NO13G01070, NO13G01070 (gene) Nannochloropsis oceanica

Overview
NameNO13G01070
Unique NameNO13G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length923
Alignment locationchr13:340708..341630 -

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Properties
Property NameValue
DescriptionUPF0301 protein SAV_5129
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:340708..341630 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003774UPF0301
Homology
BLAST of NO13G01070 vs. NCBI_GenBank
Match: EWM21777.1 (Protein of unknown function DUF179 [Nannochloropsis gaditana])

HSP 1 Score: 284.3 bits (726), Expect = 3.900e-73
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 0
Query:   27 RQQRRPPFITLSASTSDKPLVAEGIDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGG 216
            R+ RR   ++L     DKPL+AEGI+I+  P G+P  L QG +LVAKPWEYNHFTSKSCLFLYK+D ETGSRGVVLE+PTAFTLSELAPPF++SVF+NHTVFLGGEQGGDMAVLLHPY  +PG RSVGGGL+YGGL GAEAM KEQE+  A+HGLD ++FKWWFNYMSWGPGQLE+Q   G    + GG
Sbjct:   40 RRGRRSTTLSL-----DKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGG 223          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: KOO23911.1 (hypothetical protein Ctob_001926 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.4 bits (228), Expect = 2.200e-15
Identity = 56/193 (29.02%), Postives = 103/193 (53.37%), Query Frame = 0
Query:   60 IPTP---LAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRRHYLPRE 250
            +P P   L  G +++A P  ++H+  +S + + ++ P+ G++GV+L   T +T+ +LAP    + F+ + VFLGG+ G D   ++H   ++PGA  VG G++ GG+   +A L+   +G     L P+RFK+++  + W P  L   I +G++ V+E       G +G         +R +W  +R   +  E
Sbjct:   16 LPRPAESLGPGSVILAHPGSFDHYFLESLVLILEHGPD-GTKGVLLNHETPWTVEDLAPDAKMAPFAANAVFLGGDAGRDTITMVHGEFELPGAVEVGQGVYTGGV---DAALRAVTEG----ALPPDRFKFFYKSVEWLPNALPVAITSGTFQVIELSPGFLFGQSG---------QRSMWAEVREELVKEE 191          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_005837874.1 (hypothetical protein GUITHDRAFT_103478 [Guillardia theta CCMP2712] >EKX50894.1 hypothetical protein GUITHDRAFT_103478 [Guillardia theta CCMP2712])

HSP 1 Score: 91.3 bits (225), Expect = 4.800e-15
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 0
Query:   67 GCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAP-PFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVG-GGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDV 212
            GC+LVA P E +HF   + + L ++  + GS+GVVLE  TAF L E+AP  F       +++F GG  G D  ++LH    +  ++ +G  G+F GG++  + ++ E   G A      ++ K++FN+  W PGQLE +I   +W V
Sbjct:  120 GCVLVASPEEVDHFFRHAVVLLLEHS-DGGSKGVVLEMATAFMLQEMAPAAFLEHPLGENSLFRGGSSGNDKVIMLHALEDVQTSKPIGRHGVFAGGMQEVKELVSE---GRA----SSDQVKFFFNHCEWLPGQLEREIEQKTWRV 258          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_024388538.1 (uncharacterized protein LOC112288523 [Physcomitrella patens] >XP_024388539.1 uncharacterized protein LOC112288523 [Physcomitrella patens] >PNR45708.1 hypothetical protein PHYPA_015479 [Physcomitrella patens])

HSP 1 Score: 86.7 bits (213), Expect = 1.200e-13
Identity = 52/186 (27.96%), Postives = 90/186 (48.39%), Query Frame = 0
Query:   67 GCLLVAKP---WEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSV--FSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRRHYLP 248
            GCLL+A P    E   +  +  +F++ +D   GS GV+L RPT ++L +L   F   +   S+  ++ GG+ G     ++H    +  +R +  G++ GG    +  ++  +         PN ++W+  +  WGPGQLE+++A G W +    K         VL+Q I L + LW  +  H  P
Sbjct:  145 GCLLIAHPNAFTESQQYFHRVVIFIFAHD-AGGSAGVILNRPTQYSLGQL-DEFKDLMPELSSCPLYFGGDVGPQCTQVIHGIPGLEDSREIMNGVYMGGTASIQDNIRSGQS-------TPNDYRWFLRFAGWGPGQLEQEVAAGVWYLASCSKR-------FVLKQCIQLPKPLWNEVMEHMGP 314          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: CBJ32813.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 86.3 bits (212), Expect = 1.600e-13
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = 0
Query:   67 GCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGG-GLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVM 213
            G +LVA    Y   T K+   +Y++     SR V +++   FT+ E++        SN+ +F GG+ GG+ A+++HP+  I G+R +G  GLF GG   A  +++E +         P  FK++FN++SW  G L+EQ+  G W V+
Sbjct:   29 GSVLVAGADNYGSMTFKAVALVYEHGEGGPSRAVCVDKGLDFTIGEMSTG-DLGPLSNNRLFRGGDDGGEAAIMIHPH-DIMGSRPLGDTGLFVGGFVTALDLVEENK-------AKPGDFKFFFNHLSWPAGALQEQVGKGLWKVV 166          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_005647700.1 (DUF179-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE23156.1 DUF179-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 0
Query:   66 QGCLLVAKPWEY---NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAP-PFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIA----LERELW 239
            +GCLL+A P  +     + +++ +F++++  E GS G++L +PT +T+  ++        F+N+ +FLGG+   +   +LH +GQ+P A  +  G+  GG   A+A + +      D       FKW+  Y  WG GQL+ + A+G W             +  VL+QG A      RE+W
Sbjct:   49 KGCLLIAHPLVFTTQQQYFAQAVIFIFEHS-EQGSAGLILNKPTQYTIGTMSGLEALCPEFNNNGLFLGGDVSPNSMHMLHCHGQLPEAVEIIRGINMGGFDAAKAAVSQGRMPATD-------FKWFTRYSGWGAGQLQRECASGVWFTAAAS-------SALVLQQGCADSADSGREMW 214          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_003082513.1 (Protein of unknown function UPF0301 [Ostreococcus tauri] >CAL56370.1 Protein of unknown function UPF0301 [Ostreococcus tauri])

HSP 1 Score: 84.3 bits (207), Expect = 5.900e-13
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 0
Query:   66 QGCLLVAKPWEY----NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTL 242
            +GCLLVA   E+     +F     L L  +  E GS G++L RPT + +  ++    S  F+ + ++ GG+ G      LH    + G+  V  G++ GG + A  ++  Q+DG+  H   P+ FK++  Y  W PGQLE +   G W  +   KE         L+Q I L + LW+ +
Sbjct:   72 KGCLLVAADQEFRMSQQYFHQAVILVLEHH--ENGSMGIILNRPTQYNMGYVSGE-PSGPFAENALYFGGDVGDGTVSFLHGREDVKGSVEVLPGVYLGGYESACELV--QQDGSTCH---PDEFKFFARYCGWAPGQLESECERGVWYPIAAAKE-------LSLKQVIQLPKPLWREI 236          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: OUS46153.1 (hypothetical protein BE221DRAFT_192138 [Ostreococcus tauri])

HSP 1 Score: 84.3 bits (207), Expect = 5.900e-13
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 0
Query:   66 QGCLLVAKPWEY----NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTL 242
            +GCLLVA   E+     +F     L L  +  E GS G++L RPT + +  ++    S  F+ + ++ GG+ G      LH    + G+  V  G++ GG + A  ++  Q+DG+  H   P+ FK++  Y  W PGQLE +   G W  +   KE         L+Q I L + LW+ +
Sbjct:  122 KGCLLVAADQEFRMSQQYFHQAVILVLEHH--ENGSMGIILNRPTQYNMGYVSGE-PSGPFAENALYFGGDVGDGTVSFLHGREDVKGSVEVLPGVYLGGYESACELV--QQDGSTCH---PDEFKFFARYCGWAPGQLESECERGVWYPIAAAKE-------LSLKQVIQLPKPLWREI 286          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: EJK76913.1 (hypothetical protein THAOC_01294 [Thalassiosira oceanica])

HSP 1 Score: 83.6 bits (205), Expect = 1.000e-12
Identity = 58/190 (30.53%), Postives = 98/190 (51.58%), Query Frame = 0
Query:   67 GCLLVAKPWEYNHFTSKSCLFLY-----KYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGG------GLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQ---IANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLR 243
            G +LV+  +E++HF  +S +F+Y         ET  R VV++ PTAF + E++P  +S + +N+T+F GG  G D  +LLH  G + G+    G      G++ GG+   +   K+ + G     +DP++ K++FNYM +G  QL++    +    WD     +   E V  +   +G     +LW  LR
Sbjct:   65 GSVLVSPSFEFDHFLMRSAIFVYAIGEDDQQDETIIRAVVIDHPTAFDIGEMSPTVTSRL-ANNTLFRGGYDGSDAVMLLHSAGGMDGSVETTGSEIGCSGIYEGGISSIQ---KQVDAGL----IDPSQCKFFFNYMEFGLKQLDDMFRTVGVPDWDSWTSIEIPPEMVLSSEYARG-----QLWAKLR 241          
BLAST of NO13G01070 vs. NCBI_GenBank
Match: XP_003057066.1 (predicted protein [Micromonas pusilla CCMP1545] >XP_003059356.1 predicted protein [Micromonas pusilla CCMP1545] >EEH56488.1 predicted protein [Micromonas pusilla CCMP1545] >EEH58711.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 62/200 (31.00%), Postives = 93/200 (46.50%), Query Frame = 0
Query:   66 QGCLLVAKPWEY----NHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRR--HYLPRETGYDENGEEE 260
            +GCLL+A   E+     +F     L L  +  E GS GV+L RPT + +  +     SS F+N+ ++ GG+ G      LH   ++ G   V  G++ GG   A  ++K   DGT    L P  FK++  Y  W PGQLE +   G W  +   ++         L+Q I L + LW+ +        R+T     GEEE
Sbjct:  180 KGCLLLASEEEFKLGQQYFHQAVILVLEHH--EKGSMGVILNRPTQYNMGYVGGD-DSSPFANNQLYFGGDVGDGTVSFLHGSSEVAGGSEVLPGVYLGGYDSACELVK---DGT----LKPTDFKFFARYCGWAPGQLESECERGVWYPVACSRQ-------LALKQVIQLPKPLWREVMELCGGELRQTSKRSYGEEE 362          
The following BLAST results are available for this feature:
BLAST of NO13G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21777.13.900e-7371.43Protein of unknown function DUF179 [Nannochloropsi... [more]
KOO23911.12.200e-1529.02hypothetical protein Ctob_001926 [Chrysochromulina... [more]
XP_005837874.14.800e-1535.37hypothetical protein GUITHDRAFT_103478 [Guillardia... [more]
XP_024388538.11.200e-1327.96uncharacterized protein LOC112288523 [Physcomitrel... [more]
CBJ32813.11.600e-1333.33conserved unknown protein [Ectocarpus siliculosus][more]
XP_005647700.12.700e-1329.28DUF179-domain-containing protein [Coccomyxa subell... [more]
XP_003082513.15.900e-1330.56Protein of unknown function UPF0301 [Ostreococcus ... [more]
OUS46153.15.900e-1330.56hypothetical protein BE221DRAFT_192138 [Ostreococc... [more]
EJK76913.11.000e-1230.53hypothetical protein THAOC_01294 [Thalassiosira oc... [more]
XP_003057066.11.700e-1231.00predicted protein [Micromonas pusilla CCMP1545] >X... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01070.1NO13G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596721gene_6901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01070.1NO13G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01070 ID=NO13G01070|Name=NO13G01070|organism=Nannochloropsis oceanica|type=gene|length=923bp
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGgtgagtttgtgttaagggtggtttactctt
ttaacaattcgtctccgatactccttcctagtcccctcccttcctccccc
cccctccctccttccctcccttcttcctttcccccattcctccatccccc
ctccacccaccagATGGAACTGCCGACCACGGATTAGACCCCAATAGATT
CAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTTGAAGAAC
AAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGAGGGAGGG
GAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGGAGAGAGA
ATTGTGGAAGACCTTGAGGAGGCATTACTTGCCGAGAGAAACGGGATACG
ATGAGAATGGAGAGGAGGAGTAA
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protein sequence of NO13G01070.1

>NO13G01070.1-protein ID=NO13G01070.1-protein|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPITPLLLLHAGLLTLAFQPSYHRHRQQRRPPFITLSASTSDKPLVAEG
IDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGV
VLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGA
RSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQL
EEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRRHYLPRET
GYDENGEEE*
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Synonyms
Publications