NO13G01890, NO13G01890 (gene) Nannochloropsis oceanica

Overview
NameNO13G01890
Unique NameNO13G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr13:549331..550224 +

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Properties
Property NameValue
DescriptionUncharacterised protein family (UPF0172)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:549331..550224 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037518MPN
IPR005366UPF0172
Homology
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: EWM21853.1 (Uncharacterized protein family UPF0172 [Nannochloropsis gaditana])

HSP 1 Score: 215.7 bits (548), Expect = 1.400e-52
Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 0 
Query:   16 MVELLELPALKVLLHAAKHSHADVCGLLLGPVENTSIIDDAVPLFHHTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRNLHVAQLL 213
            MVEL  LP LK+LLH AK+ HA+VCGLLLGPV +  IIDDAVPLFHH TVGPL+ETAFL+VEQYA + GKRLAG+Y+A AQA++P   P  V     +L  + P A++LR++N+ L+SR  VPFE++ +  G  GA                  G+QAFD+V+  G FAACRSLVDMDEH DDA+RDFRN HV   L
Sbjct:    1 MVELQALPTLKILLHTAKYPHAEVCGLLLGPVNDVPIIDDAVPLFHHITVGPLMETAFLMVEQYANSEGKRLAGFYHAAAQANEPETHPLMVTLVGKELASHRPDAILLRVKNEALSSRAAVPFEVLPL-PGVEGAPKVVPVTVSPR-------GIQAFDQVSGNGKFAACRSLVDMDEHFDDARRDFRNRHVGDFL 189
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_003421046.1 (ER membrane protein complex subunit 9 isoform X2 [Loxodonta africana])

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-13
Identity = 67/193 (34.72%), Postives = 91/193 (47.15%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+     +K+ LHAA++ HA V GLLL P   T     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N G   A                    ++   V       A + LVD D HLDD ++D+ N
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPRTGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQGGLVVAGYYHANAALDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENHGLRWAPKDKNLVMWRDWE-------ESRQMVGALLEGRAHQHLVDFDSHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_023083088.1 (ER membrane protein complex subunit 9 isoform X4 [Piliocolobus tephrosceles] >XP_023083089.1 ER membrane protein complex subunit 9 isoform X4 [Piliocolobus tephrosceles])

HSP 1 Score: 85.1 bits (209), Expect = 2.900e-13
Identity = 67/194 (34.54%), Postives = 90/194 (46.39%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGA-ASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+  L  +K+ LHAA++ HA V GL L P   +     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N+G                       G    DR  Q         LVD D HLDD ++D+ N
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVDDQS-PGPLALKIAGRIADFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQ--------HLVDFDCHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: NP_001181461.1 (ER membrane protein complex subunit 9 [Macaca mulatta] >XP_003901676.1 ER membrane protein complex subunit 9 isoform X4 [Papio anubis] >XP_005560988.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Macaca fascicularis] >XP_009209544.1 ER membrane protein complex subunit 9 isoform X4 [Papio anubis] >XP_011826352.1 PREDICTED: ER membrane protein complex subunit 9 isoform X2 [Mandrillus leucophaeus] >XP_014998833.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Macaca mulatta] >XP_015309124.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Macaca fascicularis] >EHH27770.1 hypothetical protein EGK_18049 [Macaca mulatta] >EHH63501.1 hypothetical protein EGM_16482 [Macaca fascicularis])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 67/194 (34.54%), Postives = 90/194 (46.39%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGA-ASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+  L  +K+ LHAA++ HA V GL L P   +     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N+G                       G    DR  Q         LVD D HLDD ++D+ N
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQ--------HLVDFDCHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_004421253.1 (PREDICTED: ER membrane protein complex subunit 9 [Ceratotherium simum simum])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 67/193 (34.72%), Postives = 90/193 (46.63%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPV---ENTSIIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+     +K+ LHAA++ HA V GLLL PV   E+   + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N G                           D         A + LVD D HLDD ++D+ N
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPVPRSEDCLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGTLLDG-------RAYQHLVDFDCHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_007947400.1 (PREDICTED: ER membrane protein complex subunit 9 [Orycteropus afer afer])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 68/194 (35.05%), Postives = 90/194 (46.39%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGA-ASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+     +K+ LHAA++ HA V GLLL P  ++     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL     VP  IV  N G   A                   G    DR  Q         LVD D HLDD ++D+ N
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPHSRECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGTQGGLVVAGYYHANAALDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPHPRVPPVIVLENHGPRWAPKDKNLVMWRDWEESRQMVGALLEDRAHQ--------HLVDFDSHLDDIQQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_007984478.1 (PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Chlorocebus sabaeus] >XP_007984479.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Chlorocebus sabaeus] >XP_011786176.1 PREDICTED: ER membrane protein complex subunit 9 isoform X2 [Colobus angolensis palliatus])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 67/194 (34.54%), Postives = 90/194 (46.39%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGA-ASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+  L  +K+ LHAA++ HA V GL L P   +     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N+G                       G    DR  Q         LVD D HLDD ++D+ N
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQ--------HLVDFDCHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_010362088.1 (PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Rhinopithecus roxellana] >XP_017745715.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Rhinopithecus bieti] >XP_017745716.1 PREDICTED: ER membrane protein complex subunit 9 isoform X3 [Rhinopithecus bieti])

HSP 1 Score: 84.7 bits (208), Expect = 3.700e-13
Identity = 67/194 (34.54%), Postives = 90/194 (46.39%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGA-ASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+  L  +K+ LHAA++ HA V GL L P   +     + D VPLFH H  +  +LE A   V+ +    G  +AGYY+A A  DD S P P  L  A ++   +P AV++ L N KL  +  VP  IV  N+G                       G    DR  Q         LVD D HLDD ++D+ N
Sbjct:    4 VEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVDDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQ--------HLVDFDCHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_004698544.1 (PREDICTED: ER membrane protein complex subunit 9 [Echinops telfairi])

HSP 1 Score: 84.3 bits (207), Expect = 4.900e-13
Identity = 66/195 (33.85%), Postives = 92/195 (47.18%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIF--AACRSLVDMDEHLDDAKRDFRN 206
            VE+     +K+ LHAA++ HA V GLLL P   +     + D VPLFH H  +  +LE A   V+ ++   G  +AGYY+A A  DD S P P  L  A ++   +P+AV++ L N KL  +  VP  IV  N G                            R T   +    A + LVD D HLDD ++D+ N
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPASRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWSAQGGLVVAGYYHANAVLDDQS-PGPLALKIAGRIAEFFPAAVLIMLDNQKLVPQPRVPPVIVLENHGPRWTPKDKNLVMWRDWEE---------SRQTVGALLEGRAHQHLVDFDAHLDDIRQDWTN 188
[Close]
BLAST of NO13G01890 vs. NCBI_GenBank
Match: XP_008156689.1 (PREDICTED: ER membrane protein complex subunit 9 [Eptesicus fuscus])

HSP 1 Score: 84.3 bits (207), Expect = 4.900e-13
Identity = 66/193 (34.20%), Postives = 91/193 (47.15%), Query Frame = 0 
Query:   17 VELLELPALKVLLHAAKHSHADVCGLLLGPVENTS---IIDDAVPLFH-HTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASXXXXXXXXXXXXXXXGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRN 206
            VE+     +K+ LHAA++ HA V GLLL P   +     + D VPLFH H  +  +LE A   V+ +    G  LAGYY+A A   D S P P  L  A ++   +P AV++ L N KL S+  VP  IV  N+G                        Q    + +     A + LVD D HLDD ++D+ N
Sbjct:    4 VEISARAYVKMCLHAARYPHAAVNGLLLAPAPQSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVLAGYYHANAALGDQS-PGPLALKIAGRIAEFFPDAVLIMLDNQKLVSQPHVPPVIVLENQGLCWVPKDKNLVMWRDWEE----SRQMVGALLES---RAQQHLVDFDCHLDDIRQDWTN 188
The following BLAST results are available for this feature:
BLAST of NO13G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21853.11.400e-5256.35Uncharacterized protein family UPF0172 [Nannochlor... [more]
XP_003421046.11.300e-1334.72ER membrane protein complex subunit 9 isoform X2 [... [more]
XP_023083088.12.900e-1334.54ER membrane protein complex subunit 9 isoform X4 [... [more]
NP_001181461.13.700e-1334.54ER membrane protein complex subunit 9 [Macaca mula... [more]
XP_004421253.13.700e-1334.72PREDICTED: ER membrane protein complex subunit 9 [... [more]
XP_007947400.13.700e-1335.05PREDICTED: ER membrane protein complex subunit 9 [... [more]
XP_007984478.13.700e-1334.54PREDICTED: ER membrane protein complex subunit 9 i... [more]
XP_010362088.13.700e-1334.54PREDICTED: ER membrane protein complex subunit 9 i... [more]
XP_004698544.14.900e-1333.85PREDICTED: ER membrane protein complex subunit 9 [... [more]
XP_008156689.14.900e-1334.20PREDICTED: ER membrane protein complex subunit 9 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001736NSK001736Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01890.1NO13G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596426gene_6817Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100051g34gene8608Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01890.1NO13G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01890 ID=NO13G01890|Name=NO13G01890|organism=Nannochloropsis oceanica|type=gene|length=894bp
AAAACACATGTGCAGCTCTCTGCCACAGCCAGTGACGTCTGTGCTACACG
CCATGGTGGAACTACTCGAGCTGCCGGCCCTCAAGgtgcgttgagctcac
cccatagtccgatgatcatttcttttatgtagcgtcgtcgtcatcatcat
tatcatgcctcctccctacccaaccagGTCCTACTGCACGCTGCCAAGCA
TTCTCATGCCGATGTCTGTGGTCTGCTTTTAGGCCCTGTAGAGgtaagcc
ttgaaatagagaaccccccccaatctgcctccctcccttcacgtccctcc
caatctcctcactcccttcctatctcaccataaccacaaccgtaccatta
gAATACATCCATCATTGACGACGCCGTTCCCCTCTTCCATCACACCACGG
TGGGTCCCCTGCTGGAGACGGCATTTTTGCTGGTGGAGCAGTACGCCCTC
ACCAGGGGTAAGCGTTTGGCAGGCTACTACTACGCGGTCGCCCAGGCCGA
CGACCCCTCCCACCCCCCTCCCTCAGTTCTGGCCGCGGCCTTTCAGCTCC
AAGGCAACTATCCAAGCGCAGTGGTCCTCCGCCTCCGCAACGACAAGCTC
GCCAGCCGGACAGTCGTGCCTTTTGAGATAGTGTCCATCAACGAAGGAGC
AGCAGGGGCAGCATCAGGAAATGCAGGAGCAGCAGCCGCGGGGTCGTTAA
AAGTGGGAGCGGGGGGTATGCAGGCCTTTGATAGGGTCACGCAGAAGGGC
ATTTTTGCTGCATGTCGGTCATTGGTGGACATGGACGAGCATTTGGATGA
TGCGAAACGAGACTTTCGGAATCTGCATGTTGCGCAACTGCTGTTATAGA
TTAGATAGATATAAAGAAGATGGATAGCTCTTGCTGAAGCAAGT
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protein sequence of NO13G01890.1

>NO13G01890.1-protein ID=NO13G01890.1-protein|Name=NO13G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MCSSLPQPVTSVLHAMVELLELPALKVLLHAAKHSHADVCGLLLGPVENT
SIIDDAVPLFHHTTVGPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDP
SHPPPSVLAAAFQLQGNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAG
AASGNAGAAAAGSLKVGAGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAK
RDFRNLHVAQLLL*
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Synonyms
Publications