NO13G01650, NO13G01650 (gene) Nannochloropsis oceanica

Overview
NameNO13G01650
Unique NameNO13G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2370
Alignment locationchr13:489058..491427 -

Link to JBrowse

Properties
Property NameValue
DescriptionCilia- and flagella-associated protein 45
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:489058..491427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033253CFAP45
Homology
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BLAST of NO13G01650 vs. NCBI_GenBank
Match: CBJ29082.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 103.6 bits (257), Expect = 1.800e-18
Identity = 118/358 (32.96%), Postives = 161/358 (44.97%), Query Frame = 0 
Query:  125 EKRNEGLDMCKYLNGLAAQAEAFMLRDRQLEDKAQAVAHEKVYQAEMDQRMAMAWQIKTDRNQVEQAQXXXXXXXXXXXXAAQIRDXXXXXXXXXEARKQEGMALRAQFQKYQDEKAKALREKQAHVTQLRQDVLRANAEAVLSRHEAEEQEKAKMNELLSYQRRKDAEFQLREQEERARAHAKKVWQAQLFAQQELAQSNEAKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQAAAKKTQALADAEVEREQLEACQRRAAEMLARERAEQAHKTRLNKANLNYLKQQVQEAEARRRASRANKFLEGHRLKQEAAAELTNLDAFRNRLIADLEAKGVAPKYLTRIR 483
            EK +   D+ K LN L A+A AF +RD+QL +K +    EKVY   MD  M +       +   E+                QI           EAR+QE  A+    Q+Y DE      +K   V Q R  V+ AN  A+  R  A ++E  ++  +L+YQ  KD E +LR                     Q      +A++          XXXXXXXXXXXXXXXXXX           R               E  + EA  R  A +  RER E   K      + + +  QVQEAEA+R+A RA KF EG RLKQE   E   L+A R++++ D+E +G+ PKYLT ++
Sbjct:  147 EKLDANNDLVKMLNSLGARAAAFTIRDKQLAEKDRREGSEKVYDERMDMIMELDRLKDLTKRDAEEQAKKSKRVEDRKVITEQIEARQRAKLIRLEAREQENRAMLGVIQRYADEDKATAEKKAIEVRQARAAVMAANEAAIEMRRSARQREVEEVESILAYQAMKDEEMRLRXXXXXXXXXXXXXXXXXXXXXQLRDMDKQAELDELRARRAAEXXXXXXXXXXXXXXXXXXKDVTQLQADRKRXXXXXXXXXXXXXXXEEGEYEAAVRYNATLSERERRESEAKHAACMEHRSAILLQVQEAEAKRKADRAAKFEEGRRLKQEYTMERAKLEAMRDKMVEDMEKRGINPKYLTEMK 504
The following BLAST results are available for this feature:
BLAST of NO13G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29082.11.800e-1832.96conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001710NSK001710Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01650.1NO13G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631823gene_6842Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01650.1NO13G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01650 ID=NO13G01650|Name=NO13G01650|organism=Nannochloropsis oceanica|type=gene|length=2370bp
CTCCGAGTTTCTCTGCTTATTTCGTACACGCGTCTCGCCGCTTTTTTCCC
ACGTACTACACACGTTCATACCCTGTCAACACCACAGGAAAAATATGCCG
TCCCGTCCGCACGTCTACCAAGCCATCCTTTCGCAGCCGGTGGATCCCAC
CCTTTTCGGGGTGCGTCGCCGTGGCCGCCACTCTAATGGTAACGGCCCTC
GAGCGTCCTCCTCGACGAGCAACCCTCAAGTTGTCCTGGCTGCTTCGCAA
CTGGAAAGAATCCAAAAGCGTTCTTTGCTCCAAACCGATGCCGAGCCATA
TGAAGACAGGGACCGCAGCAACTACCATCATCAAGGGCAAAAAACTACCG
CAGAACGCCGGGCCAAAATGCTGGCGCTGGCTGCTTTGGCCGAGGAGCAA
AGCCACTCCGACAATGGGGATGAGGACGCGAAAACTGCTGTCATTGTGTG
CTTGGCCCGTGCCTGTGAGAAGCGGAACGAAGGGCTGGACATGTGCAAAT
ATTTGAATGGGCTGGCGGCTCAGGCCGAGgtaggtgggtggtggccggca
gaggattcaaaagtgaatggaggccaatagggataaacggatagaaatgg
ccaatcgtcattatgtcactacatttacgatgattcgcttgatctacttt
gtggtattatgcctgatggttcataaaatcagcctcacgtatgtccaaac
aaaacgctttcacatacgccctccaagGCTTTCATGTTGCGCGACCGACA
GCTGGAGGACAAGGCTCAGGCGGTGGCGCACGAAAAGGTGTACCAAGCAG
AGATGGATCAACGTATGGCAATGGCATGGCAGATAAAGACAGATCGAAAT
CAGGTTGAACAAGCTCAACTGGTTACCACTAAGCAGCAGGCACGCGAAGC
CTTGGCAGCGCAGATTAGGGATAGGGAGCACCAAAATCTTTTGGCCGAAG
AGGCGCGCAAGCAGGAGGGTATGGCTTTGCGTGCCCAATTTCAAAAATAT
CAAGATGAGAAAGCCAAGGCCCTACGTGAGAAACAGGCGCATGTGACCCA
GCTCCGACAGGATGTACTCCGGGCGAATGCCGAGGCTGTCCTCTCACGGC
ACGAAGCTGAAGAGCAAGAGAAGGCGAAGATGAACGAGCTGTTGTCGTAC
CAGCGACGTAAGGACGCCGAATTTCAACTTCGCGAGCAGGAAGAAAGAGC
CCGTGCCCATGCTAAGAAGGTATGGCAAGCCCAGTTGTTTGCGCAGCAAG
AACTGGCGCAGTCTAACGAGGCAAAAATGGAGGAACGACGTGCCCGCCAG
GCTGCCCAGCAAAAGGAGCGGGCCGCGCGCCTACACGAAGAGCAAGAGGC
CCTGCGCCGAAAACAAGAGAGTTTGGCGCTCAAGGATGATCTTCTCCGTC
AGGCTGCCGCAAAGAAAACGCAAGCCCTCGCAGACGCGGAGGTAGAGCGC
GAACAACTTGAAGCGTGCCAGCGACGAGCCGCCGAGATGCTTGCACGGGA
GAGAGCGGAGCAAGCGCACAAGACACGCTTGAATAAGGCTAATTTGAATT
ATTTGAAGCAACAAGTCCAAGAGGCCGAGGCGCGCCGACGGGCATCCCGC
GCAAATAAGTTTTTGGAAGGTCATAGGCTAAAGCAGGAAGCAGCAGCGGA
GCTCACGAATTTGGATGCGTTCCGAAATCGATTGATTGCGGATCTTGAGG
CCAAGGGCGTGGCGCCCAAGTATCTGACGCGCATACGCCGGCAAAGGCTT
GGACCGGCGGCGAGTTAGGGAAACGCTTTTTTTAGTTGCGGGTATTGCGA
GGTCGTGAGGGGGGCTTGGCCATGAAATTGGGATTACCATACACATAAAT
CGAGAGAAGAAAAAGGACTGTTCATCAACAATGGTAGTACTCGATTCTTG
GAAACTCCCTGAGGATGGCTTTTTCTCATCTCACTTTAAATGGATAAAAA
TTAAACAAAAGAGCAGGCACTGGCAGGAGGTTGAATTTTTCGAAATCCCT
GTATACGTAAACTGCTTCTGTTCGTGATCCTTCCATCGCACAAGTGCCGC
GGCCTCTAAGGTCACCCAACCCAAACCCACAGTAACAACGTGCTGTCTCA
TTAAGGTAGTACTCTTATCTGCTTTTGCATGCAGATGCGCTCAAGTCGTC
CCCAAGCAATTCGCAAAGAGGGCATTCGTCCCTCACGAGTCAGTTGTTGC
CAGAGGGACGCACTCTCACAACTGCTGATGAAGTCTAGAGGAGACAAGCC
CAATGATTTTTTCCATCACCCGCACTCCCTCACCACAGTGCTACGGATGT
AGTCTTTATGGCCGTGCCTTGGTGGTGCATCGAGCGCCGCAGCTCCTCAA
AATGCCATAGCTAATCGCGC
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protein sequence of NO13G01650.1

>NO13G01650.1-protein ID=NO13G01650.1-protein|Name=NO13G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MPSRPHVYQAILSQPVDPTLFGVRRRGRHSNGNGPRASSSTSNPQVVLAA
SQLERIQKRSLLQTDAEPYEDRDRSNYHHQGQKTTAERRAKMLALAALAE
EQSHSDNGDEDAKTAVIVCLARACEKRNEGLDMCKYLNGLAAQAEAFMLR
DRQLEDKAQAVAHEKVYQAEMDQRMAMAWQIKTDRNQVEQAQLVTTKQQA
REALAAQIRDREHQNLLAEEARKQEGMALRAQFQKYQDEKAKALREKQAH
VTQLRQDVLRANAEAVLSRHEAEEQEKAKMNELLSYQRRKDAEFQLREQE
ERARAHAKKVWQAQLFAQQELAQSNEAKMEERRARQAAQQKERAARLHEE
QEALRRKQESLALKDDLLRQAAAKKTQALADAEVEREQLEACQRRAAEML
ARERAEQAHKTRLNKANLNYLKQQVQEAEARRRASRANKFLEGHRLKQEA
AAELTNLDAFRNRLIADLEAKGVAPKYLTRIRRQRLGPAAS*
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Synonyms
Publications