NO13G01400, NO13G01400 (gene) Nannochloropsis oceanica

Overview
NameNO13G01400
Unique NameNO13G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr13:426562..427713 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:426562..427713 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO13G01400 vs. NCBI_GenBank
Match: XP_005853657.1 (hypothetical protein NGA_0272302 [Nannochloropsis gaditana CCMP526] >EKU22698.1 hypothetical protein NGA_0272302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.3 bits (534), Expect = 7.100e-51
Identity = 95/149 (63.76%), Postives = 121/149 (81.21%), Query Frame = 0 
Query:   65 PSYCLLVISSIGVMGCGAAAGMYRAKHSTEGTEDWRKLPPSQQVKHWKVDPNSHFNPTRFAAKALAVGTVLCLSATGVAAFALGRVLNISSIDEFVSKMRVWAPAKKRELEAWLHIKPNPVVEVERRHVEKMTYDEEIEYWGDILMKEE 214
            PSY LL++SS+G++GCG AAG+YRA   TEG E+WRKLPPSQQVKHWK DP++ FNPTRFA KALAVGTVLCLSATG  AF +GR + + +++EF  K++VWAPAK+RELEAWL IKPN  +E ER  +  M+Y+EEI+YW  +++ EE
Sbjct:   47 PSYGLLLMSSLGIVGCGVAAGLYRANRDTEGMEEWRKLPPSQQVKHWKRDPHAEFNPTRFAGKALAVGTVLCLSATGTLAFVVGRAMGVGTVEEFTQKLKVWAPAKRRELEAWLKIKPNASLERERERLAAMSYEEEIDYWERVVVAEE 195
The following BLAST results are available for this feature:
BLAST of NO13G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853657.17.100e-5163.76hypothetical protein NGA_0272302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001754NSK001754Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01400.1NO13G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672312gene_6869Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01400.1NO13G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01400 ID=NO13G01400|Name=NO13G01400|organism=Nannochloropsis oceanica|type=gene|length=1152bp
AGGACTATGGGTACGACCACCAGTAGCCCCAGTACCGCTTCCAGCAAGTA
TGGAGCAACACTGTTTACTGAGCCTTTGGAATTTACTCCAACAACTCATG
CCTTAGCAACGAACTCCCCTCCCTCCTCCTCGTCCTCCTCCTCCTCCTCC
TCACCACCACCACAAGAGCCATCACCACCACTCCGCAACTCGTCCATGCC
TTCCTACTGCCTCTTAGTCATATCCTCGATAGGTGTCATGGGCTGTGGTG
CGGCTGCGGGCATGTACCGGGCCAAACACAGCACCGAGGGGACTGAAGAC
TGGCGGAAGCTGCCTCCAAGTCAGCAGGTCAAACACTGGAAAGTgtacgt
attttgccaaggaagatgtgagagtagggttagagaaaagaaaggagaaa
agggttgaaaagaaacgagacgaattttccattctcgtagcctgtccttg
aatttacatatcacccattcagcctcccttcccatacacagAGACCCAAA
CAGCCACTTTAATCCCACCCGCTTCGCGGCCAAGGCCCTTGCGGTGGGTA
CTGTTTTGTGCCTGAGCGCTACGGGTGTTGCTGCTTTCGCGTTGGGACGT
GTATTGAACATTAGCTCCATCGATGAGTTCGTCAGTAAAATGCGCGTGTG
GGCGCCCGCGAAAAAAAGGGAGTTGGAGGCATGGTTACATATCAAACCAA
ACCCAGTGGTGGAGGTGGAGAGGAGGCATGTGGAGAAAATGACGTATGAC
GAGGAGATAGAGTATTGGGGGGATATCTTGATGAAGGAGGAGAGGGAGAA
GAAGGTGAGAGAGATAGCAGAAGCAGGAGCAGTGGGTGTTGCAGGAGGGG
TTCGCTCTATCAAAGAAGGGAGGAAGCAGCAGCAACAGCAGCAGCAGTGG
TGGAGATGGCCTTGGCGGACGAAAGGATGATTTGAAAAAAAGGGGCGACG
GATTAGTAGGTTTGTTTATAGATATGTGTGAATACAGGAAAAGGAGACGA
AAAGGCTTAGGGGAGAGTTCTCAATGGACGTAGTCCTATGTAGGCAAAAC
AATGACAAATGAAATTAAAGTTATGAGAGAATCAAAGGACAGATAGAAAG
ATAGAAAGAGAGATCATAGGATGCATTAATGTTTCCAATGCCTTGAAACG
AG
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protein sequence of NO13G01400.1

>NO13G01400.1-protein ID=NO13G01400.1-protein|Name=NO13G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MGTTTSSPSTASSKYGATLFTEPLEFTPTTHALATNSPPSSSSSSSSSSP
PPQEPSPPLRNSSMPSYCLLVISSIGVMGCGAAAGMYRAKHSTEGTEDWR
KLPPSQQVKHWKVDPNSHFNPTRFAAKALAVGTVLCLSATGVAAFALGRV
LNISSIDEFVSKMRVWAPAKKRELEAWLHIKPNPVVEVERRHVEKMTYDE
EIEYWGDILMKEEREKKVREIAEAGAVGVAGGVRSIKEGRKQQQQQQQWW
RWPWRTKG*
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Synonyms
Publications