NO13G01940, NO13G01940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01940 vs. NCBI_GenBank
Match: EWM21872.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana]) HSP 1 Score: 332.0 bits (850), Expect = 7.300e-87 Identity = 423/1178 (35.91%), Postives = 509/1178 (43.21%), Query Frame = 0 Query: 1 MPPQRNGDLLGPGPTARIVGDEGEIEGXXXXXXXXXXXXXKVHGTNGCQYMLNEDWPRRGDATGDTYRCIQRGPAGDESVVAIKVARSTLD-------------NSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATKSGMLCPPAYTIAMVTEFGGLKAMPSARFLVTVPVCWKTLDARVKGAERGYMETYTAEQALLWSWQIVRGLWTLAEADIGFRSFSLRNVMLTHPNGEVRLAGFDALLSSLEDKDMMEMGDGRMKDSRDGMWAVGRALHMTLTCSTDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMLETAKRRSRWLMDASSPFPSSSSSGSGSVCPLLAAVPAAVRPVVRGLLADKPSHALPLGLALDCLAG-LVGEDVGTEAVLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDLGGREDEGLRALVEANLDLGRTWEGRGKGYKAIELYWDAVALVGGESGGQGGLQQGWKRKVEKDALTRIADLYQEKGNHSKAKDVWWRLVKMHQVEVEACTGGAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAADGLANVRVRLAASLRILGKMKEALAQLNTAVHDLDKVGAGQESSMVGVLTEKAALLLESKDYTRALDMYEDALERRRKSVPRQDPELASLLVSMAGVYAEKGDTDVALGMLIQAYKQMATSPDSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSRPTRRQGPGAGKELLLMANALERIGKLFIVKNQLDDALMCYKAAHERKATALARAHPAIAYSLACMAGIHEKRGDHRAAATMHARALEIRRAVLPPTSLDLASSLFGLANAHQRLRSSKSALSAYEEVETIWRI----NAHGTNNLVGLGDCLVNMSRPLKALGRETEAVAKLRDAGEVYFSAGLSKADVRVQTVISNLNTLKAYGQSKLFGETLISSRSSSRRRRSHPARLKAEVTNRGDVSIHHAHSSTTLGAPSQRLAQQPLPAKSNSFPILASQSSSMKCKSKGDSRPRGVEEAAGQNQQRCSI 1161 MPP +G LLGP + E KV G NG +YML+EDWPRRGDATGDTYRCI+R G ES VAIKVA+ +L + ++T+ CPPA+T+ +VTEFGGLK++PS RFLVT PVCWKTLDAR+KGAERGYME Y+ E+ PNG+VRLAGFD LLS E +G + DSR G+WAVGR LHMTLT STDR RR LA +AG +VGED+ E LARXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + E R + EA LDLG+ WE RGKGYKA ELY DAVA++ +GGQ L WK K+E + RIA+LYQ +G H+KAK+V RLVK+H +E+E+C GG GR XXXXXXXXXXXXXXX EA + LANVRVRLAAS+R LG+ EALAQLNTA +L + GAG++ SMV VLT KA L E ++Y ++MA + + A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RR G+EL++MA ALERI ++F K QLDDALMC+KAAHERK+ ALARAHP ++GLGD LVNMSRPLK+LGR+ EA+AKLRDA E Y +AGL D R++TV NL L + + ET + S P R + + R ++ + HA SS + LP+KS + S +S + G S PR E+ Q +Q+CSI Sbjct: 1 MPPLPSGGLLGPASQFTHTTETTECR-EGVAGTGVFGEGLKVRGPNGAEYMLSEDWPRRGDATGDTYRCIRRNKDGTESTVAIKVAKCSLHDVFSSAVSQESTISVSAMSSPSSKLAAWNQEVRLLRRLALSAGTNQNCHRVDGCVEDGAAKPLDVSDAASSTRRNACCPPAHTVELVTEFGGLKSLPSMRFLVTTPVCWKTLDARIKGAERGYMEAYSREE----------------------------------PNGDVRLAGFDVLLSD-------EGEEGEVPDSRRGLWAVGRVLHMTLTGSTDR-----------------------------------EDDAYYYRVGRRD---------------------------------------------------LATAAVAGEMVGEDLKKEPALARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWGRGSEVG----------------------------------------------ESEANRGEVSREMAEACLDLGQEWERRGKGYKAAELYRDAVAML---AGGQEKLL--WKVKMEAEGWGRIAELYQGRGQHAKAKEVLTRLVKLHAMELESCRGGGGR------------EGXXXXXXXXXXXXXXXPRQQEEAWRTAIGRQIQEEACERLANVRVRLAASMRELGETTEALAQLNTAEQELRRAGAGEDLSMVHVLTGKAELYCEREEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRMAEAKEPA------------FGKSGAEGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRR-----GRELMVMAGALERIAQIFTSKKQLDDALMCHKAAHERKSAALARAHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGETAPGAMLGLGDVLVNMSRPLKSLGRDLEAMAKLRDARETYLAAGLPMTDTRLKTVAENLKVLGMHLHKNI--ETATEGSGWAGGSASLP-RTRRGLVGREELLVRHAASSAS--------GPDWLPSKSRNASAPPSMKASKDGSTGGQSVPR--SESLDQKRQQCSI 957
BLAST of NO13G01940 vs. NCBI_GenBank
Match: XP_005855656.1 (hypothetical protein NGA_0622800 [Nannochloropsis gaditana CCMP526] >EKU20704.1 hypothetical protein NGA_0622800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 263.5 bits (672), Expect = 3.200e-66 Identity = 146/310 (47.10%), Postives = 173/310 (55.81%), Query Frame = 0 Query: 1 MPPQRNGDLLGPGPTARIVGDEGEIEGXXXXXXXXXXXXXKVHGTNGCQYMLNEDWPRRGDATGDTYRCIQRGPAGDESVVAIKVARSTLD-------------NSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATKSGMLCPPAYTIAMVTEFGGLKAMPSARFLVTVPVCWKTLDARVKGAERGYMETYTAEQALLWSWQIVRGLWTLAEADIGFRSFSLRNVMLTHPNGEVRLAGFDALLSSLEDKDMMEMGDGRMKDSRDGMWAVGRALHMTLTCSTDR 298 MPP +G LLGP + E KV G NG +YML+EDWPRRGDATGDTYRCI+R G ES VAIKVA+ +L + ++T+ CPPA+T+ +VTEFGGLK++PS RFLVT PVCWKTLDAR+KGAERGYME Y+ E+AL WSWQIVRGLWTL EADIG+R+ SL +V+LT PNG+VRLAGFD LLS E +G + DSR G+WAVGR LHMTLT STDR Sbjct: 1 MPPLPSGGLLGPASQFTHTTETTECR-EGVAGTGVFGEGLKVRGPNGAEYMLSEDWPRRGDATGDTYRCIRRNKDGTESTVAIKVAKCSLHDVFSSAVSQESTISVSAMSSPSSKLAAWNQEVRLLRRLALSAGTNQNCHRVDGCVEDGAAKPLDVSDAASSTRRNACCPPAHTVELVTEFGGLKSLPSMRFLVTTPVCWKTLDARIKGAERGYMEAYSREEALRWSWQIVRGLWTLQEADIGYRALSLAHVLLTQPNGDVRLAGFDVLLSD-------EGEEGEVPDSRRGLWAVGRVLHMTLTGSTDR 302 The following BLAST results are available for this feature:
BLAST of NO13G01940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01940 ID=NO13G01940|Name=NO13G01940|organism=Nannochloropsis oceanica|type=gene|length=4257bpback to top protein sequence of NO13G01940.1 >NO13G01940.1-protein ID=NO13G01940.1-protein|Name=NO13G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1162bpback to top Synonyms
Publications
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