NO13G01070, NO13G01070 (gene) Nannochloropsis oceanica

Overview
NameNO13G01070
Unique NameNO13G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length923
Alignment locationchr13:340708..341630 -

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Properties
Property NameValue
DescriptionUPF0301 protein SAV_5129
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:340708..341630 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
Homology
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_007514677.1 (predicted protein [Bathycoccus prasinos] >CCO14917.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 80.5 bits (197), Expect = 8.500e-12
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 0
Query:   85 CLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWK 240
            C+ L     + GS GV+L RPT + ++++     +  FS + ++ GG+ G      LH    +  A  V  G+F GG   A  ++KE +        DP  FK++  Y  W PGQLE++ A G W  +   ++         L+  IAL + LW+
Sbjct:  194 CVILLLEHSKDGSMGVILNRPTMYKMADVVND-ENGPFSENALYFGGDVGDGTVSFLHGSPDVADAEEVSPGVFIGGFNDAGRLVKEGKK-------DPREFKFFARYCGWAPGQLEDECARGVWYPVACSRQ-------IALKPVIALPKPLWR 333          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: CUS37391.1 (conserved exported hypothetical protein [Candidatus Nitrospira nitrosa])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   60 IPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQ-IPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNR-FKWWFNYMSWGPGQLEEQIANGSWDVMEGG 216
            +P+P+ +G LLVA P   +   +++ LF+ ++  + G+ G+VL RPT   L+E+         +NH +F GG  G    VLL    Q +P AR +  G++ G     E ++          GL PN  F+ +  +  W PGQLE ++  GSW V+  G
Sbjct:   29 VPSPVQKGSLLVASPSLSDPNFTRTVLFIVEHG-QGGTIGLVLNRPTDVLLAEVLQDLPVLKQTNHRLFAGGPVGRTQLVLLFRLKQLLPDARHIANGIYVGTPMVLERVIA---------GLKPNEAFRAFAGFAGWAPGQLESEMREGSWGVLSSG 176          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_001421041.1 (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >ABO99334.1 predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 0
Query:   66 QGCLLVAKPWEY----NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTL 242
            +GCLLVA   E+     +F     L L  +  E GS GV+L RPT + +  ++   ++  F+ + ++ GG+ G      LH    + G+  V  G++ GG   A  ++  Q+DG+  H    + FK++  Y  W PGQLE +   G W  +   KE         L+Q I L + LW+ +
Sbjct:   85 KGCLLVAADHEFRMSQQYFHQAVILVLEHH--ENGSMGVILNRPTQYDMGYVSGE-ANGPFAKNALYFGGDVGDGTVSFLHGREDVKGSVEVLPGVYLGGYDSACELV--QQDGSTCHA---DEFKFFARYCGWAPGQLESECERGVWFPVAAAKE-------LSLKQVIQLPKPLWREI 249          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: WP_090749866.1 (YqgE/AlgH family protein [Candidatus Nitrospira nitrosa])

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   60 IPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQ-IPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNR-FKWWFNYMSWGPGQLEEQIANGSWDVMEGG 216
            +P+P+ +G LLVA P   +   +++ LF+ ++  + G+ G+VL RPT   L+E+         +NH +F GG  G    VLL    Q +P AR +  G++ G     E ++          GL PN  F+ +  +  W PGQLE ++  GSW V+  G
Sbjct:   33 VPSPVQKGSLLVASPSLSDPNFTRTVLFIVEHG-QGGTIGLVLNRPTDVLLAEVLQDLPVLKQTNHRLFAGGPVGRTQLVLLFRLKQLLPDARHIANGIYVGTPMVLERVIA---------GLKPNEAFRAFAGFAGWAPGQLESEMREGSWGVLSSG 180          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: OYT19199.1 (hypothetical protein CCU26_12955 [Nitrospira sp. UW-LDO-01])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 51/155 (32.90%), Postives = 80/155 (51.61%), Query Frame = 0
Query:   60 IPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQ-IPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNR-FKWWFNYMSWGPGQLEEQIANGSWDVM 213
            +P+P+ +G LLVA P   +   +++ LF+ ++  + G+ G+VL RPT   LSE+         +NH +F GG  G    VLL    Q +P AR +  G++ G     E ++          GL PN  F+ +  +  W PGQLE ++  GSW V+
Sbjct:   31 VPSPVQKGSLLVASPSLSDPNFTRTVLFIVEHG-QGGTIGLVLNRPTDVLLSEVLQDLPVLKQTNHRLFAGGPVGRTQLVLLFRLKQLLPDARHIANGIYVGTPMVLERVIA---------GLKPNEAFRAFAGFAGWAPGQLESEMREGSWGVL 175          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: GAX79744.1 (hypothetical protein CEUSTIGMA_g7185.t1 [Chlamydomonas eustigma])

HSP 1 Score: 79.3 bits (194), Expect = 1.900e-11
Identity = 47/156 (30.13%), Postives = 80/156 (51.28%), Query Frame = 0
Query:   66 QGCLLVAKPWEY---NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELA-PPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKE 218
            +G LL+A P  +     +  ++ + L  +D ETGS GV+L RP+ + L +L         F +  +++GG+ G +   +LH   ++ G + V  G++ GG++GA + +   E  TAD       F+W+  Y  WGPGQL+ +   G W    G  +
Sbjct:  148 RGALLLAHPLMFEQSQQYFHQAVILLLDHD-ETGSIGVILNRPSDYNLGKLVLSEPQMGQFDSCRLYVGGDVGDNRMQMLHSIQELQGCKEVVKGVYMGGIEGARSKVVAGE-ATADD------FRWYAGYAGWGPGQLQSECKRGVWFTAAGSPD 295          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: PTL96877.1 (hypothetical protein DA396_07820 [Bacteroidetes bacterium] >PTL98902.1 hypothetical protein DA440_08160 [Bacteroidetes bacterium] >PTM16873.1 hypothetical protein DA445_04580 [Bacteroidetes bacterium] >PTM18449.1 hypothetical protein DA444_04305 [Bacteroidetes bacterium])

HSP 1 Score: 78.6 bits (192), Expect = 3.200e-11
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 0
Query:   66 QGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVM 213
            +G LL+++P   + F  +S ++L  +D + GS G  L + +A     +A  F + +     +F GG   GD    LH    + GA   G GLF G   G   +L++      +  LD  +FK++  Y  W  GQLEE+I++G+W V+
Sbjct:    9 EGTLLISRPLIGDGFFEQSVVYLTTHD-QDGSMGFTLNKQSAL----IAQDFMNQLPGEDPIFYGGPVEGDALFYLHTLDTLNGAMPAGNGLFLG---GDYTVLQDAIKTARELNLDSAKFKFFLGYSGWAAGQLEEEISHGTWIVL 147          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: CBJ27043.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 1.200e-10
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = 0
Query:   66 QGCLLVAKPWEYN---HFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYG--QIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSW 210
            +GCL+VAK  +++    + +++ +FL  YD E GS G +L RPT+  L +L    +   F    ++LGG+ G     +LHP+G  ++  +  +  G++ GG       + E +   A      + FK+  +   W PGQLE++I  G W
Sbjct:  204 KGCLIVAKSTQFSMAQTYFNEAVIFLASYD-EAGSAGFILNRPTSVQLGDLVEGNALRQFQKTPLYLGGDVGEGNVQILHPFGPEKLTDSMEIIPGVYIGG------AVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIQRGVW 345          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_005848010.1 (hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis] >EFN55908.1 hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis])

HSP 1 Score: 76.6 bits (187), Expect = 1.200e-10
Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 0
Query:   66 QGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELA-PPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSW 210
            +GCLLVA+P       + + + L ++D   GS G+V+  PT   +S L      +  F    +F+GG    ++  +LH    + GA  +  G+F GG++ A  +++  E         P  F     Y  WGPGQL++++ +G+W
Sbjct:  139 RGCLLVARPRPGLGMFANTVILLLEHDDREGSSGLVINMPTPLLISNLGLEEDIADAFRQCPLFIGGPVTKNLLHVLHARRDVEGALEIIEGVFAGGVESASELVRRGE-------ASPKDFMLLSGYSGWGPGQLQQELRSGTW 276          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_002185368.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43037.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 0
Query:   24 HRHRQQRRPPFITLSASTSDKPLVAEGIDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGS----RGVVLERPTAFTLSELA---PPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVG-GGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIAN 207
            H   +  + P + +SA  +D    +    ++    G    +  G +L+A   EY+H+  ++ +F++    +       RGV+L++PT FTL E+    P    +   ++ +F GG++GGD  VLLH + +I G  S+G  G+F GG   A A  ++    T+D       FK +FNY  +   ++E+ +A+
Sbjct:   36 HHRCRNGKTPILGMSAGKNDGD-ASPSSKVRFLGKGERAIVRPGVVLLAPTNEYHHYYRQAAIFVHAMGEDDDDVYVIRGVILDQPTPFTLGEMMEHNPALQKTPLKDNLLFRGGDKGGDQVVLLHNHEEI-GQSSIGVSGVFQGGFDQAMAACEKGHRQTSD-------FKLFFNYCEFTELEMEDLLAS 217          
The following BLAST results are available for this feature:
BLAST of NO13G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_007514677.18.500e-1229.68predicted protein [Bathycoccus prasinos] >CCO14917... [more]
CUS37391.11.100e-1132.28conserved exported hypothetical protein [Candidatu... [more]
XP_001421041.11.100e-1130.00predicted protein, partial [Ostreococcus lucimarin... [more]
WP_090749866.11.100e-1132.28YqgE/AlgH family protein [Candidatus Nitrospira ni... [more]
OYT19199.11.500e-1132.90hypothetical protein CCU26_12955 [Nitrospira sp. U... [more]
GAX79744.11.900e-1130.13hypothetical protein CEUSTIGMA_g7185.t1 [Chlamydom... [more]
PTL96877.13.200e-1131.29hypothetical protein DA396_07820 [Bacteroidetes ba... [more]
CBJ27043.11.200e-1030.20conserved unknown protein [Ectocarpus siliculosus][more]
XP_005848010.11.200e-1028.97hypothetical protein CHLNCDRAFT_57791 [Chlorella v... [more]
XP_002185368.11.600e-1027.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01070.1NO13G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596721gene_6901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01070.1NO13G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01070 ID=NO13G01070|Name=NO13G01070|organism=Nannochloropsis oceanica|type=gene|length=923bp
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGgtgagtttgtgttaagggtggtttactctt
ttaacaattcgtctccgatactccttcctagtcccctcccttcctccccc
cccctccctccttccctcccttcttcctttcccccattcctccatccccc
ctccacccaccagATGGAACTGCCGACCACGGATTAGACCCCAATAGATT
CAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTTGAAGAAC
AAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGAGGGAGGG
GAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGGAGAGAGA
ATTGTGGAAGACCTTGAGGAGGCATTACTTGCCGAGAGAAACGGGATACG
ATGAGAATGGAGAGGAGGAGTAA
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protein sequence of NO13G01070.1

>NO13G01070.1-protein ID=NO13G01070.1-protein|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPITPLLLLHAGLLTLAFQPSYHRHRQQRRPPFITLSASTSDKPLVAEG
IDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGV
VLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGA
RSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQL
EEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRRHYLPRET
GYDENGEEE*
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Synonyms
Publications