NO13G01760, NO13G01760 (gene) Nannochloropsis oceanica

Overview
NameNO13G01760
Unique NameNO13G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2743
Alignment locationchr13:515982..518724 +

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Properties
Property NameValue
DescriptionThioredoxin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:515982..518724 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain
IPR012936Erv_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Homology
BLAST of NO13G01760 vs. NCBI_GenBank
Match: CBN74492.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 341.3 bits (874), Expect = 3.900e-90
Identity = 173/383 (45.17%), Postives = 251/383 (65.54%), Query Frame = 0
Query:    2 LDLPCRFAVVDVLDVLGTNRMNIT-KNIEKWNLDEEGRRRFFQGRNREEREILHDDHH--AELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLC-KDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRL------NVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLR 375
            LDLPC +  VD LDVLG+NR+NIT K ++KW+LD +G ++ F GRNR++R+I+  D    A L+ L ++G HA  LT ++FD ++  ++FTFV+F+APWC WCQRL PT E  AE +E     I V  VDC T   LC K   V AFPTL+LFN    L PDY+ DRTV A ++Y+  +       +  + RK +PE      + PGCM++GH++VNRVPGNFHIEA SK+H  +  +TNLSH+V+H+SFG        T++ + + +   +  LDG ++V + YH+A HHY++VVG++Y +     K     YQ++  + +M Y  ++VPEA+FSY ISPM+V+V+   R WY+F T +  I+GGTF++VGL+D+ + R  R
Sbjct:  478 LDLPCEYLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQDLHEDGVHAAVLTEENFDTWLLEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKPMKHQRKGRKGFPEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHGATTNLSHIVHHMSFGNDPPRRTQTKINRLTEDLRQNAPLDGNVYVANAYHQAPHHYLRVVGSMYHLSPM--KTPWHGYQIVANSQMMLYDEEEVPEARFSYNISPMSVLVRSEKRPWYDFVTKVLAIVGGTFSMVGLVDAAVFRASR 858          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_002295232.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87536.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 337.4 bits (864), Expect = 5.700e-89
Identity = 173/386 (44.82%), Postives = 246/386 (63.73%), Query Frame = 0
Query:    1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQ--NGE-HAIPLTADSFDEY-MQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVE--HPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFG-----PLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRP 376
            + DL C +A VD+ D LGTN+ NITK+I KWNLD++G+R+ F GRN E+R + H++H   L+ L     GE HA+ L  +S  E+  + N    + FYAPWC+WCQRL PTWE FA  V  E I + V KVDCVTH QLCKDQ+V AFPTLR F     + PDY  DRTV AL  Y  RR+       N    D E+ E  HPGC++SGHL+VNRVPG F IEARS  H L++  TNL+H V+ L+FG     P +   VL   +    ++  +N +  + +   E+H+A HH++K++ T   +   + +  +  YQ+L ++ ++ Y   +VPE +FS+++SPM+V V + GR+WYE+ TSL  I+GGT+T +GL+++TL R+ +P
Sbjct:  108 LYDLHCDYASVDIWDTLGTNQQNITKDIVKWNLDDQGQRKKFAGRNAEQRAVTHEEHDETLQDLADALGGELHAVALDPESIVEFHKRHNGQAIIDFYAPWCIWCQRLEPTWEKFARQVSDERINLGVGKVDCVTHAQLCKDQRVMAFPTLRWFENGKAVMPDYRGDRTVDALVDYAKRRVG-----SNEGSNDEEFEEDHHPGCLISGHLMVNRVPGRFQIEARSVNHELHSAMTNLTHRVHDLTFGALSGPPGHMLHVLPFFDTVPEKYKHTNPMQDKYYPTYEFHQAFHHHLKIIST--HIDYLFSRSTVL-YQILEQSQLVFYEEVNVPEIQFSFDLSPMSVNVSKEGRKWYEYVTSLCAIIGGTYTTLGLINATLLRIFKP 485          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_009040624.1 (hypothetical protein AURANDRAFT_55105 [Aureococcus anophagefferens] >EGB04710.1 hypothetical protein AURANDRAFT_55105 [Aureococcus anophagefferens])

HSP 1 Score: 325.5 bits (833), Expect = 2.200e-85
Identity = 159/325 (48.92%), Postives = 217/325 (66.77%), Query Frame = 0
Query:   72 IPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVE------------AESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDR----EYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGK-EDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRPSTKL 380
            +PL   +F+ ++  N + FV+F+APWC+WCQRL PTWEA AE VE            + SI + V KVDCV +  LC  Q++ AFPTLR F  A     DY  DRTVAA+  ++ +++ +E+  ++W  R +    E  EHPGCM+SGH+LVNRVPGNFHIEARS  HNLNA  TNLSHVVNHLSFG     ++  ++ K+  +F   + LDG +FV  +YH+ HHHY KVV T +EV     K  ++  YQML ++ +M Y   DVPEAKFSY++SPMAV+V   GRRWY+F TS+  I+GGTFTVVG++D+ L+++++   +L
Sbjct:    1 MPLDETNFESFLSENPYVFVNFFAPWCIWCQRLEPTWEAMAEEVERLNREVEQVDERSTSIDVDVVKVDCVANRNLCGTQRIQAFPTLRFFKDAQQYGIDYKQDRTVAAMVDFLKQKVELEKTMEDWHPRRKQRMLEIKEHPGCMVSGHVLVNRVPGNFHIEARSIHHNLNAAMTNLSHVVNHLSFGTPLAKDMQRKVSKY-PQFQSVHPLDGGIFVSRDYHQVHHHYSKVVSTHFEVGGMMTKSREIVGYQMLAQSQIMHYNEMDVPEAKFSYDLSPMAVLVSSKGRRWYDFVTSVCAIIGGTFTVVGIVDAVLYKIIKGGKQL 324          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_009040032.1 (hypothetical protein AURANDRAFT_31008, partial [Aureococcus anophagefferens] >EGB05387.1 hypothetical protein AURANDRAFT_31008, partial [Aureococcus anophagefferens])

HSP 1 Score: 324.3 bits (830), Expect = 5.000e-85
Identity = 165/375 (44.00%), Postives = 229/375 (61.07%), Query Frame = 0
Query:    4 LPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPL-PPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREY-----VEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRL 373
            L C +A VD+ D +G N+ N+T+NIEKW LDE+G +R +QGRNR   +I HD HH  +E +  NG H   + AD ++   + +E+ FV FYAPWC++CQ L  TWEA AE +E   + + VA VDCV +   C D KV  FPTLR ++    +   +Y  DRTVAAL  +VTR+L  E   + +PE    +      +HPGC++SG LLVNRVPGNFH+ A S+ H+LN + TNLSH V+HLSFG    D    +L         +++LDG  +  D+YH A+ H+V +V T Y +   W ++    +Q L    ++ YA    PEA+FSY+ISPMAV+V     +WY+F TSL  I+GGTF +  L + T  RL
Sbjct:   71 LHCDYASVDLWDKIGRNQANVTQNIEKWQLDEDGVKRMYQGRNRRAFDIDHDVHHPPIEEMHANGVHVWHVNADEWEGLHEHHEYVFVDFYAPWCLYCQSLRSTWEALAEELEKRDLGVAVAAVDCVDNEAFCHDMKVQTFPTLRFYHHGEQVNEGEYRFDRTVAALTDFVTRKLESENIYRQYPEARVAHAANWNTDHPGCLVSGFLLVNRVPGNFHVMAHSRHHSLNTLRTNLSHTVHHLSFGVPLTDAQHRKLATIDVRHARTDTLDGEDYYHDDYHYAYQHFVHIVPTKYNLGVFW-RDRFAAFQTLHSHHLLKYAEHVPPEARFSYDISPMAVVVDTVRVKWYDFLTSLLAIVGGTFALFKLANDTAARL 444          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: EJK46164.1 (hypothetical protein THAOC_35181 [Thalassiosira oceanica])

HSP 1 Score: 305.8 bits (782), Expect = 1.800e-79
Identity = 160/379 (42.22%), Postives = 225/379 (59.37%), Query Frame = 0
Query:    7 RFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVL--LQNGE-HAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLY--QDEVLTR---LEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLRPST 378
            R    DV D LGTN+ NITK++ K+++D  G +  F GRNRE+ ++ H  H   LE +     GE H+I LT +   +  +  +  FV ++APWCVWCQRLAPTWE FAE V    + + VAKVDCV H QLCKD+++ AFPTLR +     + PDY  DRTV AL  Y TRRL   ++       D     HPGC +SGHL+VNRVPGN H+EA+S  H +N+  TNL+H V+HLSFG     Q   L R   L     EF  +N + GR+F    +H++ HH++KVV T  +   R        YQ+L E+ ++ Y + +VPE KF +++SPM + V    R WY++ T+   I+GG +  +GL++  L  + +P +
Sbjct:  112 RLGYADVWDSLGTNQQNITKDVTKYHIDRNGEQASFHGRNREQTKVDHQVHDETLEDIADANGGELHSIDLTPEKRKDTFETWDVVFVDYFAPWCVWCQRLAPTWEKFAEQVTKRHVQLGVAKVDCVAHAQLCKDERIMAFPTLRWYEHGRAVMPDYKGDRTVGALVEYATRRLGEGQE-------DESEDHHPGCQVSGHLMVNRVPGNLHMEAKSIHHEINSAMTNLTHRVDHLSFGDERGPQGHFLDRFAFLGGVPDEFKHTNPMKGRLFQTHRFHESFHHHLKVVTTTIDYLFR----PTALYQILAESQLVLYELQEVPEIKFLWDMSPMGIEVDVERRPWYDYITTCLAIVGGAYASLGLINRALLAMFKPKS 479          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_002177433.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51896.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 281.6 bits (719), Expect = 3.700e-72
Identity = 162/439 (36.90%), Postives = 244/439 (55.58%), Query Frame = 0
Query:    1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHH--AELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFA-----------------------EHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLP-PDYNTDRTVAALASYVTR--------------------------RLNVE----EKRKNWPERDREY----------VEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSL---DGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLH 371
            ++DL C +AVVDV+ VLGT + N++ +I KW +D EG R+ + GRN+++++I   D    + +E L  +GE A+ L  ++ +  ++  ++ FV FYA WC  C+ LAPTWE  A                       EH +   +P+ +AK+DCV H Q+C  Q +  +PTLRLF         DY  DRTV A A ++ +                          RL+ E    ++   W E+ + +           EHPGC ++GHLL++RVPGNFHI+ARS  H+L    TN+SHVV+HLS G    + ++ + EK      V   L   +G  +V  E H+A+HHY+KV+ T  +   ++GK D+  YQ+L  + +  Y  D +PEAKF +++SP+AV  + T RRWY++ TS+  I+GGTFTVVGLL+ST+H
Sbjct:   76 LMDLRCEYAVVDVVSVLGTEQ-NVSSHITKWGVDAEGVRKRYAGRNKDQKDIKMFDSSVTSTIEELYSDGEDAVSLDEETLEYALRDQQYLFVDFYASWCSHCRALAPTWETLAEVMSDVAEDLVEQHDHEYSEEEYEHAKKVEMPVMIAKIDCVLHKQVCMKQGILGYPTLRLFVDGERWKGGDYRGDRTVVAFADWLQQVEDAHKTDTENSSAKNVQLAHMAAKDRLDSEDEGSDEEHEWAEKVKRHKQRLHHSWVDAEHPGCNIAGHLLLDRVPGNFHIQARSPHHDLVPHMTNVSHVVHHLSIGEPVAERLIEQ-EKVILPEDVKRKLKPMNGNAYVTKELHEAYHHYLKVITTNVD-GLKFGKRDLRAYQILQSSQLSFYRNDIIPEAKFVFDLSPVAVSYRTTSRRWYDYFTSILAIIGGTFTVVGLLESTIH 511          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_002287517.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED94960.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 276.6 bits (706), Expect = 1.200e-70
Identity = 155/392 (39.54%), Postives = 234/392 (59.69%), Query Frame = 0
Query:    1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREI-LHDDHHAE-LEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAE--HVEAES---IPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVE------HPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNS--LDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWG-------KEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLH 371
            M+DL C +A +DV+ VLGT + N+T++++K+ +D+ G R+  + RN+ + ++ L D    E +E L  +GE AI L   + +  +Q N + FV F+A WC  C+ LAPTWE  AE  +  AES   +P+ + K+DCV H  LC+  ++ A+PTL+ F     +  DY   RTV  +A ++   +    K K    +D    E      HPGC +SG LLV+R PGNFHI+A+SK H+L A  TN+SH++NHLSFG  +    L    K +   ++  +   DG +++    H+AHHHY+KV+ T +E P++         KE    YQ+L  + +  Y  D VPEAKF+Y++SP+AV   +  R WY++ TSL  I+GGTFTVVG+L+S +H
Sbjct:   70 MMDLKCDYATIDVVSVLGT-QQNVTQHVQKFPIDQYGVRQRMKARNKNQHDVQLFDSTIQETIEELHADGEDAISLDETTLNVALQENTYVFVDFFANWCSHCRDLAPTWETLAEVMYEAAESRVQLPVMIGKIDCVDHGGLCQRMQIQAYPTLKFFVDGEEM-GDYRGHRTVIEMAHFIA-EMEKTHKGKGGVAQDATESEYSVLKNHPGCQISGFLLVDRAPGNFHIQAQSKGHDLAAHMTNVSHIINHLSFGKPFSKYFLKDGLKNTPPGFLETTKPFDGNVYITQNEHEAHHHYLKVITTEFE-PEKGAQNSKYNKKEPSRAYQILQSSQLSLYRSDIVPEAKFTYDLSPIAVSYNKKYRHWYDYFTSLMAIIGGTFTVVGMLESGIH 457          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: OEU08711.1 (DUF1692-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 273.1 bits (697), Expect = 1.300e-69
Identity = 168/459 (36.60%), Postives = 246/459 (53.59%), Query Frame = 0
Query:    1 MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREI-LHD-DHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAE-------------------------------------HVEAESIPIKVAKVDCVTHTQLC-KDQKVHAFPTLRLFNRASPLP--PDYNTDRTVAALASYV--------------------TRRLNV--------------EEKRKN-----------WPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFG--PLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLH 371
            M DL C +AV+DV+ VLGT++ N+T ++ KWN+D +G R+ ++GRNR +++I L D D    LE L ++GE AI  T  + +EY +  ++ FV F+A WC  C+ LAPTWEA AE                                     H  + +IP+ +AKVDCV H  LC +++++ A+PTLRLF     LP   DY   RTV  +  ++                     R L+               E KRKN           W E D     HPGC LSGHLL++RVPGNFHI ARSK H+L+   TN+SH+VN LS G   + +   ++  E   S+    + +DG  +  +  H+++HHY+KV+ T+           +  YQ++P T +  Y  D VPEAKF Y++SP++V  ++  RRWYE+ TSLF I+GG FT+VG+++S++H
Sbjct:   88 MTDLSCDYAVIDVVSVLGTDQ-NVTAHVTKWNIDNKGVRKGYKGRNRNQKDITLFDVDIKETLEELHEDGEDAITFTPITIEEYKKNYDYVFVDFFASWCSHCKDLAPTWEALAEVMTEASITIVEDQQEEDAANAKXXXXXXHNYSDEDFQHAVSVNIPVIIAKVDCVDHKFLCNQEEEIRAYPTLRLFIDGKTLPGGSDYKGHRTVMEMVDWLKHMEEQHKSAMLTVGDEGEPIRTLHTAHETAKEYMGVDLEEYKRKNDKKNNNRLYNEWKESD-----HPGCQLSGHLLLDRVPGNFHILARSKHHDLSPHLTNVSHMVNSLSIGYPGIARAGAMSLPENVQSKL---SPMDGNTYTTNNLHESYHHYLKVITTI--------SPGVNLYQIIPSTQLSYYKADMVPEAKFVYDLSPISVTYRKESRRWYEYVTSLFAIIGGVFTMVGMIESSIH 529          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_005715706.1 (Protein disulfide-isomerase, PDIA-6 Membrane [Chondrus crispus] >CDF35887.1 Protein disulfide-isomerase, PDIA-6 Membrane [Chondrus crispus])

HSP 1 Score: 270.4 bits (690), Expect = 8.600e-69
Identity = 153/388 (39.43%), Postives = 220/388 (56.70%), Query Frame = 0
Query:    3 DLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFF-----QGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDR--EYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNS-LDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVD-DVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLH----RLLRPST 378
            +LPCRFA V+V D LG  ++N+  +I K  L  E           +G    +    H+D H          E  + LT+ ++ +Y++ NE+TFV +Y  WC +C+   P W  FA+H+ +    +K+A+VDC  + +LC+  K+  +PT  +F   +PL  DY  +R+V A + YV       EK  + P  D   +Y    GC+L G LLVNRVPGNFHI A+S AHN +  STN SH+++HLSFG   Q ++   + K   +  V+ S LD  +F+  + H +H HY+KVV T Y+      ++D+  YQM   TS   Y  D +VPE +FSY++SP AV++ + GRRWYEF TSL  I+GGTFT   L+D  LH    RL RP T
Sbjct:   75 ELPCRFANVEVWDYLGNAKLNVDADISKTILGHEQNENHLTEYKDKGTVATQLVDKHEDAHLP--------EQVVELTSSNYGQYLKQNEYTFVIYYVNWCGFCKMALPVWSKFAKHLPSIRPNVKIAQVDCEKNAELCQATKITGYPTFIMFKGVNPLEEDYGGERSVEAFSKYV-------EKVSDTPPDDHNLKYQWQEGCLLGGRLLVNRVPGNFHISAKSDAHNFDQKSTNTSHLIHHLSFGGEMQHDLYMAVPK---DIRVNISPLDDILFINHKEHMSHEHYIKVVSTHYQAGSLRRRKDVLGYQM--ATSNHQYKSDPNVPETRFSYDLSPTAVVISQAGRRWYEFLTSLCAIIGGTFTTFSLMDGVLHSMQRRLARPVT 442          
BLAST of NO13G01760 vs. NCBI_GenBank
Match: XP_005716385.1 (Protein disulfide-isomerase, PDIA-5 Membrane [Chondrus crispus] >CDF36566.1 Protein disulfide-isomerase, PDIA-5 Membrane [Chondrus crispus])

HSP 1 Score: 267.7 bits (683), Expect = 5.500e-68
Identity = 153/374 (40.91%), Postives = 213/374 (56.95%), Query Frame = 0
Query:    2 LDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQR--WGKEDMFTYQMLPETSVMSYAVD-DVPEAKFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRL 373
            L LPC FA VDV D LG  R+++TKN+ K  +    R R   G   +     + D   E++  +   E +  +   +FD+ +  N +TFV F+APWC+ C +LAPTWEAFA+ V  + I +KV KVDC  +  LC+ Q++  +PTLR++    P  PDY   RTV+ L S++    +     K    ++       GC++ G + VNRVPGNFHI A+SK H+ +  + NLSHVV+H SFG      V+  L          N LDGR FV  E H  H HY+KVV T Y V +   + +ED   YQM   TS   Y  D  +PEAKFS+++SP AV++ + G+RWYEF TSL  I+GG FTVV L D  ++ +
Sbjct:   74 LRLPCEFASVDVWDYLGNTRLDLTKNLHK-TMVSGPRGRDILGAYSDGNAFSNGDSEDEVKAHIGLSE-SEEIMQSNFDQKLAENAWTFVDFFAPWCIHCVKLAPTWEAFAKTVHDKDIRVKVFKVDCTKNEFLCRSQQISGYPTLRVYKGNHPQHPDYFGKRTVSTLISWMESMTHEHAHAKTRLHKEE------GCLVEGAIWVNRVPGNFHITAKSKGHDFDPKAMNLSHVVHHFSFGKPLPRRVIRHLPDDVKRNI--NPLDGRSFVNTEEHTTHEHYIKVVSTHYRVGKSSIFNREDSLGYQM--ATSNHRYKSDPGIPEAKFSFDLSPTAVVIIQGGKRWYEFVTSLCAIIGGIFTVVSLFDGAMYSI 435          
The following BLAST results are available for this feature:
BLAST of NO13G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74492.13.900e-9045.17DEAD box helicase [Ectocarpus siliculosus][more]
XP_002295232.15.700e-8944.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_009040624.12.200e-8548.92hypothetical protein AURANDRAFT_55105 [Aureococcus... [more]
XP_009040032.15.000e-8544.00hypothetical protein AURANDRAFT_31008, partial [Au... [more]
EJK46164.11.800e-7942.22hypothetical protein THAOC_35181 [Thalassiosira oc... [more]
XP_002177433.13.700e-7236.90predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002287517.11.200e-7039.54predicted protein, partial [Thalassiosira pseudona... [more]
OEU08711.11.300e-6936.60DUF1692-domain-containing protein [Fragilariopsis ... [more]
XP_005715706.18.600e-6939.43Protein disulfide-isomerase, PDIA-6 Membrane [Chon... [more]
XP_005716385.15.500e-6840.91Protein disulfide-isomerase, PDIA-5 Membrane [Chon... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001724NSK001724Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01760.1NO13G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G01760.2NO13G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596475gene_6830Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100051g23gene8598Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01760.1NO13G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G01760.2NO13G01760.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01760 ID=NO13G01760|Name=NO13G01760|organism=Nannochloropsis oceanica|type=gene|length=2743bp
ACAGGTAGCCCTGCTGCATCGTAAGCCCTGCTGCGCATCAGTCCTCAAAG
CAGCCAACCGAAAAAGAGAGGCAAAAAACAGAACGCAGCACTATTCAAAA
CTTTTGCCCAGTCCCGCCGCCGTCGCATATCACCTACACAACACGCCTAC
GCAACGCACTTGAGCCATGGCGACACAACGTTCCGGGGCCAAGGGCATGG
ATTTGTACCGGCGGGTGCCCGCTGACCTGACCGAGACGACCAGTCTGGGT
GGGCTCTTCTCCATCGTGGCGGGgtaagtgcgggggcagagtagatgggg
ctgaagtgtggagcaccaaccgcggtcgtagtgctctcacgctggaaatt
ggtttcagagactcaatctcattctcatttaatagGGTATTCATGGCCAT
TCTTTGTGTTGTGGAGATTATCAGCTTCATGTCGCACACTACCGAGACCA
TGGTGGTCCTTGATCAAAGCCACGACCAAATGGTACGTCTACGCCCGCCC
CTCCTTCCTTTCCTCCCTCCATCCCTACTCCTCTTACTCGCTTGGATTGT
CACGACAGAGCATGCATTCTCAATTCTGCATGACCAGCCACGGTGCCCTC
CCTTTTGCGTGTCCTAGGTGGGGTTAATCCTTGCTGCTCAATCCTCGCCT
CCCTCCCTCCTTCCGTCCCTGCATAGATTCGGATAAATTTCAATATCACC
ATGCTCGATCTTCCCTGTCGCTTCGCCGTCGTGGATGTACTCGACGTCTT
GGGTACCAACCGCATGAACATCACCAAGAACATTGAAAAATGGAACCTTG
ATGAGGAAGGGCGGCGTCGTTTTTTTCAAGGCCGCAATCGGGAAGAGCGC
GAAATCCTCCACGATGACCACCACGCCGAATTGGAAGTCCTGTTGCAAAA
TGGGGAGCATGCTATCCCGCTTACCGCCGACTCCTTCGACGAATACATGC
AGGCAAATGAGTTTACATTCGTCTCCTTTTACGCTCCCTGGTGCGTGTGG
TGCCAGCGCCTGGCGCCAACCTGGGAAGCCTTCGCGGAGCACGTGGAAGC
CGAAAGCATTCCAATCAAGGTGGCCAAGGTCGATTGTGTGACGCACACAC
AGTTGTGTAAAGACCAGAAAGTGCATGCTTTCCCTACTCTTCGTTTATTC
AACAGAGCGTCGCCGTTGCCACCCGATTATAACACGGACCGGACCGTGGC
GGCGCTGGCCAGCTATGTTACCCGGAGGTTGAACGTGGAGGAGAAGAGGA
AAAATTGGCCGGAGCGCGATAGGGAGTATGTGGAGCACCCGGGTTGTATG
gtacggtgagggagggattggggtagggagggaaggagggcgggtggagg
ttgcatatccattcgttaccgcattgcgcatccatttacccgcagaggct
tcacagtggaaaaggcaggtcggtaggatgtgtttgctaccgcataaggt
gtatcaccaatcatttcgtaaagacaagaccatctcatccctccgtcccg
tcctccctcccttcctctttgcctccctcagCTCTCGGGCCACTTGCTCG
TGAACCGCGTTCCCGGGAATTTCCACATCGAAGCAAGAAGCAAGGCCCAT
AACCTCAACGCTGTCTCGACAAACTTGTCACACGTCGTCAACCACCTCTC
TTTCGGGCCTTTGTATCAAGACGAAGTCTTGACTCGATTAGAAAAATTTT
CGTCGGAGTTTTACGTCTCCAATTCTTTGGATGGACGGATGTTTGTCCTG
GACGAGTACCACAAGGCACATCACCACTATGTTAAGGTGGTCGGGACATT
GTATGAGGTTCCGCAACGCTGGGGGAAGGAAGACATGTTCACCTATCAGA
TGCTGCCGGAGgtaaggaggaaggaagggagggagggagggcaaacagag
tggagaatcatatttgactaatgttttgacgtaacaaaaggggccaagca
tttcacaccaatggatgtattatcaccctatcaccaaatggctgtggatt
aagagtggatccccaagacggcgtttgtatgtaaatatggaaattcgaat
atatcgagccacagccccggaatgtttttcaagccgaacggtgctctggc
acattctagttgtccatatttacacacaattgcactcttggggatcgaca
cctcatctacaactatttggtgatagggtgataatacatccactacttga
ctcctttcattacgtccaaacatgagtcaatgagggtgatggcgatcggc
tttttctttcgcgacgtaattctcgataatttattcttacattccttcca
cccccttccccttaaatctcaaataaatgcatagACGTCTGTCATGTCCT
ACGCCGTGGACGATGTGCCCGAAGCGAAGTTTTCCTACGAAATCTCCCCC
ATGGCCGTGATTGTCAAGAGGACCGGCCGCCGATGGTATGAATTTGGCAC
CTCTCTTTTTGGTATCTTGGGAGGTACTTTCACCGTTGTGGGCTTATTGG
ACTCGACGTTGCATCGGCTTCTCAGGCCATCGACGAAACTAAGGTCTTAG
GGAGGGACAGAAGATGTGTAGACTGGAGGGAGGCAAGTGATGCTGCCAGT
GCAAGAGATAAAGACAGTTTAGGACAGATGAGCTACGCAACAGCAGCAGT
AGCAACACGCAATTAAAAAACCAAAACAGCAGCGACAACGAAAAAGCACC
AATTCGTCAATGGAAATGTACGGGAAAACAAGTCGAATGCGCG
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protein sequence of NO13G01760.1

>NO13G01760.1-protein ID=NO13G01760.1-protein|Name=NO13G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MATQRSGAKGMDLYRRVPADLTETTSLGGLFSIVAGVFMAILCVVEIISF
MSHTTETMVVLDQSHDQMIRINFNITMLDLPCRFAVVDVLDVLGTNRMNI
TKNIEKWNLDEEGRRRFFQGRNREEREILHDDHHAELEVLLQNGEHAIPL
TADSFDEYMQANEFTFVSFYAPWCVWCQRLAPTWEAFAEHVEAESIPIKV
AKVDCVTHTQLCKDQKVHAFPTLRLFNRASPLPPDYNTDRTVAALASYVT
RRLNVEEKRKNWPERDREYVEHPGCMLSGHLLVNRVPGNFHIEARSKAHN
LNAVSTNLSHVVNHLSFGPLYQDEVLTRLEKFSSEFYVSNSLDGRMFVLD
EYHKAHHHYVKVVGTLYEVPQRWGKEDMFTYQMLPETSVMSYAVDDVPEA
KFSYEISPMAVIVKRTGRRWYEFGTSLFGILGGTFTVVGLLDSTLHRLLR
PSTKLRS*
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protein sequence of NO13G01760.2

>NO13G01760.2-protein ID=NO13G01760.2-protein|Name=NO13G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MLDLPCRFAVVDVLDVLGTNRMNITKNIEKWNLDEEGRRRFFQGRNREER
EILHDDHHAELEVLLQNGEHAIPLTADSFDEYMQANEFTFVSFYAPWCVW
CQRLAPTWEAFAEHVEAESIPIKVAKVDCVTHTQLCKDQKVHAFPTLRLF
NRASPLPPDYNTDRTVAALASYVTRRLNVEEKRKNWPERDREYVEHPGCM
LSGHLLVNRVPGNFHIEARSKAHNLNAVSTNLSHVVNHLSFGPLYQDEVL
TRLEKFSSEFYVSNSLDGRMFVLDEYHKAHHHYVKVVGTLYEVPQRWGKE
DMFTYQMLPETSVMSYAVDDVPEAKFSYEISPMAVIVKRTGRRWYEFGTS
LFGILGGTFTVVGLLDSTLHRLLRPSTKLRS*
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Synonyms
Publications