NO13G01260, NO13G01260 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G01260 vs. NCBI_GenBank
Match: EWM21796.1 (thymidylate kinase [Nannochloropsis gaditana]) HSP 1 Score: 358.2 bits (918), Expect = 2.800e-95 Identity = 201/326 (61.66%), Postives = 226/326 (69.33%), Query Frame = 0 Query: 19 KPTVARLLSWTWRNAAVFSTLCGSWRPTLLVFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNCKIRPF-RPLSVVSTTRLLMTAGGSSQASTDSSGTGTISTTADIQPTKQRGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLWP 344 + T+AR+L+WTWRN AV S+LC ++RP +L + RP P + R MTAGGS + + SG + + +K RGA IVLEGVDRCGKTTQVAR+VK+L A G AAEAIRFPDRTTTIG MINAYLA ATDLDD IHLLFSANRWEA+ASL SKLAAG TLVCDRYAYSGVAFSAAK GMD +WCKQCDRGLP+PDAVIYLDIS EAAA RG+YGEERYE Q MQG+VRENFQKLMEGDSIWHVVDA +LE+VSE V KV MAT K+V E L TLWP Sbjct: 10 RQTLARILAWTWRNVAVLSSLC-AFRPPVL----------HHLLESCSTTTQLRAHSSLISFASALLDTGNRPVGHPPFITVNRRPFMTAGGSIEKAYTESGDASSLPSF----SKPRGAFIVLEGVDRCGKTTQVARVVKALHAQGRAAEAIRFPDRTTTIGQMINAYLANATDLDDRVIHLLFSANRWEAMASLRSKLAAGMTLVCDRYAYSGVAFSAAKDGMDFDWCKQCDRGLPQPDAVIYLDISAEAAAKRGRYGEERYENQGMQGRVRENFQKLMEGDSIWHVVDAGVSLEDVSERVDKVVMATAKRVEEEGLQLGTLWP 320
BLAST of NO13G01260 vs. NCBI_GenBank
Match: GBG29775.1 (Thymidylate kinase [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 231.5 bits (589), Expect = 4.000e-57 Identity = 115/208 (55.29%), Postives = 149/208 (71.63%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 RGA IV EGVDRCGKTTQ RLV +L++ + E RFPDRTT G +I++YL +LDDHA+HLLFSANRWE+ ++ KLAAGTTL+ DRYA+SGV FSAAKQGMDIEWCK D GLP PDAVI+L +++ A RGQ+GEERYE Q+ Q KV +NF + M+ DS W V+DA ++ ++E + + + + ++ LETLW Sbjct: 9 RGAFIVFEGVDRCGKTTQTQRLVAALQSRKVDVELCRFPDRTTATGKIIDSYLKNGVELDDHAVHLLFSANRWESAQAIRKKLAAGTTLIVDRYAHSGVCFSAAKQGMDIEWCKAPDAGLPAPDAVIFLKLAIADAMKRGQFGEERYEKQDFQTKVLDNFMQ-MKTDS-WRVIDAKRPIDAIAEEIETLALDIINSC--ADKPLETLW 212
BLAST of NO13G01260 vs. NCBI_GenBank
Match: GAX17176.1 (dTMP kinase [Fistulifera solaris]) HSP 1 Score: 229.9 bits (585), Expect = 1.200e-56 Identity = 114/209 (54.55%), Postives = 156/209 (74.64%), Query Frame = 0 Query: 125 TTADIQPTKQRGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDS--IWHVVDAAGTLEEVSEGVGKVGMATVKKV 332 +TA +PT RGA +LEGVDRCGKTTQ RL++ L G+AA A+RFP+RTT+ G +I++YL + +++DD AIHLLFSANRWE+ ++ +L AGT++VCDRYAYSGVAFSA+K MD+EWC+ DRGLP PD VI+LD+S E A RG YG+ERYE +EMQ +VR+ FQ+L + D W V+AA T+++V E + + T+++V Sbjct: 5 STAPAKPT--RGAFFLLEGVDRCGKTTQCQRLLQRLVQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADTIVQQLRAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQLRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEEDIWSIAQQTLEQV 211
BLAST of NO13G01260 vs. NCBI_GenBank
Match: CBJ31061.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 228.0 bits (580), Expect = 4.400e-56 Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 0 Query: 134 QRGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDS----IWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 +RGA I+ EGVDRCGKTTQ LV+SL+ G A +RFPDRTT IG MIN +L TD+DD +HLLFSANRWEA + + L AGTT+VCDRYAYSGVAFSA+K G+ + WCK DRGLP PD +++LDISVE A RGQ+GEERYE +E Q VR F LME D W ++DA + + + + K+G + V +V E G +LW Sbjct: 13 KRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGHMINGFLRNTTDIDDRCVHLLFSANRWEAESKIRELLKAGTTVVCDRYAYSGVAFSASKPGLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKASGVAWQLIDANREIGSIQDEIQKIGTSVVGEVEGKEIG--SLW 223
BLAST of NO13G01260 vs. NCBI_GenBank
Match: AFK47164.1 (unknown [Medicago truncatula]) HSP 1 Score: 228.0 bits (580), Expect = 4.400e-56 Identity = 118/223 (52.91%), Postives = 158/223 (70.85%), Query Frame = 0 Query: 121 GTISTTADIQPTKQRGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLWP 344 G +S + + + RGALIVLEG+DR GK++Q +RLV L GL+AE RFPDRTT +G MI+AYL A+ LDDH IHLLFSANRWE + + +KL +GTTL+ DRY+YSGVAFS+AK G+DI+WCK + GL PD V YLDIS + AA RG YG+ERYE E Q KV E+++ L D+ W +VDA +E+V + + ++ +A VK+ +G + L +LWP Sbjct: 44 GNLSCSIEGNKKESRGALIVLEGLDRSGKSSQCSRLVSYLEGEGLSAELWRFPDRTTNVGQMISAYLTNASQLDDHTIHLLFSANRWEKRSLMETKLKSGTTLIVDRYSYSGVAFSSAK-GLDIDWCKSPENGLLAPDLVAYLDISPDKAAERGGYGDERYEKLEFQQKVAEHYKVL--HDTSWKIVDACQPIEDVEKQLQEIALACVKQCQQG-KPLSSLWP 262
BLAST of NO13G01260 vs. NCBI_GenBank
Match: XP_005840041.1 (hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712] >EKX53061.1 hypothetical protein GUITHDRAFT_64796 [Guillardia theta CCMP2712]) HSP 1 Score: 227.6 bits (579), Expect = 5.700e-56 Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGD-SIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 RGALIVLEG+DR GK+TQV RLV+ L + G A + FPDRTTT+G +IN YL DLDD IHLLFSANRWEA S+ +L++G TL+ DRYAYSGVAFSAAK +DIEWCK DRGLP PD VIYLD+S + A RG YGEERYE +E Q KVR F+ LM + ++W VDA T++EV+E + + V +V ++ + +LW Sbjct: 4 RGALIVLEGLDRSGKSTQVIRLVEKLVSMGKKASKMNFPDRTTTVGGLINEYLQSGKDLDDAVIHLLFSANRWEATRSIRDRLSSGETLIVDRYAYSGVAFSAAKGTLDIEWCKGPDRGLPAPDCVIYLDVSSDVAKQRGGYGEERYEKEEFQKKVRTCFEALMSQEPAMWRRVDANKTMDEVTEEIEGIATKIVDQV--TDKPIGSLW 210
BLAST of NO13G01260 vs. NCBI_GenBank
Match: XP_008341332.1 (PREDICTED: thymidylate kinase isoform X1 [Malus domestica] >XP_008341333.1 PREDICTED: thymidylate kinase isoform X1 [Malus domestica]) HSP 1 Score: 226.9 bits (577), Expect = 9.800e-56 Identity = 120/208 (57.69%), Postives = 148/208 (71.15%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 RGAL+VLEG+DRCGKTTQ RLVK+L G +AE RFPDRTT++G MI++YL+ + LDDH IHLLFSANRWE + + SKL +GTTLV DRY+YSGVAFS+AK G+DIEWCK + GL PD V+YLDI E AA RG YG ERYE E Q KV +N+Q L W ++DA ++EEV E + K+ + VK EG + L LW Sbjct: 58 RGALVVLEGLDRCGKTTQSTRLVKNLERVGYSAELWRFPDRTTSVGKMISSYLSNESQLDDHTIHLLFSANRWEKRSLMESKLKSGTTLVVDRYSYSGVAFSSAK-GLDIEWCKAPEIGLLAPDLVVYLDIPPEKAAERGGYGGERYEQLEFQKKVGQNYQVLR--GPTWKIIDACSSMEEVEEQLQKMVLDCVKTCQEG-KPLSCLW 261
BLAST of NO13G01260 vs. NCBI_GenBank
Match: XP_008341334.1 (PREDICTED: thymidylate kinase isoform X2 [Malus domestica]) HSP 1 Score: 226.9 bits (577), Expect = 9.800e-56 Identity = 120/208 (57.69%), Postives = 148/208 (71.15%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 RGAL+VLEG+DRCGKTTQ RLVK+L G +AE RFPDRTT++G MI++YL+ + LDDH IHLLFSANRWE + + SKL +GTTLV DRY+YSGVAFS+AK G+DIEWCK + GL PD V+YLDI E AA RG YG ERYE E Q KV +N+Q L W ++DA ++EEV E + K+ + VK EG + L LW Sbjct: 18 RGALVVLEGLDRCGKTTQSTRLVKNLERVGYSAELWRFPDRTTSVGKMISSYLSNESQLDDHTIHLLFSANRWEKRSLMESKLKSGTTLVVDRYSYSGVAFSSAK-GLDIEWCKAPEIGLLAPDLVVYLDIPPEKAAERGGYGGERYEQLEFQKKVGQNYQVLR--GPTWKIIDACSSMEEVEEQLQKMVLDCVKTCQEG-KPLSCLW 221
BLAST of NO13G01260 vs. NCBI_GenBank
Match: GAX21444.1 (dTMP kinase [Fistulifera solaris]) HSP 1 Score: 226.9 bits (577), Expect = 9.800e-56 Identity = 109/199 (54.77%), Postives = 149/199 (74.87%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDS--IWHVVDAAGTLEEVSEGVGKVGMATVKKV 332 RGA +LEGVDRCGKTTQ RL++ L G+AA A+RFP+RTT+ G +I++YL + +++DD AIHLLFSANRWE+ + +L AGT++VCDRYAYSGVAFSA+K MD+EWC+ DRGLP PD VI+LD+S E A RG YG+ERYE +EMQ +VR+ FQ+L + D W V+AA T+++V + + + T+++V Sbjct: 11 RGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLDDGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQV 209
BLAST of NO13G01260 vs. NCBI_GenBank
Match: XP_009370289.1 (PREDICTED: thymidylate kinase-like isoform X1 [Pyrus x bretschneideri] >XP_009370290.1 PREDICTED: thymidylate kinase-like isoform X1 [Pyrus x bretschneideri]) HSP 1 Score: 226.5 bits (576), Expect = 1.300e-55 Identity = 120/208 (57.69%), Postives = 148/208 (71.15%), Query Frame = 0 Query: 135 RGALIVLEGVDRCGKTTQVARLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSANRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGLPKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIWHVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLW 343 RGAL+VLEG+DRCGKTTQ RLVK+L G +AE RFPDRTT++G MI++YL+ + LDDH IHLLFSANRWE + + SKL +GTTLV DRY+YSGVAFS+AK G+DIEWCK + GL PD V+YLDI E AA RG YG ERYE E Q KV +N+Q L W ++DA ++EEV E + K+ + VK EG + L LW Sbjct: 58 RGALVVLEGLDRCGKTTQSTRLVKNLERLGHSAELWRFPDRTTSVGKMISSYLSNESQLDDHTIHLLFSANRWEKRSLMESKLKSGTTLVVDRYSYSGVAFSSAK-GLDIEWCKAPEIGLLAPDLVVYLDIPPEKAAERGGYGGERYEQLEFQKKVGQNYQVLR--SPTWKIIDACSSMEEVEEQLQKMVLNCVKTCQEG-KPLSCLW 261 The following BLAST results are available for this feature:
BLAST of NO13G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01260 ID=NO13G01260|Name=NO13G01260|organism=Nannochloropsis oceanica|type=gene|length=1314bpback to top protein sequence of NO13G01260.1 >NO13G01260.1-protein ID=NO13G01260.1-protein|Name=NO13G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bpback to top Synonyms
Publications
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