NO13G01730, NO13G01730 (gene) Nannochloropsis oceanica

Overview
NameNO13G01730
Unique NameNO13G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr13:508298..510466 -

Link to JBrowse

Properties
Property NameValue
DescriptionUdp-glucose 4-epimerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:508298..510466 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: EWM21840.1 (udp-glucose 4-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 670.6 bits (1729), Expect = 2.800e-189
Identity = 320/365 (87.67%), Postives = 342/365 (93.70%), Query Frame = 0 
Query:   10 MALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKAPE 375
            MA +L FF QSQAFAG ILVTGGAGYIGSHTCCELLKAGRRIVVVDNL+NS +DS+ERVKEITGCA GALEFR LDLL+ +GL+ LFKEY+FDACIHFAGLKAVGESVSQP+RYYHNNIVGTLNLLEVM+K+KCKN VFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEE+LRDQH AD +WSILILRYFNPIGAH SGRIGEDPLGIPNNLMPF+AQVCVGRR+ LSVFG+DY TPDGTGVRDYIHVVDLAEGHVAAVDRMMEAR+E GKSLGCVPVNLGTG GVSVLELV AMR ASGKEIP KM +RRPGDVA+LYTDP FANR LKW+ATRGVK+MC+DTWRWQSRNPFGYRKAPE
Sbjct:   26 MAFMLVFFVQSQAFAGHILVTGGAGYIGSHTCCELLKAGRRIVVVDNLVNSCEDSVERVKEITGCASGALEFRNLDLLNLEGLDDLFKEYSFDACIHFAGLKAVGESVSQPLRYYHNNIVGTLNLLEVMNKYKCKNMVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEMLRDQHTADKDWSILILRYFNPIGAHESGRIGEDPLGIPNNLMPFLAQVCVGRREVLSVFGSDYPTPDGTGVRDYIHVVDLAEGHVAAVDRMMEARSECGKSLGCVPVNLGTGRGVSVLELVKAMRDASGKEIPIKMTDRRPGDVAALYTDPAFANRFLKWQATRGVKDMCDDTWRWQSRNPFGYRKAPE 390
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: XP_005712641.1 (UDP-glucose 4-epimerase [Chondrus crispus] >CDF32840.1 UDP-glucose 4-epimerase [Chondrus crispus])

HSP 1 Score: 475.3 bits (1222), Expect = 1.800e-130
Identity = 231/346 (66.76%), Postives = 273/346 (78.90%), Query Frame = 0 
Query:   27 ILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKA 373
            ILVTGGAGYIGSHT  EL+++G ++VVVDNL NS ++SL RV  ITG  P  + FR++DLLD   LE +F E++F ACIHFAGLKAVGESV QP+RYYHNN+ GTLNLL ++ KH CKNFVFSSSATVYG  +++P+TED ++ ATNPYGRTKLFIEE LRD HKAD+EW+ILILRYFNP GAH SG+IGEDP GIPNNLMP+VAQV VGRR+ L+VFG DY TPDGTGVRDYIHVVDLA+GHVAA+D++ +         GCV VNLGTG G SVL+++  M  A G+E+  K A RR GDV+ LY DP FA   L W+A  GV+EMC DTWRWQS NP GY KA
Sbjct:    6 ILVTGGAGYIGSHTVLELVQSGHKVVVVDNLDNSSEESLIRVGNITG-KPELIVFRKVDLLDFADLEAVFTEFSFFACIHFAGLKAVGESVQQPIRYYHNNLTGTLNLLNLLTKHDCKNFVFSSSATVYGMVKEMPVTEDAQIGATNPYGRTKLFIEEFLRDLHKADSEWNILILRYFNPCGAHASGQIGEDPTGIPNNLMPYVAQVAVGRREHLTVFGMDYPTPDGTGVRDYIHVVDLAKGHVAALDKIPQ-------KPGCVSVNLGTGKGFSVLDMLKGMSKACGRELQHKEAPRREGDVSILYADPKFAREFLGWEAKLGVEEMCADTWRWQSGNPNGYGKA 343
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: GAX25095.1 (UDP-glucose 4-epimerase [Fistulifera solaris])

HSP 1 Score: 473.8 bits (1218), Expect = 5.100e-130
Identity = 227/354 (64.12%), Postives = 274/354 (77.40%), Query Frame = 0 
Query:   27 ILVTGGAGYIGSHTCCELLK---AGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEY-TFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKAPEAM 377
            +LVTGGAGYIGSHTC ELL+   A  R+VVVDNL NS ++SL RV+E+    P  L FR+ D+ DK  L  +F+E+    +CIHFAGLKAVGESV++P+ YY  NI GT++LLE++ + + + FVFSSSATVYG+PE LP+ E  RLQATNPYGRTKLFIEEILRD H AD +W +LILRYFNPIGAHPSGRIGEDP GIPNNLMP++AQVCVGRR+ L+VFGNDY TPDGTGVRDYIHVVDLA+GHVAA+D++       G+ +GC  VNLGTG GVSVL+LV  M  A+GK +P ++  RRPGDVA++Y D   A   L WKA  GVKEMC+DTWRWQS NP GY+   E +
Sbjct:   35 VLVTGGAGYIGSHTCLELLQDKDAQYRVVVVDNLENSSKESLRRVQELVQTDPNRLVFRQCDIRDKACLVAVFEEFPQISSCIHFAGLKAVGESVAKPLAYYDANIGGTVHLLELLQERQVRKFVFSSSATVYGEPEMLPLVETARLQATNPYGRTKLFIEEILRDLHAADPDWQVLILRYFNPIGAHPSGRIGEDPQGIPNNLMPYIAQVCVGRREKLTVFGNDYDTPDGTGVRDYIHVVDLAKGHVAALDKLYRVDDNAGEPVGCRAVNLGTGQGVSVLQLVQGMTEATGKPVPYEVGPRRPGDVATVYADASVAETFLGWKAELGVKEMCQDTWRWQSTNPNGYQVQEETI 388
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: GAX18507.1 (UDP-glucose 4-epimerase [Fistulifera solaris])

HSP 1 Score: 468.4 bits (1204), Expect = 2.100e-128
Identity = 230/376 (61.17%), Postives = 280/376 (74.47%), Query Frame = 0 
Query:    5 RCPYFMALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLK---AGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEY-TFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKAPEAM 377
            RC +++    ++          +LVTGGAGYIGSHTC ELL+   A  R+VVVDNL NS ++SL RV+E+    P  L FR+ D+ DK  L  +F+E+    +CIHFAGLKAVGESV++P+ YY +NI GT+NLLE++ + + + FVFSSSATVYG+PE LP+ E  RLQATNPYGRTKLFIEEILRD H AD +W ILILRYFNPIGAHPSGRIGEDP GIPNNLMP++AQVCVGRR+ L+VFGNDY TPDGTGVRDYIHVVDLA+GHVAA+D++        + +GC  VNLGTG GVSVL+LV  M  A+GK +P  +  RRPGDVA++Y D   A   L WKA  GVKEMC+DTWRWQS NP GY+   E +
Sbjct:   13 RCLFYLIFGFSWAMALATPQRTVLVTGGAGYIGSHTCLELLQDKDAQYRVVVVDNLENSSKESLRRVQELVQTDPERLVFRQCDIRDKACLTSVFEEFPQISSCIHFAGLKAVGESVAKPLAYYDSNIGGTVNLLELLQERQVRKFVFSSSATVYGEPEMLPLVETARLQATNPYGRTKLFIEEILRDVHAADPDWQILILRYFNPIGAHPSGRIGEDPQGIPNNLMPYIAQVCVGRREKLTVFGNDYDTPDGTGVRDYIHVVDLAKGHVAALDKLYR------EPVGCKAVNLGTGHGVSVLQLVQGMAEATGKPVPYDVGPRRPGDVATVYADASVAETFLGWKAELGVKEMCQDTWRWQSTNPNGYQVQEETV 382
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: OSX71241.1 (hypothetical protein BU14_0574s0012 [Porphyra umbilicalis])

HSP 1 Score: 463.8 bits (1192), Expect = 5.300e-127
Identity = 221/349 (63.32%), Postives = 271/349 (77.65%), Query Frame = 0 
Query:   24 AGQILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKA 373
            A  +LVTGGAGYIGSHT  EL+  G   VVVDNL NS ++SL+RV E+TG     + FR +DLL+++ LE +FKE+TF ACIHFAGLKAVGESV  P++YYHNN+ GTL LL ++DK+ CKNFVFSSSATVYG  +++P+ ED  + ATNPYGRTKLFIEE LRD  +A  EW+ILILRYFNP+GAH SGRIGEDP GIPNNLMP++AQV VGRR+ LS+FG+DY T DGTGVRDYIHVVDLA+GHVAA++++ +      + +GC  VNLGTG G SVL+++  M  A G+E+P KMA RR GDV+ LY DP FA   L W+A  GV+EMCE TW+WQS NP GY+ A
Sbjct:    3 AKTVLVTGGAGYIGSHTVLELVNEGFTAVVVDNLDNSSEESLKRVSELTG-KSDQIVFRHVDLLNEEALEAVFKEFTFSACIHFAGLKAVGESVKLPLKYYHNNLTGTLILLNLLDKYGCKNFVFSSSATVYGLVKEMPVLEDAEIGATNPYGRTKLFIEEFLRDLSRAQEEWNILILRYFNPVGAHESGRIGEDPSGIPNNLMPYIAQVAVGRREHLSIFGDDYPTKDGTGVRDYIHVVDLAKGHVAALEKLTD------EKVGCKSVNLGTGKGYSVLDMLNGMSKACGRELPYKMAPRREGDVSVLYADPAFAKSFLGWEAKLGVEEMCESTWKWQSNNPNGYKTA 344
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: CBJ29580.1 (galactose-4-epimerase, UDP [Ectocarpus siliculosus])

HSP 1 Score: 462.6 bits (1189), Expect = 1.200e-126
Identity = 224/366 (61.20%), Postives = 274/366 (74.86%), Query Frame = 0 
Query:   10 MALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHK-CKNFVFSSSATVYGDPEKLPITEDQRLQA--TNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTK--MAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYR 371
            +AL +       AFA ++LVTGGAGYIGSHTC EL+KAG ++VVVD+L N+V++SL RV+E+T C    L FR+++LLD+  LE +F +Y FD+C+HFAGLKAVGESV++P+ YY NNI GTLNL+E M K   C+  VFSSSATVYG+P+KLP+ E   +    TNPYGRTK  IEEILRD  K+D  W IL+LRYFNPIGAH SGR+GEDP GIPNNLMPFVAQVCVGRR+ LSVFG+DY TPDGTGVRDYIHV+DLAEGHVAAV ++ E+        GC  VNLGTG G SV+++V  M  A G  IP K  +  RR GDV ++Y DP  A  +L W A RG+K+MC DTWRWQS +P GY+
Sbjct:   19 LALGVTNVRPGMAFAARVLVTGGAGYIGSHTCVELIKAGEKVVVVDDLSNAVEESLNRVRELTKCDDDQLVFRKVNLLDQPALESVFNDYEFDSCVHFAGLKAVGESVAKPLLYYRNNIEGTLNLVECMQKQPGCRKLVFSSSATVYGEPDKLPLDESSSVGVGITNPYGRTKYMIEEILRDMSKSDPSWDILLLRYFNPIGAHESGRMGEDPEGIPNNLMPFVAQVCVGRREFLSVFGDDYGTPDGTGVRDYIHVMDLAEGHVAAVRKLRES------CTGCAAVNLGTGSGYSVMDVVKGMEEACGNPIPYKEQVMPRRAGDVEAMYADPSLAKSMLGWTAKRGLKDMCTDTWRWQSAHPNGYK 378
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: XP_002185705.1 (UDP-glucose 4-epimerase [Phaeodactylum tricornutum CCAP 1055/1] >ACI65175.1 UDP-glucose 4-epimerase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 459.1 bits (1180), Expect = 1.300e-125
Identity = 222/354 (62.71%), Postives = 272/354 (76.84%), Query Frame = 0 
Query:   20 SQAFAGQILVTGGAGYIGSHTCCELLKAGR-RIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEY-TFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRK 372
            ++A    +LVTGGAGYIGSHTC ELL++   ++VV+DNL NS ++S++RV+++T C    L FR  D+ D++ L+ +  E+    +CIHFAGLKAVGESVS+P+ YY  N+ GT+ LLE ++    KNFVFSSSATVYG+PE LP+ E  RLQATNPYGRTKLFIEEILRD H +D  W+ LILRYFNPIGAHPSG+IGEDP GIPNNLMPFVAQVCVGRR+ LSVFG+DY TPDGTGVRDYIHVVDLA+GHVAA++++          +GC  VNLGTG GVSVLELV  M  A+GK +P +++ RRPGDVA++Y D   A  LL WKA  GV  MCEDTWRWQS NP GY++
Sbjct:    2 NRAIFRTVLVTGGAGYIGSHTCLELLESKTYKVVVIDNLDNSSEESIKRVQQLTACGKDDLVFRNCDIRDRRRLKAVLDEFPNISSCIHFAGLKAVGESVSKPLMYYDCNVGGTVQLLEQLNNKGIKNFVFSSSATVYGEPEMLPLVETARLQATNPYGRTKLFIEEILRDCHASDDSWNTLILRYFNPIGAHPSGKIGEDPQGIPNNLMPFVAQVCVGRREKLSVFGDDYDTPDGTGVRDYIHVVDLAKGHVAALEKLY------SDQVGCRAVNLGTGQGVSVLELVKGMGKATGKAVPYEISPRRPGDVATVYADASLAQELLGWKAELGVDAMCEDTWRWQSTNPNGYQQ 349
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: WP_009103664.1 (UDP-glucose 4-epimerase GalE [Rhodopirellula sp. SWK7] >EMI41178.1 UDP-glucose 4-epimerase [Rhodopirellula sp. SWK7])

HSP 1 Score: 458.4 bits (1178), Expect = 2.200e-125
Identity = 226/344 (65.70%), Postives = 262/344 (76.16%), Query Frame = 0 
Query:   26 QILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGY 370
            +ILVTGGAGYIGSHT  ELL  G  +VVVDNL NS ++SL RV E+TG    + EF ++DLLD++ L+ +F     D+ IHFAGLKAVGESV  P+RYY NNI G+LNL EVM KH  KN VFSSSATVYGDP  +PITED  L ATNPYGRTKL +EEI RD   +D+ W+I +LRYFNP+GAH SGRIGEDP GIPNNLMPFVAQV VGRR  LSVFGNDY T DGTGVRDYIHVVDLA GHV AVD++         + G V  NLGTG+G SVLE+VA+   ASGK++PTK+ ERRPGDVA+ Y DP +A + L WKATR V +MC DTWRWQS+NP GY
Sbjct:    2 KILVTGGAGYIGSHTVLELLNEGHEVVVVDNLDNSSEESLRRVAELTG---KSAEFHKIDLLDEEALDKVFSGAGIDSVIHFAGLKAVGESVQIPLRYYQNNITGSLNLCEVMIKHNVKNLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLMLEEIFRDLSVSDSSWNIALLRYFNPVGAHSSGRIGEDPSGIPNNLMPFVAQVAVGRRPELSVFGNDYPTVDGTGVRDYIHVVDLAVGHVRAVDKLT-------SNPGVVTYNLGTGNGCSVLEMVASFEKASGKKVPTKIVERRPGDVAACYADPTYAEKELGWKATRTVDDMCVDTWRWQSQNPTGY 335
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: EMI53947.1 (UDP-glucose 4-epimerase [Rhodopirellula sallentina SM41])

HSP 1 Score: 458.4 bits (1178), Expect = 2.200e-125
Identity = 227/347 (65.42%), Postives = 262/347 (75.50%), Query Frame = 0 
Query:   23 FAGQILVTGGAGYIGSHTCCELLKAGRRIVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYTFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGY 370
            F  +ILVTGGAGYIGSHT  ELL  G  ++VVDNL NS ++SL RV+E+TG     +EF ++DLLD   L+ +F     D+ IHFAGLKAVGESV  P+RYYHNNI G+LNL EVM KH  KN VFSSSATVYGDP  +PITED  L ATNPYGRTKL +EEI RD   +D  W+I +LRYFNP+GAH SGRIGEDP GIPNNLMPFVAQV VGRR  LSVFGNDY TPDGTGVRDYIHVVDLA GHV AVD++         + G V  NLGTG+G SVLE+VA+   ASGK++P K+ +RRPGDVAS Y DP FA + L WKATR V +MC DTWRWQS+NP G+
Sbjct:   28 FPMKILVTGGAGYIGSHTVLELLNEGHEVIVVDNLDNSSKESLRRVEELTG---KKVEFHKVDLLDFDALDKVFSGRGVDSVIHFAGLKAVGESVQIPLRYYHNNITGSLNLCEVMIKHDVKNLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLMLEEIFRDLSVSDNSWNIALLRYFNPVGAHSSGRIGEDPSGIPNNLMPFVAQVAVGRRPELSVFGNDYPTPDGTGVRDYIHVVDLAVGHVRAVDKLT-------SNPGVVTYNLGTGNGCSVLEMVASFEKASGKKVPIKIVDRRPGDVASCYADPTFAEKELGWKATRTVDDMCADTWRWQSQNPSGF 364
[Close]
BLAST of NO13G01730 vs. NCBI_GenBank
Match: XP_002295981.1 (UDP-glucose 4-epimerase; uridine diphosphoglucose epimerase; uridine diphosphate galactose 4-epimerase, partial [Thalassiosira pseudonana CCMP1335] >ACI64698.1 UDP-glucose 4-epimerase; uridine diphosphoglucose epimerase; uridine diphosphate galactose 4-epimerase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 458.0 bits (1177), Expect = 2.900e-125
Identity = 227/363 (62.53%), Postives = 270/363 (74.38%), Query Frame = 0 
Query:   27 ILVTGGAGYIGSHTCCELLKAGR-RIVVVDNLINSVQDSLERVKEITGCAPGA------------LEFRELDLLDKKGLEGLFKEY-TFDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSSSATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQH-KADAEWSILILRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYATPDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGVSVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRGVKEMCEDTWRWQSRNPFGYRKAPE 375
            +LVTGG GYIGSHTC ELL   R R+VV+DNL NS ++SL RVK++   A  +            L FR  D+ D  GL+ + +E+ T  +C+HFAGLKAVGESVS+P+ YY+ N+ GT  LL+ + +HK K+FVFSSSATVYG+PE LP+ E  RL ATNPYGRTKLFIEEILRD +     EW+ILILRYFNPIGAH SGR+GEDP GIPNNLMPF+AQVCVGRR+ LSVFG+DY TPDGTGVRDYIHVVDLA+GHVAA+D++         ++GC  VNLGTG GVSVLELV  M AA+GK +P +MA RRPGDVA LY DP  A  +  W A+ G KEMCEDTWRWQS NP GYR+  E
Sbjct:    3 VLVTGGTGYIGSHTCLELLSTNRYRVVVIDNLENSSEESLNRVKQLLADAATSECQQVAENINDRLHFRNCDIRDSDGLQSILQEFPTISSCVHFAGLKAVGESVSKPLEYYNVNVGGTTTLLQQLQQHKVKHFVFSSSATVYGEPEMLPLKEHARLTATNPYGRTKLFIEEILRDLYASCSEEWNILILRYFNPIGAHESGRMGEDPQGIPNNLMPFIAQVCVGRREKLSVFGDDYDTPDGTGVRDYIHVVDLAKGHVAALDKLY-----SDDNVGCEAVNLGTGKGVSVLELVDGMGAATGKPVPYEMAPRRPGDVAQLYADPEKARTMFGWSASLGTKEMCEDTWRWQSTNPMGYREVVE 360
The following BLAST results are available for this feature:
BLAST of NO13G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21840.12.800e-18987.67udp-glucose 4-epimerase [Nannochloropsis gaditana][more]
XP_005712641.11.800e-13066.76UDP-glucose 4-epimerase [Chondrus crispus] >CDF328... [more]
GAX25095.15.100e-13064.12UDP-glucose 4-epimerase [Fistulifera solaris][more]
GAX18507.12.100e-12861.17UDP-glucose 4-epimerase [Fistulifera solaris][more]
OSX71241.15.300e-12763.32hypothetical protein BU14_0574s0012 [Porphyra umbi... [more]
CBJ29580.11.200e-12661.20galactose-4-epimerase, UDP [Ectocarpus siliculosus... [more]
XP_002185705.11.300e-12562.71UDP-glucose 4-epimerase [Phaeodactylum tricornutum... [more]
WP_009103664.12.200e-12565.70UDP-glucose 4-epimerase GalE [Rhodopirellula sp. S... [more]
EMI53947.12.200e-12565.42UDP-glucose 4-epimerase [Rhodopirellula sallentina... [more]
XP_002295981.12.900e-12562.53UDP-glucose 4-epimerase; uridine diphosphoglucose ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01730.1NO13G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596490gene_6833Nannochloropsis oceanica (N. oceanica CCMP1779)gene
UGEgene8593Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01730.1NO13G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01730 ID=NO13G01730|Name=NO13G01730|organism=Nannochloropsis oceanica|type=gene|length=2169bp
TCCGCCCATGGTAGCTAGTGCTGTCCGTAAGAGTGTTGGTATGGGTGTTT
AGGCTCCAGAAGCTGCCTCCTGGAAGGCGAGGGGATTATGATAGAGAGCC
AAGACGACAACTTTGTGCAGGGCTTTCTCGCTTGACTTGTACAACAGACA
TGCTACGCATGCAGGCCAAGAAAGAAATCACTCCGTATGCTGCGCAGGTG
TCTGCGGATATGCGAAAGGAGGACAGAGCGTGTGCAACAAAAGGGCACAA
GCAGCAAGCACACGCCTCTCTCGTGAGAGCGGGAGAGGGAGAGAGAGACA
CCGAGACTACTGAAGGCAGCTGATCAAAGCTGATGGCTCCCCTCATGCAT
CAAGCATGTGAACACCCTGCCAACACCTCAAACGAATTTCTGACGAGCCA
AAAACTGACCCAATCCTTTCTGTGCATTTCAAGACAGGTGCGTTTTGGCC
AGGCCGGCAGCCATTATTATTGCATTTCCTCCACACCACCCCAACCGACC
CAACGCAGCATCAACAGCAATCATGGGGTCGACGCGATGTCCCTATTTCA
TGGCCTTGATACTGGCGTTTTTCGCTCAGTCCCAAGCTTTTGCTGGACAA
ATCCTTGTGACAGgtacgtgtggcaagtagttgcgccgtaatggtttttt
ttgtcatcttcatttccttccatccatagacggtgacgtacgtccctacc
tgtgtgtagagcggacctccttccccctctccctgtcccaccttcatcct
tctgcccctccccgcttgttcgcctggaaatttagtacagtgttctagag
acgtcaaatttatctctgtctccccccgaaaaaagGCGGAGCGGGCTACA
TTGGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGCATCGTC
GTCGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACGTGTCAA
GGAAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAATTGGACC
TACTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACGTTTGAT
GCTTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGTGAGCCA
GCCAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATTTGTTAG
AGGTTATGGATAAGCACAAgtaagtacttgtggaagggaaggaaggggag
ggatggaggaagcaagggaagggatgaggctaatttaatatattcgatga
ttagtgaactagattcacataccatctcgtctccccgctactcctttctc
accctagATGCAAAAACTTTGTATTCTCTTCCTCCGCCACCGTCTACGGG
GATCCCGAAAAGCTGCCAATCACCGAAGACCAACGCCTGCAAGCCACCAA
TCCCTACGGCCGCACCAAGCTCTTCATCGAAGAAATCCTCCGCGACCAGC
ATAAAGCAGACGCAGAATGGTCCATTCTCATCCTGCGGTATTTTAACCCC
ATCGGCGCTCACCCCTCAGGGAGGATAGGCGAAGACCCTTTAGGTATCCC
TAATAACCTCATGCCTTTTGTCGCACAAGTCTGTGTCGGACGCCGTGATG
CCCTCAGTGTGTTTGGTAATGACTATGCGACCCCAGACGGCACCGGAGTA
AGAGATTATATTCACGTGGTGGACCTCGCGGAAGGCCACGTGGCTGCTGT
GGATAGGATGATGGAGGCAAGGGCGGAGGGGGGAAAGAGTCTCGGCTGTG
TGCCAGTCAACCTGGGGACGGGGGATGGCGTGAGTGTATTGGAGTTGGTG
GCTGCTATGAGGGCGGCAAGTGGGAAGGAAATTCCAACAAAAATGGCTGA
GAGGAGGCCGGGGGATGTGGCGTCTCTGTACACGGACCCCGGTTTTGCGA
ATCGGCTTCTGAAATGGAAGGCGACAAGGGGGGTGAAGGAAATGTGTGAG
GACACTTGGCGGTGGCAGAGCCGGAATCCATTTGGGTATCGCAAGGCGCC
TGAGGCGATGGGGACGTCAAAATCGTAATGTGAAGGGATGGGGTAGGAAA
CATCAGAATTAGCTTATGACCTGAACTGTGGGGGCCAAAATGAAAGGATC
CCTCACAACGCATGAAGACTCGGAGACAGAAACTGGGGGGAAAAAAGAAA
TAAAAAGATATCAGATGTT
back to top

protein sequence of NO13G01730.1

>NO13G01730.1-protein ID=NO13G01730.1-protein|Name=NO13G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MGSTRCPYFMALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRR
IVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYT
FDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSS
SATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILI
LRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYAT
PDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGV
SVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRG
VKEMCEDTWRWQSRNPFGYRKAPEAMGTSKS*
back to top
Synonyms
Publications