
NameNO13G02050
Unique NameNO13G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length750
Alignment locationchr13:582599..583348 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:582599..583348 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G02050 vs. NCBI_GenBank
Match: EWM21867.1 (hypothetical protein Naga_100169g7 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 1.100e-52
Identity = 104/127 (81.89%), Postives = 118/127 (92.91%), Query Frame = 0 
Query:    1 MYRTGRLSYIYAKKWEAFDRKYAVLRKMEALQKFSLKKWMEVEEAEKKYEVRYRLTSFLKAGYNGAVDGTAKLFNAKDRKDLVKKLPRPFRLLFMSKAQRKAEDRRRVTVRRFVGLQNGRPVVEVED 128
            MY+TGRLSY+YAKKWEAFDRKYAV +KMEALQ  SLKKW E +EAE+KYEVRYRLT+FLKAGYNG VD TA LFNAKDRK+LV+KLP+PFRLLFMSKAQR+AE+RRRVTVRRFVGL+ GRP+VEV+D
Sbjct:  259 MYKTGRLSYVYAKKWEAFDRKYAVTKKMEALQTLSLKKWREAQEAERKYEVRYRLTAFLKAGYNGVVDTTAALFNAKDRKELVRKLPKPFRLLFMSKAQRRAEERRRVTVRRFVGLREGRPIVEVQD 385
The following BLAST results are available for this feature:
BLAST of NO13G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21867.11.100e-5281.89hypothetical protein Naga_100169g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02050.1NO13G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02050.1NO13G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02050 ID=NO13G02050|Name=NO13G02050|organism=Nannochloropsis oceanica|type=gene|length=750bp
ATGTACCGGACGGGCAGGTTGAGCTATATTTATGCGAAGAAATGGGAGGC
ATTCGATAGAAAGTATGCGGTGCTCAGGAAGATGGAAGCGTTGCAGAAGT
TCTCATTGAAAAAATGGATGGAGGTGGAGGAGGCGGAGAAGAAATATGAA
GTACGGTATCGATTGACCTCATTTCTGAAGGCCGGGTATAATGGAGCGGT
GGATGGGACGGCAAAGCTCTTTAACGCCAAGGATAGGAAGGATCTGGTGA
AGAAATTGCCGgtaggtctatctggcgaggggaagggagtgattgaaaaa
gagggaggggaaagagggatggatctgtatttacgtagattttgaacata
cgcagtctgttgcgggcagtggaacgagtttgtttgtatcgcgtctttca
caagcgtccctgggggtgtagtcgcgcctgcatctatgtatgttgtccct
gacatgtcatactctccctcatcctcctttccttctccaccacgcacacc
tcccaccctcctttcctctctttacgtacacaatccccctcattacacac
ccttctctcacacacacttacacacacacacacacacggcccccccccac
acacacgcacattctccttttcagAGACCATTCCGCCTCCTGTTCATGTC
CAAGGCGCAACGCAAGGCCGAAGACCGGCGCCGCGTGACTGTGCGGCGTT
TCGTGGGACTGCAGAACGGCAGACCCGTCGTGGAAGTAGAGGATGGTTGA
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protein sequence of NO13G02050.1

>NO13G02050.1-protein ID=NO13G02050.1-protein|Name=NO13G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MYRTGRLSYIYAKKWEAFDRKYAVLRKMEALQKFSLKKWMEVEEAEKKYE
VRYRLTSFLKAGYNGAVDGTAKLFNAKDRKDLVKKLPRPFRLLFMSKAQR
KAEDRRRVTVRRFVGLQNGRPVVEVEDG*
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Synonyms
Publications