NO13G01980, NO13G01980 (gene) Nannochloropsis oceanica

Overview
NameNO13G01980
Unique NameNO13G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr13:568721..569614 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:568721..569614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G01980 vs. NCBI_GenBank
Match: EWM21858.1 (hypothetical protein Naga_100169g12 [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 3.000e-94
Identity = 177/246 (71.95%), Postives = 204/246 (82.93%), Query Frame = 0 
Query:   13 DSDDGISSSSSEVRHRTVGEVEVQVYRKVLPRAAINLLMKGEQPLAKNTNSSISSRSMSSSIRTARNPWPGVNYLIQTLFESEHATQVKHPYIAEISSRCDSGGPPQRLDLRLTSSGVQCLLTPTAILGVEAIIFSLKEALQFAGKVQWDTHLVLVLPGAPEQKFHVDSSRSWFYFTLIFPLSKDPPKAGKTEFWDK-KDQPVVPVERGDVLVFDGRRKHRGSANATSRHVRVFLYIAVYSGTDWN 258
            D D  +  S S  RHRT GEVEVQV+R+VL R  ++LL+KGE     ++ + ISSR  S     ARNPWPGVN LI+TL ES HATQVKHPYIAEISSRCDS GPPQRLDLRL+SSGV+ LL+  AI  VEAI+F L+ AL+F GKV WD+H+V+VLPGAPEQ++HVDSSRSWFYFTLIFPLSKDPP+AG+TEFW+K +DQP +PVERGDVLVFDG+RKHRGSANAT RHVRVFLYIAVYSGTDWN
Sbjct:  130 DEDKRVVCSGSLKRHRTTGEVEVQVFRRVLSRDTVDLLLKGE---LFSSAAPISSRRAS---HCARNPWPGVNNLIKTLLESTHATQVKHPYIAEISSRCDSTGPPQRLDLRLSSSGVRSLLSDEAIQAVEAIVFGLRSALKFTGKVHWDSHIVVVLPGAPEQRYHVDSSRSWFYFTLIFPLSKDPPRAGRTEFWNKERDQPSMPVERGDVLVFDGKRKHRGSANATHRHVRVFLYIAVYSGTDWN 369
The following BLAST results are available for this feature:
BLAST of NO13G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21858.13.000e-9471.95hypothetical protein Naga_100169g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001698NSK001698Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01980.1NO13G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100169g12gene8572Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01980.1NO13G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01980 ID=NO13G01980|Name=NO13G01980|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGAGGCACAAGATCGCCGCTTGCAGTGAGGACACAGACTCCGATGATGG
AATCAGCAGCAGCAGCAGCGAGGTCCGGCATCGCACAGTGGGCGAGGTGG
AAGTGCAAGTATACCGAAAAGTCCTGCCCCGCGCGGCCATCAACTTGCTC
ATGAAAGGCGAACAACCCTTGGCAAAGAACACGAATAGCAGCATCAGCAG
gtgtgtcttggaaggatagacgtggagtgaacgcgacgaatgacggggaa
aagaacgagaggcagagttgatagaaatcccatcgtactcacaacttacc
acccatatcttctttcacagCCGAAGCATGAGCAGCAGCATCCGTACTGC
GCGAAACCCTTGGCCCGGGGTCAACTATCTCATTCAAACGCTTTTTGAGT
CCGAACATGCCACCCAAGTCAAGCATCCTTACATCGCTGAAATCTCCTCT
CGGTGCGACAGCGGAGGCCCTCCCCAACGTCTCGATCTCCGCCTTACCTC
TTCAGGGGTCCAATGCCTTTTGACGCCCACAGCTATTCTAGGAGTGGAAG
CCATTATTTTCAGCCTGAAGGAAGCCCTCCAATTTGCCGGGAAAGTGCAA
TGGGATACGCACCTTGTCCTCGTCTTGCCCGGAGCACCGGAACAGAAATT
TCACGTCGACTCGTCGCGGTCGTGGTTTTATTTTACTCTTATTTTCCCCT
TGTCCAAAGATCCACCAAAGGCAGGGAAGACGGAATTTTGGGACAAGAAG
GACCAGCCGGTGGTGCCGGTGGAAAGAGGAGACGTGCTTGTCTTTGATGG
GCGGAGGAAGCATAGGGGATCTGCTAATGCGACGTCGAGGCATGTGAGGG
TATTTTTGTATATTGCTGTGTATTCTGGGACTGATTGGAATTAG
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protein sequence of NO13G01980.1

>NO13G01980.1-protein ID=NO13G01980.1-protein|Name=NO13G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MRHKIAACSEDTDSDDGISSSSSEVRHRTVGEVEVQVYRKVLPRAAINLL
MKGEQPLAKNTNSSISSRSMSSSIRTARNPWPGVNYLIQTLFESEHATQV
KHPYIAEISSRCDSGGPPQRLDLRLTSSGVQCLLTPTAILGVEAIIFSLK
EALQFAGKVQWDTHLVLVLPGAPEQKFHVDSSRSWFYFTLIFPLSKDPPK
AGKTEFWDKKDQPVVPVERGDVLVFDGRRKHRGSANATSRHVRVFLYIAV
YSGTDWN*
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Synonyms
Publications