NO13G01440, NO13G01440 (gene) Nannochloropsis oceanica

Overview
NameNO13G01440
Unique NameNO13G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1054
Alignment locationchr13:432340..433393 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:432340..433393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0070682proteasome regulatory particle assembly
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR038966TMA17
Homology
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BLAST of NO13G01440 vs. NCBI_GenBank
Match: XP_005853660.1 (hypothetical protein NGA_0273502 [Nannochloropsis gaditana CCMP526] >EKU22701.1 hypothetical protein NGA_0273502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.1 bits (362), Expect = 3.600e-31
Identity = 76/110 (69.09%), Postives = 91/110 (82.73%), Query Frame = 0 
Query:    1 MAGCRAYTELEAEKLTCEIVELENSVMHLKRSNQELTDALASSPEDTDFQEAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIENEAAASGRQA 111
            MAGCRA+ E+EAEKLTCEIVELENS+ HL RSN+EL  ALAS P+D DF+EA+ EN  VIQRK+ LLEELKKEL  H+S++VTALGAAEARQLPAAIA+E +  ++   A
Sbjct:    1 MAGCRAHNEVEAEKLTCEIVELENSIAHLTRSNEELAMALASDPDDKDFREAVTENVSVIQRKKKLLEELKKELKAHRSLMVTALGAAEARQLPAAIALETQRPSTSTGA 110
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BLAST of NO13G01440 vs. NCBI_GenBank
Match: EWM20047.1 (hypothetical protein Naga_102079g2 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 4.000e-14
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   39 ALASSPEDTDFQEAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIENEAAASGRQA 111
            ALAS P+D DF+EA+ EN  VIQRK+ LLEELKKEL  H+S++VTALGAAEARQLPAAIA+E +  ++  +A
Sbjct:    2 ALASDPDDKDFREAVTENVSVIQRKKKLLEELKKELKAHRSLMVTALGAAEARQLPAAIALETQRPSNFTEA 73
The following BLAST results are available for this feature:
BLAST of NO13G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853660.13.600e-3169.09hypothetical protein NGA_0273502 [Nannochloropsis ... [more]
EWM20047.14.000e-1465.28hypothetical protein Naga_102079g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001750NSK001750Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01440.1NO13G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596595gene_6865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01440.1NO13G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01440 ID=NO13G01440|Name=NO13G01440|organism=Nannochloropsis oceanica|type=gene|length=1054bp
ACAGGCCAGGCCTTGTTAAGCGCGCGGTTTTCGCCTTTCGAAGCAAGCAC
CCATACACGTACGACAATATATTCACACAGCCAAAACCTCCTCACTCTCA
TAAGGCGTCTATCCCCTCTACGCCCCTTCAGCACCCGTCCAAAACAATGG
CCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTGTGAA
ATTGTGGAGCTCGAGAACTCAGTCATGCATTTGgtaagtttgcgatggtg
tcctggggtactacgagtgagggcggtttggggggaaggagaaattgttc
tttcctaactatttgccttgcgtggcaatctatccaagacatggacgctc
tctaaatcgatcacggaagttactcgcggcaaaatgttgatatccgcgga
ctgccgtgcatgtctgtatcgtctgtctcatgtctcctcttgtgcggcgg
ccagcatgtcgtttgcgccaccctcgaagggcggtttcgtaccttacctc
acgctgcgacactgcctatatttgcccccacttctaccgtttgtatatac
ccattatcgctacctatatgtacactccctctccgtacgagtcaatgttc
atcttcttccccactacaaaaacaaacagAAACGCTCCAATCAAGAACTC
ACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAAGAGGCCAT
CAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCTCGAAGAGC
TGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGGCCTTGGGC
GCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAAAACGAGGC
GGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGCAGCACGTG
CAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACCAGCAGCAG
CCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGAGGACCATGTTA
AAAAACGAAAAGCGAATACAAAGAAACCAAGTGAGAAGATGTCAAACAGT
ATAT
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protein sequence of NO13G01440.1

>NO13G01440.1-protein ID=NO13G01440.1-protein|Name=NO13G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MAGCRAYTELEAEKLTCEIVELENSVMHLKRSNQELTDALASSPEDTDFQ
EAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIE
NEAAASGRQAASIATEAARAAQARAAPNQATPDQQQPEEEGKEGGVYL*
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Synonyms
Publications