NO13G00820, NO13G00820 (gene) Nannochloropsis oceanica

Overview
NameNO13G00820
Unique NameNO13G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3265
Alignment locationchr13:270448..273712 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:270448..273712 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO13G00820 vs. NCBI_GenBank
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-10
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 0 
Query:  323 GVDVEAFLRVLVAVTESDADGYVVTDASQTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGERLLARLKGGKE---WKRECTVRPHPIRIPR 427
            GV  E ++R+  A+ +  ADG+VVTD + T G SLWTF +RLLG   LG + L E+ TW ++   +T++++  EEG   +   +   E   W+RE   RP  +R+PR
Sbjct:  139 GVHHEPWIRLFGAILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPR 245
The following BLAST results are available for this feature:
BLAST of NO13G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29520.13.700e-1039.25hypothetical protein Naga_100006g93 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001815NSK001815Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00820.1NO13G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596815gene_6929Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00820.1NO13G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00820 ID=NO13G00820|Name=NO13G00820|organism=Nannochloropsis oceanica|type=gene|length=3265bp
ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT
GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC
AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG
AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC
CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGgtattgaca
acaagaatgaccagggagcgaccacaatcaatttccccaccacccttccc
cccctcctcccccgcccctcggcgttgtttccaccgccctccctcaccgg
cactccatgcgctacttgctttacccacactacaagcctcggcctctgcg
tctccctgttgatattgatgccttacttcttgtggtcggtgctctcgtag
tgcccaatccgaaagggtttatcgtcacagATGAGACGCTGGTGCACGGC
CACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGGG
AAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCGT
TGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGGG
GCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCTT
GCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATCG
TGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCAG
TTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGgta
catgatgattgtcgagcagtatctgtcgacggtgtggatgagtcatgaag
ccctcgatatcgagagggcgatttgtgtgcacaatcgtctggcggggggg
cggcaggggtgggtgggaaaagGCGGAATCTGTGGAGAACGGCAGCGGCG
GAGGAGGCCTTGGCCAAGAAGGAGGAGACCCCGTTCCAGGCACTGgtgag
tggaaatagggagggagagaggaagggcagtttcttattgattaatgttt
aattcatgttcctgttgccgtcaagtgtcagtctagctgtttacgcactt
ttcgaaagtaggaatgggggaaatcggggatgaaactcacacaactcata
aacgcactaaactgaatacagGTCAAGGCCGTGGCGCAAGTGAGGGGGGA
TAGCGGGCTGCTACACCCACATTACGTTCCAAGACAACAACAGCAGCAGC
AGCAGCAGCAGCAGTTGTTGTTGATGAAGGGAGATAGGGCAGAAAAGGGT
GAAATACAAAGAGGAGAAGATGGAGAGGGAGGAAAAGGAAAAGGAGGAGT
AGGGGAAGAGGCAGTGGCAGTGGACGGGAGAAAGGGAGgtaagggtgaga
gggacggaaggagcggcaaggtgccgacaaatgacactctcaattcaaaa
cccgcagAAGAAGCAGTCGCAACGGCAGCGCCTGGAGGAGGAGGGGAGGG
AGGGAGGGAGGGGGGAAGGGGAACGGGGGTTGACGTGGAAGCGTTCTTGA
GGGTGTTGGTTGCCGTGACAGAGAGTGATGCGGATGGATACGTGGTGACA
GATGCGAGTCAGACGGGCGGACATAGTCTGTGGACATTTATTGTGAGATT
GCTGGGGCCGCCGTGCTTGGGCCTTAAACCCCTTACAGAGGCCAACACCT
GGTTCGCCCTCGCCAAGGGGATGACGCGGATGAAGGAGAGTGGGGAAGAG
GGAGAGAGATTGCTAGCGCGACTGAAGGGGGGCAAGGAGTGGAAGAGGGA
ATGCACGGTGCGGCCACATCCAATACGGATACCACGGGGAGGGGGGGGCG
AGGTGAAAGTGGTGGAGGAGGGGGAGGGGAAAGGGGAGGAGGAGGGGAAA
GGGAATGACTCGGGAGAGGGGTTGGAGGAGGAGAAGGAGGGGAATGAAAA
GGAGGGAGCGATGGCCAACAGCAATGCAATGGAGGCGGAGAGAAAATCCT
CTTCTTCCTCTTCCTCCGATTCCGACGAGGCCTCCTCCTCCAGCACCGCC
GCCGCCGCCACCATTACCGCTGCTGCGTCCCCCCCCACCCCCGCCATCTC
CTCTTCGACCCCCTTCCCTTCCACCGGCATTCGAAAAGTCCGTGGCACAT
TCCTGACAGGGATCACCCTTCGTCCCCCGGGGCCTGGACTGGAAGCAGCT
CTGTCCAATGCGATTCGAGAGCTCGCCCCTACATTCCCGCCTGAGCAGTA
CAGAGACGCTTTTGAGGCTTATAACACCTTGTGGGAGTCTCACGAGACAT
TGCCAATGTCGCAATTGGTACCCCTAAGCTCGACTCACCCCATGGCCTCT
GGGCAGGATGGTTGTAGTGTGGGCAGTGGCAGCGGTGGAGGTCGGGGCGG
AGGGAGGGGAAAGTATGCTTCCGGTACTTCTACGTCAGGAGGTTGTGCGG
ATTATGATGGCAGGAAGGTGGCGCGGGGTCGCAAGCGCAAGACTCAATCG
GAGGGACCAGGAGCAAGAGTAGATGAACGAACAGGGGCAGAGGAGGCAGC
AATGGAAGAAGGAGGAGATGGAGGAGGGGCGGGCGAGAGCGGGAAAGGCA
AGGTGTTTAAGAGGGATAAGGCCACGACCAGCAAGGCGGGCAAGAACGAG
GACATGTCTGGTAATAACGCTCAGCACTTCGCGTCTTCTGCTTCTACCCC
CTCCTCATCTTCCACGTATACTCCTCCCCTCGGCATGGGGGCGAGTGCAA
TTCACCCTCTGATCGTCCGGGCGGATGGGGAGGGAGGGGCGGAGGGACAG
GAGGTGGTGTTGCCACCAGTCTTGCCTTTGCCTTCGTCAGTCCGTCATAT
CGAGAGTTCCATTATGGTGGAAATGTAGAGACGTATTGAGGAAGGAGTAG
GAATTGAGAAGGCTGATATGTAGACGAGGGAAGAAAAGGAAAGGAGAAGA
AGAGAGAGGACGATGTAAAGAAGAGAAAGTGCAGGAGAAGCGGAATTTTG
GATGGATCCACATGATAATGAAAATGAGTAAGAGTGAGTCTTCTTGAATA
AGAATATGCAATTGAGACCGGAGAATCGGAGCCATTTATATACATATACA
TACCGACATCAAAATACCAACACCACGACATCGCAAAGGATGGGGCATAC
ACGAATGCGCACCCAGCAAAAGCGACGAATACATCAGAAGAAGCAAAACC
AAGCAGCCGATGTCA
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protein sequence of NO13G00820.1

>NO13G00820.1-protein ID=NO13G00820.1-protein|Name=NO13G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MPEDTSRKTNALEEEELAIEINENNHGATPTAPQAAGSCSVASTNTTSPG
SAPGTGGVAAAPPTGTATTSGSKSSTTAFDDETLVHGHSLWRFLVRLFGS
SCLGRSEANESGTWRSLTRALSQWGDKKPERLDALLGATRWERECRTSEY
FMRLPRGDLGEPIAVKGTFIVGISLKNPLSDPSFHPQFQAALNAVAPGLS
PARRNLWRTAAAEEALAKKEETPFQALVKAVAQVRGDSGLLHPHYVPRQQ
QQQQQQQQLLLMKGDRAEKGEIQRGEDGEGGKGKGGVGEEAVAVDGRKGE
EAVATAAPGGGGEGGREGGRGTGVDVEAFLRVLVAVTESDADGYVVTDAS
QTGGHSLWTFIVRLLGPPCLGLKPLTEANTWFALAKGMTRMKESGEEGER
LLARLKGGKEWKRECTVRPHPIRIPRGGGGEVKVVEEGEGKGEEEGKGND
SGEGLEEEKEGNEKEGAMANSNAMEAERKSSSSSSSDSDEASSSSTAAAA
TITAAASPPTPAISSSTPFPSTGIRKVRGTFLTGITLRPPGPGLEAALSN
AIRELAPTFPPEQYRDAFEAYNTLWESHETLPMSQLVPLSSTHPMASGQD
GCSVGSGSGGGRGGGRGKYASGTSTSGGCADYDGRKVARGRKRKTQSEGP
GARVDERTGAEEAAMEEGGDGGGAGESGKGKVFKRDKATTSKAGKNEDMS
GNNAQHFASSASTPSSSSTYTPPLGMGASAIHPLIVRADGEGGAEGQEVV
LPPVLPLPSSVRHIESSIMVEM*
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Synonyms
Publications