NO13G01320, NO13G01320 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETI43544.1 (hypothetical protein, variant 5 [Phytophthora parasitica P1569] >ETK83578.1 hypothetical protein, variant 5 [Phytophthora parasitica] >ETL90162.1 hypothetical protein, variant 5 [Phytophthora parasitica] >ETM43457.1 hypothetical protein, variant 5 [Phytophthora parasitica] >ETO72171.1 hypothetical protein, variant 5 [Phytophthora parasitica P1976] >ETP13319.1 hypothetical protein, variant 5 [Phytophthora parasitica CJ01A1] >ETP41388.1 hypothetical protein, variant 5 [Phytophthora parasitica P10297]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 418 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 529
BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETL36986.1 (hypothetical protein L916_11138 [Phytophthora parasitica]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 597 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 708
BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETL36988.1 (hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 576 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 687
BLAST of NO13G01320 vs. NCBI_GenBank
Match: ETL36991.1 (hypothetical protein, variant 5 [Phytophthora parasitica]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 418 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 529
BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_008907631.1 (hypothetical protein PPTG_13600 [Phytophthora parasitica INRA-310] >ETN07255.1 hypothetical protein PPTG_13600 [Phytophthora parasitica INRA-310]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 597 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 708
BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_008907633.1 (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETN07257.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 576 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 687
BLAST of NO13G01320 vs. NCBI_GenBank
Match: XP_008907636.1 (hypothetical protein, variant 5 [Phytophthora parasitica INRA-310] >ETN07260.1 hypothetical protein, variant 5 [Phytophthora parasitica INRA-310]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 418 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 529
BLAST of NO13G01320 vs. NCBI_GenBank
Match: KUF64611.1 (Ubiquitin carboxyl-terminal hydrolase 12 [Phytophthora nicotianae]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVE-THRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 L+ V L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C +C DYDLC +C E +HRY W + ++ H H M + P+ Sbjct: 597 LEQVEKLAEKLDIPKFRVRSA-FRRCHEDALATLRYIMEGRHLGFICDSCGETDFTGARFNCAVCNDYDLCASCNVQSCEISHRYANVDGKWQRVYNFKDHNTKHTMRKMLPV 708
BLAST of NO13G01320 vs. NCBI_GenBank
Match: OWZ24198.1 (Ubiquitin carboxyl-terminal hydrolase and/or F-box protein [Phytophthora megakarya]) HSP 1 Score: 88.6 bits (218), Expect = 1.300e-13 Identity = 56/133 (42.11%), Postives = 71/133 (53.38%), Query Frame = 0 Query: 928 ADASLCVRPRGSRLRPRLLLDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACR--QLPVETHRYRFQGRAWAK-EEYQGHREGHAMVCLQPI 1057 A+A L P G + P L+ V +L EKL +FRVR+ F H +A TL Y + GRHLGF CD CG DF G RF C IC DYDLC AC Q +HRY W + ++ H+ H M + P+ Sbjct: 568 AEARLLFNPDG-LVTP--TLEQVENLAEKLDIPKFRVRSA-FRKCHEDALATLRYIMAGRHLGFICDSCGETDFTGARFNCAICSDYDLCAACNAAQSCEISHRYANVDGKWQRVYNFKDHKPLHTMRKMLPV 696
BLAST of NO13G01320 vs. NCBI_GenBank
Match: OQR91179.1 (ubiquitin carboxyl-terminal hydrolase and/or F-box protein [Thraustotheca clavata]) HSP 1 Score: 87.4 bits (215), Expect = 2.900e-13 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0 Query: 947 LDTVADLFEKLGTQRFRVRNTFFEHAHTNARETLEYSL-GRHLGFCCDRCGCLDFKGPRFKCCICQDYDLCQACRQLPVET-HRYRFQGRAWAK-EEYQGHREGHAM 1051 L + L E L RFR+ + + + +TL++ + GRHLGF CD CG DF+GPR+ CC C+D+DLC +C +L + HRY W + E+ GH + H+M Sbjct: 516 LHDIETLAETLDIPRFRIHSA-YRKCKGDPSQTLKFFMEGRHLGFICDSCGDTDFRGPRYNCCTCRDFDLCSSCYELSKDVDHRYASVNGTWKRVTEFDGHSKNHSM 621 The following BLAST results are available for this feature:
BLAST of NO13G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01320 ID=NO13G01320|Name=NO13G01320|organism=Nannochloropsis oceanica|type=gene|length=3369bpback to top protein sequence of NO13G01320.1 >NO13G01320.1-protein ID=NO13G01320.1-protein|Name=NO13G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1090bpback to top Synonyms
Publications
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