NO13G01750, NO13G01750 (gene) Nannochloropsis oceanica

Overview
NameNO13G01750
Unique NameNO13G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3199
Alignment locationchr13:512579..515777 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:512579..515777 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Homology
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BLAST of NO13G01750 vs. NCBI_GenBank
Match: EWM21845.1 (hypothetical protein Naga_100051g24 [Nannochloropsis gaditana])

HSP 1 Score: 574.7 bits (1480), Expect = 4.800e-160
Identity = 376/771 (48.77%), Postives = 460/771 (59.66%), Query Frame = 0 
Query:    1 MALEWLTLHKLGGDEDS---PPLSNVWAACEETRTCLEGGLLRRNEDGSTAESLLAWLLETGHVKSVPQARLGAFHLLSVAIVHCPATVLSANLDKLTQLLRSGMSPASSPVCRVFACRAVGALVDKAWADGGEIELKQHVQQDILSRLVTSLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSTALAANIDLRVHTTALRTLAKCAHTVGMGFKSHAAKMEAAAYASLNSPSSADPSFRQAAIACLVRVPFTYSDGGHWTAMLLTLLGEAARTLKQVWPEAHVPSSLLQMXXXXXXXXXXXXXXXXSHVSTHKMGLSPFPPLPEKGGGAVVKSYALAARARIQACLEAVATLLTFGHHHGSSPVLLPSLPLLGMCEVLLSSMPRGNSNLGATPAALPATALQALQPLLRSFGLDLLSSYLSAASSSAHHYLSRIAHLVLRALSWPVALGFRSRACALFSQVVLVMGASAAPSLVEPALLLLTHHASLHLFSTGTPLLVNSTMAA-APVISEGAGSKKKKGGALTKTATVRGREGGMIGEVLEMGTQGIEEVERVGIAVFKALETALLGCGPLLSMEGRLSLEQVVGAGLSDLNRGVPRPGAAVSSMSFGGISWVRRNAPLRAAFLGLAARALLIPRRDGAGSALTPLAARVFGVLCLDSDEGVARAALLGRAVAETITHPRAAPLFIPAALLKLDEEEDVLRGHAIRSAELSFPCAAASAGEGERGGGRKEEG----EAAVAGTKEKPSLPFPSMDKTQVAAVWSQKT 764
            MALEWLTL +LG DE +   PP     AA EE  TCL+ GLL R+EDGS AE LLAW+ E GH K+ P+ARL +F LL   + H    VLSA+L+KLTQLLRS MS AS   CR+ A + V  L+ KA   G    L+Q  QQ+ L RL  SLL                                +       L V   A R LA  A   G  FKS A K+EAA+YA+L+S    DP  R AA+ACL  +P T++D G WTAML  LL EAARTLKQVWPEA VPS+LL                  S  S HK G +P P                AARARIQ+ LEA   LL  GH  G+SPVLLPS  +L MCEVLL+  PRG+SNLG TPAALP TA  ALQP L + G+DLL++YL+AA +SA  +L  IA LVLR LS P     R++  ALF+QVVLVMGASAAP LVEPAL  +T  A  +L    TP +V    AA A V S  A  ++  G   T  A   G +     +   M      +VE VG A+F+ALE+A+LGCG LLSM+ R+S++++VGAGL DLNRGVPR GAA +     G+SW+RR+ PLRAAFL  A R +L+PR+DGAGSALTPLA+RV  VL LD DE VARAA+LGR VAE+I HPRAAPLFIP ALLK DEEE    G+ + S       A + +GE +    R++ G    EA++A T    SL     ++ ++AAVWSQ+T
Sbjct:    1 MALEWLTLQRLGSDEGAGAMPP----GAAYEEVYTCLKAGLLVRDEDGSNAEKLLAWVFEAGHAKTEPRARLLSFQLLPAVVEHSHPFVLSASLEKLTQLLRSAMSTASPLSCRLLAIQTVEILLVKALGPGAGTALRQQCQQECLPRLAGSLLECCAPITSSSCVAPSAANSLADAHEDTPGLGLSGPVRGSPLPVTIAAFRALAIGAQNAGTSFKSFAGKLEAASYAALDSVWGRDPGLRGAAVACLAGLPSTFTDSGRWTAMLKALLSEAARTLKQVWPEARVPSTLLSGPGGGRKGIDSSFPGTGSGGSVHKPGWAPLPARXXXXXXXXXXXXXXAARARIQSSLEAATALLNHGHSPGTSPVLLPSSAILAMCEVLLALTPRGHSNLGTTPAALPPTAHHALQPTLLALGMDLLAAYLAAAKTSALGHLRGIARLVLRLLSGPDTAPVRAQLLALFTQVVLVMGASAAPLLVEPALPEMTRLAYQYL-RASTPFVVEERAAASASVFSSPATGERTFGRDATALA---GPQTKGKRQAEGMRAPSARDVEEVGTAMFRALESAVLGCGALLSMDRRMSIDKLVGAGLCDLNRGVPRAGAATTYFGAEGMSWLRRSGPLRAAFLNFATRTMLVPRQDGAGSALTPLASRVLNVLVLDRDEDVARAAVLGRTVAESIIHPRAAPLFIPPALLKFDEEE----GYTLPSG------ARSISGEHDPRSLRRQSGPEGEEASIAMTNVVSSL-----EEGKIAAVWSQQT 748
The following BLAST results are available for this feature:
BLAST of NO13G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21845.14.800e-16048.77hypothetical protein Naga_100051g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001725NSK001725Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01750.1NO13G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596479gene_6831Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100051g24gene8599Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01750.1NO13G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01750 ID=NO13G01750|Name=NO13G01750|organism=Nannochloropsis oceanica|type=gene|length=3199bp
AAAGCCACACACGCACAGGCCGTGTAATTCTCTTCGCCGCCGCCTGCAAT
TACTGGCTGCTGTCGGAAGCGGTCAAGTAAGGATTAAAGGCACCAAAGgt
aaagctcgacctcccctagttagattctcccctcccccatttgcctaccc
ttttccaatgaatacccaaggctttttgtcaagtccgtgatgcgaatgat
ccacatgcattgggggccgatgccttggaagattagaccttataacgacc
acttgcgtgggggcttttggcacctgagtgcgcaggggtggggaggtggt
cacctcgccgtgaggcaagtttagcccttctccacgccttttttccaaga
taagtccaccgataaggtcgtcgtacaaatgaaagtattgaatgcagcat
tttgatatctaaaattcgcaatttactgaccggcgttctcacggcataga
tactccgtatccctcttatcttgtaagACACAAGCACATCACAAACATGG
CTCTAGAGTGGCTAACCCTGCACAAACTAGGCGGAGACGAGGATTCTCCG
CCCCTCTCCAACGTCTGGGCTGCTTGCGAGGAGACTCGAACATGCTTGGA
AGGTGGGTTACTACGACGCAACGAGGACGGGTCCACTGCCGAGTCTCTAC
TAGCCTGGCTTCTCGAGACTGGCCACGTAAAAAGTGTGCCTCAAGCCCGC
CTGGGTGCATTTCATCTCTTGAGTGTGGCCATAGTTCATTGCCCTGCTAC
TGTTTTGAGTGCCAATTTGGATAAACTTACGCAGCTCCTCCGTTCGGGCA
TGAGTCCTGCCTCCTCTCCTGTGTGTCGTGTTTTTGCGTGCCGGGCGGTG
GGAGCGTTGGTGGACAAGGCATGGGCGGATGGAGGAGAGATCGAACTCAA
ACAGCACGTGCAGCAAGATATCTTGTCTCGGCTAGTCACATCATTGCTTG
GATGTTGTACGGCGACGGATTCTGCTTCTTCTACTCCTACTACTGCCAAC
GACGATGACGATGACGAGGGAAATACCTCATTTACGACACGCTCAACAGC
TTTAGCAGCAAATATCGACCTCCGTGTGCATACCACTGCTCTACGTACCC
TTGCCAAGTGTGCCCACACCGTTGGGATGGGCTTCAAGTCCCACGCTGCT
AAAATGGAAGCTGCAGCCTATGCGTCCCTCAACTCCCCCTCCTCCGCCGA
CCCCTCCTTTAGGCAGGCGGCGATTGCGTGCTTGGTGCGTGTGCCATTTA
CCTATTCAGATGGAGGACATTGGACAGCGATGCTTTTGACGCTGCTGGGA
GAAGCGGCGCGTACGCTTAAGCAGGTCTGGCCTGAGGCGCATGTGCCTTC
CTCCCTCCTTCAAATGAGTAGCAGCTGTAGCAGCAGTAGCGGGAACAACA
AAATGGCAGCTAGCAGTCATGTATCTACCCATAAAATGGGATTGTCACCA
TTTCCTCCTCTCCCGGAGAAGGGGGGAGGGGCTGTTGTCAAAAGTTATGC
TTTGGCAGCAAGAGCGCGCATTCAGGCATGTCTAGAAGCAGTGGCTACCT
TGCTTACCTTTGGGCATCACCACGGAAGCAGCCCTGTCCTCCTTCCCTCC
CTTCCTCTTCTTGGGATGTGCGAAGTCTTATTATCTTCCATGCCTCGGGG
AAACTCAAACCTAGGTGCTACGCCTGCTGCTCTTCCTGCTACTGCTCTAC
AGGCGCTCCAACCTCTCCTCCGCTCCTTCGGGCTAGACCTCCTTTCGTCC
TATCTATCAGCTGCTAGTTCTTCGGCCCATCATTATTTATCCCGAATCGC
TCATTTGGTTTTGCGTGCGTTGTCATGGCCAGTCGCGCTGGGGTTTCGGT
CGAGAGCATGTGCTTTGTTTTCGCAGGTTGTGCTGGTGATGGGTGCGTCT
GCTGCTCCTTCCCTAGTCGAGCCGGCATTGCTCCTCCTCACACACCATGC
GAGTCTCCATCTTTTTTCGACAGGTACGCCTTTGCTGGTAAACAGTACCA
TGGCTGCTGCACCTGTTATTTCGGAGGGGGCAGGAAGCAAGAAGAAGAAG
GGAGGGGCGCTGACTAAGACGGCGACGGTGCGAGGGAGGGAAGGAGGGAT
GATAGGGGAGGTGCTTGAGATGGGGACACAAGGAATAGAGGAGGTGGAGA
GGGTAGGAATTGCGGTTTTTAAAGCGCTGGAGACGGCGCTGCTGGGATGT
GGACCTTTGTTGTCGATGGAGGGGCGATTGAGCCTGGAGCAAGTGGTGGG
GGCGGGGTTGAGTGATTTGAATCGCGGGGTGCCGCGACCGGGTGCTGCTG
TTTCTTCGATGTCCTTTGGAGGGATATCATGGGTACGGAGGAATGCTCCC
CTCCGCGCGGCCTTTTTGGGGTTGGCAGCCCGTGCACTGTTGATCCCGCG
GAGGGATGGGGCGGGCTCAGCATTGACTCCGTTGGCGGCTCGCGTGTTCG
GTGTGTTGTGTTTGGATTCGGACGAAGGCGTGGCACGTGCTGCTTTGCTT
GGGCGGGCAGTAGCTGAGACGATTACGCACCCTCGGGCCGCTCCTTTATT
TATTCCGGCGGCGTTGTTGAAGTTGGACGAAGAGGAGGACGTGCTTCGGG
GACATGCGATCCGGAGTGCTGAATTGAGCTTCCCTTGTGCTGCTGCTTCT
GCGGGAGAAGGCGAACGGGGAGGAGGAAGAAAAGAAGAGGGGGAAGCGGC
GGTTGCTGGTACAAAAGAGAAGCCCTCCCTGCCATTCCCGTCGATGGATA
AAACGCAGGTAGCGGCGGTGTGGTCGCAAAAGACAAGCTCGGTCATCGCC
TCCAGTGCTGTTGCTGCTGTTGCCTGCCCTGCACCCGCCGCTATTTTATT
AGCAGCAGAAGATAAGAGCAAGAAAGCGGGCTCAAAGCGCGACTTAACAT
TAGCTCGTTCCTCCTCCCCATCTAACCGCACGGACGGTGGCAAGCGGCCT
AAGTCTGCGAAAGCCGCCATGAAAACAACCGTTGCTGTCACTGCTGCCGC
AGCACAGAAGGAAGAGAAAGAGGGCGAAGAGGATGAGGAGGATGACTTGC
CGATGATTGTCGACGATGGAGGACCGGACGAGAGTGAGGAAGACTAGGGT
AGGGGATTGCAAAGTAGGAAAAGACAAAGGCACGTGTGTACAGCGTACAG
GTGACGGAAAACACACCCAATTCCAAAGTATGTATTTGTGATTTTCGGG
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protein sequence of NO13G01750.1

>NO13G01750.1-protein ID=NO13G01750.1-protein|Name=NO13G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=867bp
MALEWLTLHKLGGDEDSPPLSNVWAACEETRTCLEGGLLRRNEDGSTAES
LLAWLLETGHVKSVPQARLGAFHLLSVAIVHCPATVLSANLDKLTQLLRS
GMSPASSPVCRVFACRAVGALVDKAWADGGEIELKQHVQQDILSRLVTSL
LGCCTATDSASSTPTTANDDDDDEGNTSFTTRSTALAANIDLRVHTTALR
TLAKCAHTVGMGFKSHAAKMEAAAYASLNSPSSADPSFRQAAIACLVRVP
FTYSDGGHWTAMLLTLLGEAARTLKQVWPEAHVPSSLLQMSSSCSSSSGN
NKMAASSHVSTHKMGLSPFPPLPEKGGGAVVKSYALAARARIQACLEAVA
TLLTFGHHHGSSPVLLPSLPLLGMCEVLLSSMPRGNSNLGATPAALPATA
LQALQPLLRSFGLDLLSSYLSAASSSAHHYLSRIAHLVLRALSWPVALGF
RSRACALFSQVVLVMGASAAPSLVEPALLLLTHHASLHLFSTGTPLLVNS
TMAAAPVISEGAGSKKKKGGALTKTATVRGREGGMIGEVLEMGTQGIEEV
ERVGIAVFKALETALLGCGPLLSMEGRLSLEQVVGAGLSDLNRGVPRPGA
AVSSMSFGGISWVRRNAPLRAAFLGLAARALLIPRRDGAGSALTPLAARV
FGVLCLDSDEGVARAALLGRAVAETITHPRAAPLFIPAALLKLDEEEDVL
RGHAIRSAELSFPCAAASAGEGERGGGRKEEGEAAVAGTKEKPSLPFPSM
DKTQVAAVWSQKTSSVIASSAVAAVACPAPAAILLAAEDKSKKAGSKRDL
TLARSSSPSNRTDGGKRPKSAKAAMKTTVAVTAAAAQKEEKEGEEDEEDD
LPMIVDDGGPDESEED*
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Synonyms
Publications