NO13G01090, NO13G01090 (gene) Nannochloropsis oceanica

Overview
NameNO13G01090
Unique NameNO13G01090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr13:343462..344796 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:343462..344796 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO13G01090 vs. NCBI_GenBank
Match: EWM21783.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 4.700e-103
Identity = 214/405 (52.84%), Postives = 273/405 (67.41%), Query Frame = 0
Query:   19 SGLQRLLGFFTSRVIPIFVTSFNALLTVWRMALQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGS--------EAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEAAAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKGVNAQIVRMVRNLPPAATXXXXXXXXXXXXXXXXXXXXXVTLVELSQRRVSRAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTRMRAGGRKGWFGRGWM 416
            S L+R+  F   R    F+ SFN L+TVWR+AL W+N YILY +YGG+PANDF+HKAVLIGDGLAQGFG+WVS    SGPMRYLNE    N A+KM+WVFFERGA HSTT DW+P    + E+ GVG+        + E +  H + +D S   L+P   ++    SLL  VL+SRSGRD C++IVMVGLQD+LR KD  AL ALAA     + + +T + +      ++  T+   +E ++  P+C+TV +LR I+LHLL+ PH+PHVCLCTLPTVG PSS+RARAIKGVNAQI  MVR+LPP  +                     VTLV+LSQRRVSR EGRA DGVH  S+GYKS++ A+L+ELAP MVRHEW+ILQ ++SG+K R +     GW G GW+
Sbjct:   19 SMLRRVWQFLLDR----FLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMP---HESENKGVGTSEAARPEPQGEIRGDHPESEDSSL--LQPLP-AIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGG---DGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPS----------PASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKR-RPDGWLG-GWL 398          
BLAST of NO13G01090 vs. NCBI_GenBank
Match: XP_005855707.1 (hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526] >EKU20653.1 hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 222.2 bits (565), Expect = 3.100e-54
Identity = 131/258 (50.78%), Postives = 168/258 (65.12%), Query Frame = 0
Query:   19 SGLQRLLGFFTSRVIPIFVTSFNALLTVWRMALQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGS--------EAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNS----TPQEAAAEEPFCQTVLNLR 265
            S L+R+  F   R    F+ SFN L+TVWR+AL W+N YILY +YGG+PANDF+HKAVLIGDGLAQGFG+WVS    SGPMRYLNE    N A+KM+WVFFERGA HSTT DW+P    + E+ GVG+        + E +  H + +D S   L+P   ++    SLL  VL+SRSGRD C++IVMVGLQD+LR KD  AL ALAA  +       T  G  +M  S++ GTNS      +E ++  P+C+TV +LR
Sbjct:   24 SMLRRVWQFLLDR----FLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMP---HESENKGVGTSEAARPEPQGEIRGDHPESEDSSL--LQPLP-AIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGD-----GATQTG--RMLPSTALGTNSETYGMDREPSSARPWCRTVSHLR 264          
BLAST of NO13G01090 vs. NCBI_GenBank
Match: CBN79810.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.0 bits (245), Expect = 4.000e-17
Identity = 91/366 (24.86%), Postives = 140/366 (38.25%), Query Frame = 0
Query:   43 LLTVWRMAL--QW--LNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGSEAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEAAAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKGVNAQIVRMVRNLPPAATXXXXXXXXXXXXXXXXXXXXXVTLVELSQRRVSRAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTRMRAG 405
            LL   R AL   W  +N +++  ++  RP  DF HK VLIGDG A+G G WV     +G  R L + A  +  ++  W    RG   S + DWLP                                       S   SL    + S + RD  +F+V +G  D++     D +    +A  K                        T  +   E   C TV NLR I   L +      V +C + T GA  + R    K +N Q+    +    A                       V +V+++  R +R +GRAFDG+HL + GY++ ++A+ + + P MV  EW + +  ++   T    G
Sbjct:   13 LLVALRRALTVTWIRINKFLMKPDWVIRPVADFRHKVVLIGDGFAEGVGDWVVMGGTAGVTRMLEKEAGSDEKVRTCWHIINRGRAGSLSSDWLP---------------------------------------SDPKSLYHRKVQSEACRDAEIFVVALGTMDVVN----DCVGMPVSAMRK------------------------TALDTFEEGEICDTVKNLREICDALRA--EGKKVVVCNVMTSGAGINRRTGTAKRINRQLALYGKATATATA----------KGETAPKGGQPVEVVKMNNPRAAREDGRAFDGLHLNARGYRAFASAVYEVVGPMMVAVEWKVWKSKLAAGLTNGAGG 299          
The following BLAST results are available for this feature:
BLAST of NO13G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21783.14.700e-10352.84conserved unknown protein [Nannochloropsis gaditan... [more]
XP_005855707.13.100e-5450.78hypothetical protein NGA_2029600, partial [Nannoch... [more]
CBN79810.14.000e-1724.86conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001784NSK001784Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01090.1NO13G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631865gene_6899Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100188g3gene8651Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01090.1NO13G01090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01090 ID=NO13G01090|Name=NO13G01090|organism=Nannochloropsis oceanica|type=gene|length=1335bp
ATGCCTCTTCACCGTCGTGGGGTCGGCACCGATAGTTTTCTTACAATCTT
GCCCTCAGGATTGCAGAGGCTGCTTGGCTTCTTCACCTCCCGGGTCATTC
CCATATTCGTCACGTCGTTCAACGCCCTTTTGACCGTGTGGCGCATGGCT
TTACAGTGGCTGAACGGCTACATCCTATACATGGAGTATGGAGGAAGGCC
TGCAAACGATTTCTATCACAAGGCAGTTTTGATTGGGGATGGGTTGGCGC
AGGGCTTTGGGGCATGGGTCTCGTTCGCATGTGCATCGGGCCCGATGCGA
TACTTGAATGAAGGCGCCGCGCTTAATCCGGCAATTAAGATGGACTGGGT
ATTTTTTGAGAGAGGCGCACGGCATAGCACCACGGACGATTGGCTGCCAC
CTGGTGCGAAGCAAGGGGAGGATGTGGGAGTCGGAAGCGAGGCGGAGGAA
AAAGAGAGACACAAGGACCTAGACGACTGCAGCAGACAAGGACTAAGACC
ATCTTCCTTTTCATTGTCATCATCATCGTCGTTGCTGCAGACTGTTCTGA
CAAGTCGTAGTGGGCGGGACGTTTGCTTGTTTATCGTCATGGTGGGCTTG
CAGGATATTCTTCGTATCAAAGACCCTGACGCCCTCCTCGCCCTCGCCGC
CGCCGCCGAAAAAGAAGAAACCTCCCGAGAAACGAATAAAGGCATGCACC
AAATGTTTTCCAGCAGTAGCCCGGGTACCAATTCCACTCCACAAGAAGCA
GCAGCAGAAGAGCCGTTTTGTCAGACAGTCCTAAATCTCCGTTGCATTGT
CCTCCACCTCCTCTCCCTCCCCCACGCACCCCACGTATGCCTCTGCACCC
TGCCCACTGTCGGCGCCCCCTCCTCCATCCGCGCCCGTGCCATTAAAGGC
GTCAATGCCCAAATCGTCCGCATGGTCCGCAACCTGCCTCCTGCTGCAAC
ACAAACACACCAAGGGGAACAGCAGCAACAGAAGCAGCAACAGCAGCAAC
AACAAAAGCCGCGTGTGACTCTTGTCGAGTTGAGCCAACGCCGGGTCTCT
CGCGCGGAAGGACGAGCATTTGATGGCGTGCATTTAACGTCCTCGGGATA
TAAGAGCTTGTCTGCTGCGATCTTAGATGAGTTGGCGCCCGCGATGGTGA
GGCATGAGTGGTCCATCCTCCAGGAGTACGTGTCGGGAAGGAAGACGAGA
ATGAGGGCGGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCTGGATGGGGGA
AGGAGGGAAGGAAAGAAATGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCT
GGATAGGGGGAGGAGGGAAGGAAAAGACACGGTAG
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protein sequence of NO13G01090.1

>NO13G01090.1-protein ID=NO13G01090.1-protein|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MPLHRRGVGTDSFLTILPSGLQRLLGFFTSRVIPIFVTSFNALLTVWRMA
LQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMR
YLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGSEAEE
KERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGL
QDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEA
AAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKG
VNAQIVRMVRNLPPAATQTHQGEQQQQKQQQQQQQKPRVTLVELSQRRVS
RAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTR
MRAGGRKGWFGRGWMGEGGKERNGGRKGWFGRGWIGGGGKEKTR*
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Synonyms
Publications