NO13G01500, NO13G01500 (gene) Nannochloropsis oceanica

Overview
NameNO13G01500
Unique NameNO13G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3034
Alignment locationchr13:448817..451850 +

Link to JBrowse

Properties
Property NameValue
DescriptionPleckstrin g-interacting region: mechanosensitive ion channel
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:448817..451850 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO:0035556intracellular signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR000591DEP_dom
Homology
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BLAST of NO13G01500 vs. NCBI_GenBank
Match: XP_005853546.1 (pleckstrin g- interacting region: mechanosensitive ion channel, partial [Nannochloropsis gaditana CCMP526] >EKU22815.1 pleckstrin g- interacting region: mechanosensitive ion channel, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.8 bits (395), Expect = 3.400e-34
Identity = 87/151 (57.62%), Postives = 103/151 (68.21%), Query Frame = 0 
Query:   22 TGRRRARGRGQCYEPVYVEEVAAHMYLALEIRNRKKPKTKTILPSCFIGGEAVSWIHNKGYASSRGEATRLGDEMIALGFVRAVDE--SASFERKR---GGRKRGDKEEAVKHMVDAYLLYEFTCDVEDAAWREGGLPLSSSPSSFSFPSL 168
            T RR+ RG  Q Y P Y+ E+A  MYL LEIR+RK PK+K +LPSCFIGGEAVSW+H KG+A+SR EA RLGDEMIALG V+ + +  +   ER R   GGR  G  +  +  M D+Y LY FTCDVEDAA    GLPL  SPSS  FP L
Sbjct:    8 TSRRQLRGGRQIYPPAYIRELAYLMYLGLEIRDRKVPKSKVVLPSCFIGGEAVSWLHIKGHAASRAEALRLGDEMIALGLVQTLADVKTERLERPRAGPGGRSSG--KHPLPSMHDSYRLYHFTCDVEDAACEGLGLPL-PSPSSLRFPPL 155
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BLAST of NO13G01500 vs. NCBI_GenBank
Match: EWM19979.1 (hypothetical protein Naga_102507g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 102.1 bits (253), Expect = 1.000e-17
Identity = 60/136 (44.12%), Postives = 74/136 (54.41%), Query Frame = 0 
Query:  484 ARCQACGAEVARLLEAIDAHEPRCRGIRGGGKGEGVKSMSQSPVNTTRIIYRTAHSLSSPSPSPLLPSIPRPRPLPRVWEACLLQDSFFDSSEEALYVYEISVRHTRVEGGPPATHTPAEVLLLLYVLRPLRRERG 620
            ARC +C  EV R +EA++AHE  C G  G   G   KS       T RI+YR +                  R   + WEAC+LQDSF D    A+++YE+SVRH RVEG P   H P EVL++LYV RPL R RG
Sbjct:   87 ARCHSCRGEVVRTMEAMEAHEAACNGEGGRYGGRERKSPWTRSQGTPRILYRRSSPPLXXXXXXXXXXXXXARQ-SKPWEACVLQDSFVDREGGAVFLYEMSVRHGRVEGSP--GHAPVEVLVVLYVARPLARPRG 219
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BLAST of NO13G01500 vs. NCBI_GenBank
Match: EWM21816.1 (hypothetical protein Naga_100431g7, partial [Nannochloropsis gaditana])

HSP 1 Score: 95.1 bits (235), Expect = 1.200e-15
Identity = 62/126 (49.21%), Postives = 76/126 (60.32%), Query Frame = 0 
Query:   96 MIALGFVRAVDE--SASFERKR---GGRKRGDKEEAVKHMVDAYLLYEFTCDVEDAAWREGGLPLSSSPSSFSFPSLSSFTARLQAGGERGRVRGRKRWAFPAHTAHNSLVLDMALAREIEEAFAF 217
            MIALG V+ + +  +   ER R   GGR  G  +  +  M D+Y LY+FTCDVEDAA    GLPL  SPSS  FP L   T     G     +   +RWAFPA TAHNSL+LDM LA+E+E AFA+
Sbjct:    1 MIALGLVQTLADVKTERLERPRAGPGGRSSG--KHPLPSMHDSYRLYQFTCDVEDAACEGLGLPL-PSPSSLRFPPLPPST-----GPAEAPLGLSQRWAFPARTAHNSLILDMGLAKEMEAAFAW 118
The following BLAST results are available for this feature:
BLAST of NO13G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853546.13.400e-3457.62pleckstrin g- interacting region: mechanosensitive... [more]
EWM19979.11.000e-1744.12hypothetical protein Naga_102507g1, partial [Nanno... [more]
EWM21816.11.200e-1549.21hypothetical protein Naga_100431g7, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001745NSK001745Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01500.1NO13G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672302gene_6857Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100431g7gene8616Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01500.1NO13G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01500 ID=NO13G01500|Name=NO13G01500|organism=Nannochloropsis oceanica|type=gene|length=3034bp
ATGGCCAGCTCCGCCTCCCGCATTGTTCCTGCTGCCTGCACCACCGCTAC
CAGCGCGCAACACACGGGCCGGCGGCGGGCACGAGGACGGGGGCAATGTT
ACGAGCCTGTGTATGTGGAGGAGGTGGCAGCTCACATGTATTTGGCCTTA
GAGgtgaggctactgggaaaggagagaggtggcagttcgagatcaacagc
tcagcatgtctgtgcgtagaagcacccctgaccctatagctttcttcttc
gtgatgcagtgaaaggatccaataggagagcgaaatgctatgataaattc
ttgcctctctcatgactcatccactgtgttcccttaccacccctctccgc
ttcagATCCGCAACCGCAAGAAACCGAAAACCAAGACCATCCTCCCTTCC
TGCTTCATTGGCGGCGAGGCTGTGTCGTGGATACACAACAAGGGGTATGC
TTCGTCAAGAGGGGAAGCAACGCGACTGGGCGATGAGATGATTGCTTTGG
GTTTCGTCCGTGCGGTAGACGAATCGGCGTCATTTGAGAGAAAAAGAGGA
GGGAGAAAGAGAGGAGACAAGGAGGAGGCAGTTAAGCACATGGTTGATGC
ATACCTGCTTTATGAATTTACATGTGACGTGGAGGATGCTGCCTGGCGAG
AGGGAGGGCTGCCGCTATCCTCATCCCCATCCTCCTTCTCTTTTCCCTCT
CTGTCATCGTTCACCGCACGACTTCAAGCGGGGGGGGAGAGAGGGAGGGT
ACGGGGGAGGAAACGCTGGGCCTTTCCTGCACACACTGCACACAATTCCC
TCGTGTTGGACATGGCATTGGCCAGAGAGATCGAAGAGGCCTTTGCCTTC
GACCCTCCTCCTCCCCCTCCTCCTCCTTCCATACATCCTATAATTGCTCG
TCCTCCTCCTTCTCCTGCAGCTGCAGGCGATTCCCCGCCTTTCCCTTCCT
CCCTCTCTTCACCCTCTCAAGGCGTCAATACCAATCCCACGGCTATTGCC
CAAGCCATCGCCTTACTCAAACTCCGTGAGCGCGTCCGACAAGTCGGCAA
GCGTAACGCCCCCGGGTGGCACCTCCAAGAATCAAAAACCACCACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAGCGACACGAAAAGTGCTTAAAAAG
TTTAGCGACAGAGGTTCGTCGTCGTCGTTGTCGCCGTCGTCCCCGTCCTC
CTTCCCTTCCTCGCCCTCTTCCACGTCTCATCTCACCAAGCACTACACCC
GTTCGAAACCGTTAGGCTCCTTCTCCCCCATCACCAAAACCGTTGGTGTC
ATCCCGTGTTCTCCGTCAACTTTCCTTCACGAACTGTACGAGGTTTATCC
CACCAAGGAGGAGGGAAGGAGCGGGAGGGAGGGAGGGAGGAAGGGGGGGG
CCGAAGCGGGCTTTGAGGACGGGATGGTGGTGGAGGAGCTACCAGATCTG
GTGAAGTGCAGGAACGTCCTACTGGGGAGAGGAGGGAGAGGAAGGGAGGA
AGGAGGAGGGGATGCATCCGAAGCTGCAGGAGGAGCAGATGGAGCGGAGG
CAAAATCAGGAGTTGGAGGAGGAGAAGGAAGAGGAGGAGGCGGAGGAGGC
GGAGGAGGAGGAGCAGCCACTGCCGCCGCCACCGCCTGTAATTATAAAGT
GGCGCGCTGCCAGGCCTGCGGTGCCGAGGTTGCAAGGTTGCTGGAGGCCA
TAGACGCACATGAGCCGCGCTGCCGCGGAATCCGAGGAGGGGGGAAGGGT
GAGGGGGTGAAGAGCATGTCACAGTCTCCTGTGAACACCACCCGCATCAT
TTACCGCACGGCCCACTCGTTGTCGTCCCCCTCCCCTTCCCCCCTCCTTC
CATCCATCCCTCGTCCTCGCCCTCTACCCCGTGTGTGGGAAGCGTGCCTG
TTGCAAGATTCGTTCTTTGACTCGAGCGAGGAGGCTCTGTATGTGTACGA
AATCAGCGTGAGGCATACGCGGGTAGAGGGCGGTCCTCCAGCCACCCACA
CGCCGGCTGAGGTCCTCCTTTTGCTCTACGTCCTACGTCCCTTACGGAGG
GAGAGAGGGAGGGCGGAAATGGGGAAGGGTTCTCTCGCGCAGGTTTCTTC
CCATGGAGGGAGGAAGGGAGGATGGGAGGAGAAGGAAGAGGAGGAATGTG
TGTTGACGGTGATTTGTCAGATGAATGGTGGGAAGGAGGAGGGCTCGAAG
TGGTGGCGGGGAGGGAGGGAGGGAGGGAAGGGGGGTGGGTGGGTTGGGTT
GGTGATGTCGCACGAGGCGGCGTGGAGGGCATGGGGGGCGGAGAGACAGG
AGAGGAGGAGAAGGAGGAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAG
AGGGAGAGGGGAGCCAGGACCGGAAGGAGAGGGGTATTGATGGCACGAGG
GATGGTGATGGCGAGCAACAAGAGCAACAGCAGTATGGGCAGACGTGCAA
AACATGCTGCTGCTACTGCAGCAGCAGCAGCAGCAGAAAAAGAAGAGAAG
CAGCAACTTTCCCCTTCAGCTGAAACGGCGCCGTGCTCCCTCTCGTCCTC
GTCCTCCTCCTTTGCCTCCTTCCTCTTTGGTGGCCCTGGAGGAAGCTCTC
TGTCTCTAGGGAGGGAGGAAGGGAAGGAGGAAGAGGAGGAGCAAGACCTG
CCGGCACCATCCCAAATGCCGGAGGAGGAACAAGAAGCAGTCGCTTCTCC
GGCCCCTGCCCCTGTTCCCTCCCCCCCCCCCCCCCCTCCGACTTCGAAAG
TGAGCCTGAAGGACCTGGACGTGATTTCCCTCATCGGCCGAGGCGGCTTC
GGTAGAGTCTACTTAGTGCGTCGCCGTCGCCCTGGCCCTGCGCCCGGGCA
GCAGCAGCTGCAGCAGCTGCACCAGACTCCGTCCTCCTCTTTCTCCTCCT
CCTCTTTATTTCCTTCCGCATACCTCCCTCCCCCCCCCCACCTTCCCCCC
ACTCACAACAACCCCCTGTCTACGCCCTTAAAGTCCTCCTCAAATCCGAC
CTCTCCAAGCGCAACCAAATCGAGCGCACCTTGA
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protein sequence of NO13G01500.1

>NO13G01500.1-protein ID=NO13G01500.1-protein|Name=NO13G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=944bp
MASSASRIVPAACTTATSAQHTGRRRARGRGQCYEPVYVEEVAAHMYLAL
EIRNRKKPKTKTILPSCFIGGEAVSWIHNKGYASSRGEATRLGDEMIALG
FVRAVDESASFERKRGGRKRGDKEEAVKHMVDAYLLYEFTCDVEDAAWRE
GGLPLSSSPSSFSFPSLSSFTARLQAGGERGRVRGRKRWAFPAHTAHNSL
VLDMALAREIEEAFAFDPPPPPPPPSIHPIIARPPPSPAAAGDSPPFPSS
LSSPSQGVNTNPTAIAQAIALLKLRERVRQVGKRNAPGWHLQESKTTTAA
AAAAAAATATRKVLKKFSDRGSSSSLSPSSPSSFPSSPSSTSHLTKHYTR
SKPLGSFSPITKTVGVIPCSPSTFLHELYEVYPTKEEGRSGREGGRKGGA
EAGFEDGMVVEELPDLVKCRNVLLGRGGRGREEGGGDASEAAGGADGAEA
KSGVGGGEGRGGGGGGGGGGAATAAATACNYKVARCQACGAEVARLLEAI
DAHEPRCRGIRGGGKGEGVKSMSQSPVNTTRIIYRTAHSLSSPSPSPLLP
SIPRPRPLPRVWEACLLQDSFFDSSEEALYVYEISVRHTRVEGGPPATHT
PAEVLLLLYVLRPLRRERGRAEMGKGSLAQVSSHGGRKGGWEEKEEEECV
LTVICQMNGGKEEGSKWWRGGREGGKGGGWVGLVMSHEAAWRAWGAERQE
RRRRRREEEEEEEEEKRERGARTGRRGVLMARGMVMASNKSNSSMGRRAK
HAAATAAAAAAEKEEKQQLSPSAETAPCSLSSSSSSFASFLFGGPGGSSL
SLGREEGKEEEEEQDLPAPSQMPEEEQEAVASPAPAPVPSPPPPPPTSKV
SLKDLDVISLIGRGGFGRVYLVRRRRPGPAPGQQQLQQLHQTPSSSFSSS
SLFPSAYLPPPPHLPPTHNNPLSTPLKSSSNPTSPSATKSSAP*
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Synonyms
Publications