NO13G01840, NO13G01840 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01840 vs. NCBI_GenBank
Match: EWM21844.1 (light tctex-type 1 [Nannochloropsis gaditana]) HSP 1 Score: 156.0 bits (393), Expect = 1.000e-34 Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 0 Query: 1 MEHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIALHLTGYVSSGNGGGA 122 M ++ LL +I+ IV S+V AIL +S YSS KVNDW+ TILD CLR+ VALNRP KYLL+ VLSQKNGAGFRS++S++WD RSD + V WEN+H+HC+VTI+ IAL + G + SG+G A Sbjct: 1 MTSQNDLLHEINDIVQSSVEAILGTSMYSSNKVNDWVQTILDTCLREFVALNRPCKYLLTSVLSQKNGAGFRSISSEFWDDRSDCSYVVHWENEHMHCIVTIYVIALDINGPILSGDGATA 121
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_002955342.1 (flagellar inner arm dynein light chain [Volvox carteri f. nagariensis] >EFJ43642.1 flagellar inner arm dynein light chain [Volvox carteri f. nagariensis]) HSP 1 Score: 103.6 bits (257), Expect = 6.100e-19 Identity = 41/107 (38.32%), Postives = 70/107 (65.42%), Query Frame = 0 Query: 1 MEHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 +E + + DD+ I+ ++ A+L + YS KV+ W + L+ C++ L ALN+P KY+++CV+ QKNGAG + AS +WD +D +R V WEN ++C+ T+ +A+ Sbjct: 8 VEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCVIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSLYCICTVFGLAI 114
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_001702138.1 (flagellar inner arm dynein light chain Tctex1 [Chlamydomonas reinhardtii] >1XDX_A Chain A, Solution Structure Of The Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1 >1XDX_B Chain B, Solution Structure Of The Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1 >AAC18035.1 dynein light chain Tctex1 [Chlamydomonas reinhardtii] >PNW87847.1 hypothetical protein CHLRE_01g004250v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 102.8 bits (255), Expect = 1.000e-18 Identity = 40/107 (37.38%), Postives = 70/107 (65.42%), Query Frame = 0 Query: 1 MEHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 +E + + DD+ I+ ++ A+L + YS KV+ W + L+ C++ L ALN+P KY+++C++ QKNGAG + AS +WD +D +R V WEN ++C+ T+ +A+ Sbjct: 8 VEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
BLAST of NO13G01840 vs. NCBI_GenBank
Match: PNH12146.1 (Dynein light chain Tctex-type 1 [Tetrabaena socialis]) HSP 1 Score: 102.8 bits (255), Expect = 1.000e-18 Identity = 41/107 (38.32%), Postives = 70/107 (65.42%), Query Frame = 0 Query: 1 MEHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 +E + + DD+ I+ +V A+L + YS KV+ W + L+ C++ L ALN+P KY+++C++ QKNGAG + AS +WD +D +R V WEN ++C+ T+ +A+ Sbjct: 8 VEEAAFVADDVSNIIKESVDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIVQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_973473.1 (PREDICTED: dynein light chain Tctex-type [Tribolium castaneum] >XP_008199731.1 PREDICTED: dynein light chain Tctex-type [Tribolium castaneum] >XP_015837145.1 PREDICTED: dynein light chain Tctex-type [Tribolium castaneum] >EFA06806.1 Dynein light chain Tctex-type-like Protein [Tribolium castaneum]) HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18 Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = 0 Query: 2 EHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 E ++DD+ KI+ A+ ++ + YS KVNDW ++++ C +L L +P KY+++C + QKNGAG + +S YWD +D + V WEN + C+V+++ +A+ Sbjct: 15 EEGQFVVDDVSKIIKDAIETVIGGNAYSQNKVNDWTTSVVECCTSELTKLMKPYKYIVTCTIMQKNGAGLHTASSCYWDNNTDGSCTVRWENKTMFCIVSVYGLAI 120
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_003062873.1 (flagellar inner arm dynein light chain Tctex1 [Micromonas pusilla CCMP1545] >EEH52812.1 flagellar inner arm dynein light chain Tctex1 [Micromonas pusilla CCMP1545]) HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18 Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0 Query: 9 DDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 DD+++I+ ++ A+L ++ YS KV W + ++ LR L AL +P KY+++CV+ QKNGAG + +S YWD +D R V WEN ++C+VT+ +A+ Sbjct: 8 DDVNEIIKESIDAVLQNAAYSHAKVGQWTSSAVETTLRRLTALKKPFKYVVTCVIMQKNGAGLHTASSCYWDNETDGARTVRWENKSMYCIVTVFGLAV 106
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_018944927.1 (PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >XP_018944934.1 PREDICTED: dynein light chain Tctex-type 1-like [Cyprinus carpio] >KTF81972.1 hypothetical protein cypCar_00045612 [Cyprinus carpio]) HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18 Identity = 37/106 (34.91%), Postives = 72/106 (67.92%), Query Frame = 0 Query: 2 EHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 E + ++D++ IV ++ A++ + Y K+VN W+ ++++ CL L L++P KY+++C++ QKNGAG +S +S +WD +D + V WEN H++C+V++ +A+ Sbjct: 8 EETAFVVDEVSSIVKESLEAVIGRNPYEQKRVNQWVSSVVEQCLGQLSKLSKPFKYIVTCIIMQKNGAGLQSASSCFWDNTTDGSCTVRWENKHLYCIVSVFGLAI 113
BLAST of NO13G01840 vs. NCBI_GenBank
Match: GAX78400.1 (hypothetical protein CEUSTIGMA_g5842.t1 [Chlamydomonas eustigma]) HSP 1 Score: 99.8 bits (247), Expect = 8.800e-18 Identity = 39/106 (36.79%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 2 EHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 E + + DD+ I+ ++ ++L + YS KV+ W + L+ C++ L LN+P KY+++CV+ QKNGAG + AS +WD +D +R V WEN ++C+ T+ +A+ Sbjct: 8 EEAAFVADDVSNIIKESIDSVLQNQPYSENKVSQWTSSCLENCIKKLTGLNKPFKYVVTCVIMQKNGAGLHTAASCWWDATTDGSRTVRWENKTMYCICTVFGLAV 113
BLAST of NO13G01840 vs. NCBI_GenBank
Match: XP_011496390.1 (PREDICTED: dynein light chain Tctex-type 1 [Ceratosolen solmsi marchali]) HSP 1 Score: 98.6 bits (244), Expect = 2.000e-17 Identity = 39/106 (36.79%), Postives = 66/106 (62.26%), Query Frame = 0 Query: 2 EHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTIHAIAL 108 E ++DD+ KI+ A+ A + + YS KVN W ++++CL L L +P KY++SC + QKNGAG + +S +WD +D + V WEN ++C+V++ +A+ Sbjct: 6 EETQFVVDDVSKIIKDAIEAAIGGNVYSHSKVNQWTSNVVESCLGHLTKLQKPYKYIVSCTIMQKNGAGLHTASSCFWDNATDGSCTVRWENKTMYCIVSVFGLAI 111
BLAST of NO13G01840 vs. NCBI_GenBank
Match: GAQ81501.1 (hypothetical protein KFL_000820080 [Klebsormidium nitens]) HSP 1 Score: 98.6 bits (244), Expect = 2.000e-17 Identity = 36/101 (35.64%), Postives = 67/101 (66.34%), Query Frame = 0 Query: 2 EHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVALNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLVTI 103 E + + DD++ I+ AV L ++ Y+ K+ W + ++++CL+ L A+N+P KY+++C++ QKNGAG + +S +WD +D +R V WEN ++C+ T+ Sbjct: 8 EEAAFVADDVNNIIKEAVDGALMNAAYNQTKIGQWTNNVVESCLKRLTAMNKPFKYIVTCIIMQKNGAGLHTASSCFWDNSTDGSRTVKWENKSMYCITTV 108 The following BLAST results are available for this feature:
BLAST of NO13G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01840 ID=NO13G01840|Name=NO13G01840|organism=Nannochloropsis oceanica|type=gene|length=6297bpback to top protein sequence of NO13G01840.1 >NO13G01840.1-protein ID=NO13G01840.1-protein|Name=NO13G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bpback to top Synonyms
Publications
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