NO13G01090, NO13G01090 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO13G01090 vs. NCBI_GenBank
Match: EWM21783.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 384.4 bits (986), Expect = 4.700e-103 Identity = 214/405 (52.84%), Postives = 273/405 (67.41%), Query Frame = 0 Query: 19 SGLQRLLGFFTSRVIPIFVTSFNALLTVWRMALQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGS--------EAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEAAAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKGVNAQIVRMVRNLPPAATXXXXXXXXXXXXXXXXXXXXXVTLVELSQRRVSRAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTRMRAGGRKGWFGRGWM 416 S L+R+ F R F+ SFN L+TVWR+AL W+N YILY +YGG+PANDF+HKAVLIGDGLAQGFG+WVS SGPMRYLNE N A+KM+WVFFERGA HSTT DW+P + E+ GVG+ + E + H + +D S L+P ++ SLL VL+SRSGRD C++IVMVGLQD+LR KD AL ALAA + + +T + + ++ T+ +E ++ P+C+TV +LR I+LHLL+ PH+PHVCLCTLPTVG PSS+RARAIKGVNAQI MVR+LPP + VTLV+LSQRRVSR EGRA DGVH S+GYKS++ A+L+ELAP MVRHEW+ILQ ++SG+K R + GW G GW+ Sbjct: 19 SMLRRVWQFLLDR----FLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMP---HESENKGVGTSEAARPEPQGEIRGDHPESEDSSL--LQPLP-AIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGG---DGATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPS----------PASHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKR-RPDGWLG-GWL 398
BLAST of NO13G01090 vs. NCBI_GenBank
Match: XP_005855707.1 (hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526] >EKU20653.1 hypothetical protein NGA_2029600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 222.2 bits (565), Expect = 3.100e-54 Identity = 131/258 (50.78%), Postives = 168/258 (65.12%), Query Frame = 0 Query: 19 SGLQRLLGFFTSRVIPIFVTSFNALLTVWRMALQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGS--------EAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNS----TPQEAAAEEPFCQTVLNLR 265 S L+R+ F R F+ SFN L+TVWR+AL W+N YILY +YGG+PANDF+HKAVLIGDGLAQGFG+WVS SGPMRYLNE N A+KM+WVFFERGA HSTT DW+P + E+ GVG+ + E + H + +D S L+P ++ SLL VL+SRSGRD C++IVMVGLQD+LR KD AL ALAA + T G +M S++ GTNS +E ++ P+C+TV +LR Sbjct: 24 SMLRRVWQFLLDR----FLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMP---HESENKGVGTSEAARPEPQGEIRGDHPESEDSSL--LQPLP-AIKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGD-----GATQTG--RMLPSTALGTNSETYGMDREPSSARPWCRTVSHLR 264
BLAST of NO13G01090 vs. NCBI_GenBank
Match: CBN79810.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.0 bits (245), Expect = 4.000e-17 Identity = 91/366 (24.86%), Postives = 140/366 (38.25%), Query Frame = 0 Query: 43 LLTVWRMAL--QW--LNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGSEAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEAAAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKGVNAQIVRMVRNLPPAATXXXXXXXXXXXXXXXXXXXXXVTLVELSQRRVSRAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTRMRAG 405 LL R AL W +N +++ ++ RP DF HK VLIGDG A+G G WV +G R L + A + ++ W RG S + DWLP S SL + S + RD +F+V +G D++ D + +A K T + E C TV NLR I L + V +C + T GA + R K +N Q+ + A V +V+++ R +R +GRAFDG+HL + GY++ ++A+ + + P MV EW + + ++ T G Sbjct: 13 LLVALRRALTVTWIRINKFLMKPDWVIRPVADFRHKVVLIGDGFAEGVGDWVVMGGTAGVTRMLEKEAGSDEKVRTCWHIINRGRAGSLSSDWLP---------------------------------------SDPKSLYHRKVQSEACRDAEIFVVALGTMDVVN----DCVGMPVSAMRK------------------------TALDTFEEGEICDTVKNLREICDALRA--EGKKVVVCNVMTSGAGINRRTGTAKRINRQLALYGKATATATA----------KGETAPKGGQPVEVVKMNNPRAAREDGRAFDGLHLNARGYRAFASAVYEVVGPMMVAVEWKVWKSKLAAGLTNGAGG 299 The following BLAST results are available for this feature:
BLAST of NO13G01090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G01090 ID=NO13G01090|Name=NO13G01090|organism=Nannochloropsis oceanica|type=gene|length=1335bpback to top protein sequence of NO13G01090.1 >NO13G01090.1-protein ID=NO13G01090.1-protein|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bpback to top Synonyms
Publications
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