NO13G00880, NO13G00880 (gene) Nannochloropsis oceanica

Overview
NameNO13G00880
Unique NameNO13G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1187
Alignment locationchr13:288351..289537 +

Link to JBrowse

Properties
Property NameValue
Description1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:288351..289537 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0010309acireductone dioxygenase [iron(II)-requiring] activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR004313Acireductn_dOase_family
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Homology
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: EWM21750.1 (dihydroxy-3-keto-5-methylthiopentene dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 8.500e-83
Identity = 141/161 (87.58%), Postives = 154/161 (95.65%), Query Frame = 0 
Query:    1 MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNR 162
            ML+AWYMDDD T+DQREEHRL PNKPA+LE LQ LGVL+WTFDAD+Y+++P+FAAMR ERGYDYEDTCTVSRETMPNY+EKIKSF+EEHIHSDEEIRYCLDGSGYFDVRDGQDRWIR+KVEKNDLIVLPEGIYHRFTLD KNYIKALRLFKG P+WTPYNR
Sbjct:   20 MLDAWYMDDDTTMDQREEHRLKPNKPATLEDLQTLGVLHWTFDADSYEDSPEFAAMRAERGYDYEDTCTVSRETMPNYEEKIKSFYEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRIKVEKNDLIVLPEGIYHRFTLDNKNYIKALRLFKGVPIWTPYNR 180
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_005855319.1 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Nannochloropsis gaditana CCMP526] >EKU21038.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.5 bits (807), Expect = 1.100e-82
Identity = 141/160 (88.12%), Postives = 153/160 (95.62%), Query Frame = 0 
Query:    1 MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYN 161
            ML+AWYMDDD T+DQREEHRL PNKPA+LE LQ LGVL+WTFDAD+YK++P+FAAMR ERGYDYEDTCTVSRETMPNY+EKIKSF+EEHIHSDEEIRYCLDGSGYFDVRDGQDRWIR+KVEKNDLIVLPEGIYHRFTLD KNYIKALRLFKG P+WTPYN
Sbjct:    1 MLDAWYMDDDTTMDQREEHRLKPNKPATLEDLQTLGVLHWTFDADSYKDSPEFAAMRAERGYDYEDTCTVSRETMPNYEEKIKSFYEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRIKVEKNDLIVLPEGIYHRFTLDNKNYIKALRLFKGVPIWTPYN 160
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_002955803.1 (aci-reductone dioxygenase [Volvox carteri f. nagariensis] >EFJ43228.1 aci-reductone dioxygenase [Volvox carteri f. nagariensis])

HSP 1 Score: 249.6 bits (636), Expect = 7.400e-63
Identity = 113/180 (62.78%), Postives = 135/180 (75.00%), Query Frame = 0 
Query:    2 LEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQMAA 182
            ++AWYMDD  + DQR  HR +PN+P  L  L++LGVLYW  DAD Y+ +P+ AA+R    Y Y +   +S  T+PNYDEKIK F+EEHIHSD+EIRY LDGSGYFDVRD +DRWIR+   K DLIVLPEGIYHRFTLDT NY KA+RLF G P+WTPYNRPQE H SR +Y + F   AA
Sbjct:   23 IDAWYMDDS-SEDQRLPHRRSPNEPCPLSKLRELGVLYWRLDADKYETDPRLAAIRKVHNYSYMEIVNISPTTLPNYDEKIKMFYEEHIHSDDEIRYVLDGSGYFDVRDLEDRWIRIDCRKGDLIVLPEGIYHRFTLDTNNYTKAMRLFVGAPIWTPYNRPQEEHASRQRYLEKFSGAAA 201
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: KXZ53347.1 (hypothetical protein GPECTOR_7g1242 [Gonium pectorale])

HSP 1 Score: 248.4 bits (633), Expect = 1.700e-62
Identity = 112/175 (64.00%), Postives = 134/175 (76.57%), Query Frame = 0 
Query:    2 LEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGF 177
            +EAWYMD   T DQR  HRL PN+P SL  L++LGVLYW  DAD Y+++P+ AA+R    Y Y +   +S  T+P Y++KIK F+EEHIHSD+EIRY LDGSGYFDVRD +DRWIR+  +K DLIVLPEGIYHRFTL+T NY KA+RLF G PVWTP+NRPQE HPSR KY   F
Sbjct:   23 IEAWYMDSS-TEDQRLPHRLEPNQPCSLAKLRELGVLYWKLDADKYEDDPRLAAIRKVYNYSYTEIVNISPTTLPGYEDKIKMFYEEHIHSDDEIRYVLDGSGYFDVRDFEDRWIRIDCQKGDLIVLPEGIYHRFTLNTNNYTKAMRLFVGAPVWTPHNRPQEEHPSRRKYLDKF 196
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: GAX80334.1 (hypothetical protein CEUSTIGMA_g7772.t1 [Chlamydomonas eustigma])

HSP 1 Score: 248.4 bits (633), Expect = 1.700e-62
Identity = 111/180 (61.67%), Postives = 140/180 (77.78%), Query Frame = 0 
Query:    2 LEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQMAA 182
            + AWYMDD    DQR  H+ NP KPASL+VLQ LGVLYW  DAD Y+ +P+ AA+R  RGY + +   +S++T+P+Y+ KIK+F+EEHIHSDEEIRY LDGSGYFDVRD  D+WIR+  +K DLI+LPEGIYHRFTLD  N+ KA+RLF G PVWTP+NRPQ+ H SR KY + F ++A+
Sbjct:   21 IAAWYMDDS-IEDQRLSHQQNPEKPASLQVLQNLGVLYWKLDADQYETDPRLAAIRKVRGYSHVEIINISKDTLPDYENKIKTFYEEHIHSDEEIRYILDGSGYFDVRDLDDQWIRIHCKKGDLIILPEGIYHRFTLDETNHTKAMRLFVGEPVWTPFNRPQDEHTSRRKYLEKFGRVAS 199
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_007902920.1 (PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Callorhinchus milii])

HSP 1 Score: 244.6 bits (623), Expect = 2.400e-61
Identity = 110/181 (60.77%), Postives = 139/181 (76.80%), Query Frame = 0 
Query:    1 MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQMAA 182
            ML+AWYMDD    DQR+ H+L PNKP SL+ L+ LGVLYW  +AD Y+++P+   +R ER Y + D  T+ ++T+PNY+EKIKSFFEEHIH DEEIRY +DGSGYFDVRD +++WIR+ ++K DLI LP GIYHRFTLD  NY KA+RLF G PVWTPY RP E   +R KY Q FL+++A
Sbjct:    1 MLQAWYMDDS-AEDQRKPHKLEPNKPVSLQQLEPLGVLYWKLNADKYEDDPELQKIRKERNYSWMDIITIHKDTLPNYEEKIKSFFEEHIHLDEEIRYIIDGSGYFDVRDKEEQWIRIAMQKGDLITLPAGIYHRFTLDDNNYTKAMRLFVGDPVWTPYARPAEEFEARKKYVQ-FLKLSA 179
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: PTQ38243.1 (hypothetical protein MARPO_0052s0042 [Marchantia polymorpha])

HSP 1 Score: 244.6 bits (623), Expect = 2.400e-61
Identity = 111/180 (61.67%), Postives = 132/180 (73.33%), Query Frame = 0 
Query:    2 LEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQMAA 182
            +EAWYMDD  T DQR  HRL PNKP S   L  LGVL W  DAD ++ +P+   +R ER Y Y+D   VS  ++P Y+ KIKSF+EEHIH+DEEIRYC+DGSGYFDVRD  DRWIR+  +K D+IVLP G+YHRFTLD  NYIKA+RLF G PVWTPYNRPQ++HP R  Y   FL+  A
Sbjct:   14 VEAWYMDDS-TEDQRLPHRLVPNKPVSARDLADLGVLQWHLDADKFENDPELEKIRKERNYTYQDIINVSPTSLPEYERKIKSFYEEHIHTDEEIRYCIDGSGYFDVRDSADRWIRIWTKKGDMIVLPAGLYHRFTLDESNYIKAMRLFIGEPVWTPYNRPQDDHPIRRDYINNFLKSHA 192
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_001693929.1 (aci-reductone dioxygenase [Chlamydomonas reinhardtii] >PNW76229.1 hypothetical protein CHLRE_12g542850v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 244.2 bits (622), Expect = 3.100e-61
Identity = 109/175 (62.29%), Postives = 132/175 (75.43%), Query Frame = 0 
Query:    2 LEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGF 177
            +EAWYMDD    DQR  H+L+PN+P  L  L+ LGVLYW  DAD ++ +P+ AA+R    Y Y +   +S++T+P+Y+ KIKSF+ EHIHSD+EIRY LDGSGYFDVRD  DRWIR+   K DL+VLPEGIYHRFTLDT NY KA+RLF G PVWTP+NRPQE HPSR KY   F
Sbjct:   24 IEAWYMDDSDE-DQRLPHKLSPNQPCPLSALRDLGVLYWKLDADKHETDPRLAAIRKVYNYSYTEIVNISKDTLPDYEAKIKSFYLEHIHSDDEIRYILDGSGYFDVRDHSDRWIRIATRKGDLLVLPEGIYHRFTLDTDNYTKAMRLFVGAPVWTPHNRPQEEHPSRAKYLDKF 197
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_024400472.1 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 isoform X1 [Physcomitrella patens] >A9SCJ6.1 RecName: Full=1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3; AltName: Full=Acireductone dioxygenase (Fe(2+)-requiring) 3; Short=ARD 3; Short=Fe-ARD 3)

HSP 1 Score: 243.4 bits (620), Expect = 5.300e-61
Identity = 108/178 (60.67%), Postives = 133/178 (74.72%), Query Frame = 0 
Query:    1 MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQ 179
            ++EAWYMDD    DQR  H  NP +  SL+ L +LG+L+W  DAD Y+ +P    +R ERGY YED   VS E +PNY+ KIK+F+EEHIH+DEEIRYCLDGSGYFDVRD +DRWIR+ V K D+IVLP G YHRF+LD  NY+KA+RLF G P+WTPYNRPQ+ HP R +Y   FL+
Sbjct:    9 LMEAWYMDDS-AEDQRMPHHRNPPEYVSLKKLAELGILHWVLDADNYETDPDLKHIRKERGYSYEDFVDVSPEALPNYETKIKNFYEEHIHTDEEIRYCLDGSGYFDVRDPEDRWIRIWVHKGDMIVLPAGCYHRFSLDANNYLKAMRLFVGEPIWTPYNRPQDEHPVRKEYINLFLK 185
[Close]
BLAST of NO13G00880 vs. NCBI_GenBank
Match: XP_002399605.1 (acireductone dioxygenase, putative [Ixodes scapularis] >B7PRF6.1 RecName: Full=1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; AltName: Full=Acireductone dioxygenase (Fe(2+)-requiring); Short=ARD; Short=Fe-ARD >EEC09178.1 acireductone dioxygenase, putative [Ixodes scapularis])

HSP 1 Score: 243.4 bits (620), Expect = 5.300e-61
Identity = 106/179 (59.22%), Postives = 139/179 (77.65%), Query Frame = 0 
Query:    1 MLEAWYMDDDPTVDQREEHRLNPNKPASL-EVLQKLGVLYWTFDADTYKENPKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCLDGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLFKGTPVWTPYNRPQENHPSRTKYAQGFLQ 179
            M++AWYMD D T DQREEH+L+P  P S+ EV  K GVLYW  +ADTY+++ +   +R +RGY Y D   +SR+ +PNY++KIK+FF+EH+HSDEEIR+ L GSGYFDVRD +D+WIR++V + DL+VLP GIYHRFTLD +NYIKA+RLF G PVWTP NRP + HP+R +Y +   Q
Sbjct:    1 MVQAWYMDSDTTTDQREEHQLDPPVPVSIDEVRDKSGVLYWKLNADTYEQDGELEKIRKDRGYSYTDVIEISRDKLPNYEDKIKTFFQEHLHSDEEIRFILAGSGYFDVRDCEDKWIRIQVTRGDLLVLPAGIYHRFTLDKQNYIKAMRLFVGEPVWTPINRPADEHPARFQYIESLRQ 179
The following BLAST results are available for this feature:
BLAST of NO13G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21750.18.500e-8387.58dihydroxy-3-keto-5-methylthiopentene dioxygenase [... [more]
XP_005855319.11.100e-8288.131,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
XP_002955803.17.400e-6362.78aci-reductone dioxygenase [Volvox carteri f. nagar... [more]
KXZ53347.11.700e-6264.00hypothetical protein GPECTOR_7g1242 [Gonium pector... [more]
GAX80334.11.700e-6261.67hypothetical protein CEUSTIGMA_g7772.t1 [Chlamydom... [more]
XP_007902920.12.400e-6160.77PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopenten... [more]
PTQ38243.12.400e-6161.67hypothetical protein MARPO_0052s0042 [Marchantia p... [more]
XP_001693929.13.100e-6162.29aci-reductone dioxygenase [Chlamydomonas reinhardt... [more]
XP_024400472.15.300e-6160.671,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
XP_002399605.15.300e-6159.22acireductone dioxygenase, putative [Ixodes scapula... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001807NSK001807Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00880.1NO13G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596790gene_6923Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100213g6gene8676Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00880.1NO13G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00880 ID=NO13G00880|Name=NO13G00880|organism=Nannochloropsis oceanica|type=gene|length=1187bp
ATGTTGGAGGCCTGGTACATGGACGACGACCCCACAGTGGACCAGCGGGA
GGAGCACCGGCTGAATCCGAATAAGCCCGCATCATTGGAGGTGCTCCAGA
AGCTGGGCGTATTGTATTGGACGTTTGACGCCGATACGTACAAGGAAAAC
CCTAAGTTTGCGgtgcgtggagggaaagggagggaagggagagggaaggg
aggaatctgtagggtttggttgagtctgcgcgctccagttattgccacaa
ttgaaaatgatgtatagggatttaaatatgatgttgagcgtgcataagtt
cccttgggcccggatcgtgccctgtgaggaattgatgacggtgagacgat
gcacgtttatgctcctgtctgttctcacatacatcttctccggtatacca
attcgaatgcagGCAATGCGGGTAGAACGGGGCTATGATTATGAGGATAC
ATGCACGGTCTCAAGGGAAACGATGCCAAATTACGACGAAAAGATCAAGA
GCTTCTTCGAAGAGCATATTCATTCGGACGAGgtacgtcgagcacaggag
gcctcaggggaggggaatcgagggcggacaagttaatggtgcgacgacga
aatgcgggcaggaaaatgacgaaaactaagcacaattacgcgagaagata
gaaaattaatggtgggatacatttcttagacgacatgcatttattgataa
taagtcgagtcgactttctttttcttttcacctttcaactcacccactaa
tacccatcccctctactcacaaccctttcaaagGAGATCCGCTACTGCTT
GGACGGATCTGGGTATTTTGACGTGCGGGACGGGCAAGACCGTTGGATTC
GAGTCAAGGTGGAGAAGAACGACTTGATCGTTCTGCCGGAAGGCATTTAC
CACCGGTTCACCCTCGACACGAAGAATTATATCAAGGCCCTTCGTCTGTT
TAAGGGCACGCCGGTTTGGACGCCCTACAACAGgtacgaatgcgtgtgcg
tatacacgttcacaattgtctttgggagatattgagactattttatcgct
ttgcggagcgtagttttcggtttttcatatcacctcgcgactcgataact
tccacatggtaattaatgcacagGCCGCAGGAGAATCACCCTAGCCGTAC
CAAGTACGCTCAAGGTTTCCTGCAAATGGCGGCTTAA
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protein sequence of NO13G00880.1

>NO13G00880.1-protein ID=NO13G00880.1-protein|Name=NO13G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKEN
PKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCL
DGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLF
KGTPVWTPYNRPQENHPSRTKYAQGFLQMAA*
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Synonyms
Publications