NO13G00710, NO13G00710 (gene) Nannochloropsis oceanica

Overview
NameNO13G00710
Unique NameNO13G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1886
Alignment locationchr13:238126..240011 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone deacetylase 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:238126..240011 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016575histone deacetylation
GO:0016043cellular component organization
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0004407histone deacetylase activity
GO:0016787hydrolase activity
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR023696Ureohydrolase_domain
IPR023801His_deacetylse_dom
IPR003084His_deacetylse_1
IPR000286His_deacetylse
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO13G00710 vs. NCBI_GenBank
Match: XP_005855159.1 (histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526] >EKU21200.1 histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 732.3 bits (1889), Expect = 8.300e-208
Identity = 358/436 (82.11%), Postives = 372/436 (85.32%), Query Frame = 0
Query:    4 APTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPTGAQIQTGQPGTSITPADLAVPMTAREREEEAEDKNPDRRGGTEXXXXXXEGGRKEHPLEMMPEG 400
            APTKRRISYFYD++IGN+HYGQGHPMKPHRVRMTHSLVVYYWLYRNME+LRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQK+ADIVINW+GGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDV D G+G+GKNYAINFPLHDGMDDESF SVFRPVIGKVMETF+PGAIVLQCGADSLSGD                                        RCW YETSVL  TEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLF ILS VSPTGAQIQTGQPGTS+TP D A+P TARERE E E+++PD R G         GGRKEHPLEMMPEG
Sbjct:    3 APTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVG------DGGGGRKEHPLEMMPEG 432          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: EWM21734.1 (histone deacetylase 1 [Nannochloropsis gaditana])

HSP 1 Score: 728.0 bits (1878), Expect = 1.600e-206
Identity = 356/435 (81.84%), Postives = 370/435 (85.06%), Query Frame = 0
Query:    5 PTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPTGAQIQTGQPGTSITPADLAVPMTAREREEEAEDKNPDRRGGTEXXXXXXEGGRKEHPLEMMPEG 400
            PTKRRISYFYD++IGN+HYGQGHPMKPHRVRMTHSLVVYYWLYRNME+LRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQK+ADIVINW+GGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDV D G+G+GKNYAINFPLHDGMDDESF SVFRPVIGKVMETF+PGAIVLQCGADSLSGD                                        RCW YETSVL  TEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLF ILS VSPTGAQIQTGQPGTS+TP D A+P TARERE E E+++PD R G         GGRKEHPLEMMP G
Sbjct:   60 PTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKSFDVPVLALGGGGYTLRNVPRCWVYETSVLQGTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFTILSQVSPTGAQIQTGQPGTSMTPPDAALPETARERESEMEERDPDTRVG------DGGGGRKEHPLEMMPGG 488          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: XP_002181323.1 (histone deacetylase 1 isoform [Phaeodactylum tricornutum CCAP 1055/1] >EEC47246.1 histone deacetylase 1 isoform [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 583.6 bits (1503), Expect = 4.800e-163
Identity = 290/429 (67.60%), Postives = 324/429 (75.52%), Query Frame = 0
Query:    8 RRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPADLAVPMTAREREEEAEDKNPDRRGGTEXXXXXXEGGRKEHPLEM 396
            RR+SYFYDAEIGNYHYGQGHPMKPHRVRMTH+LVV Y LYR MEV RP+ V  + MTRFHSDDYINFLRVITPDNMQ+Y+R LQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN+   DIVINWAGGLHHAKK+EASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMTVSFHKFGEYFPGTGDV D GY  GKNYAINFPL+DGMDD+S+ S+FRPVIGK+ME F+PGA+VLQCGADSLSGD                                        RCW YETSVL   ++ D+LPF+DYFEY+GPDY+LHLPVSNMENLN++ YL+  K QL DILS V P    QIQTGQ  +   P  +A+ +   + E  AE+ NPD R   E      + GRKEH  E+
Sbjct:    5 RRVSYFYDAEIGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTAMTRFHSDDYINFLRVITPDNMQDYIRPLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNENRVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDVGYAQGKNYAINFPLNDGMDDDSYESIFRPVIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSAQGHANCVEFVRSFNIPMLVLGGGGYTLRNVPRCWTYETSVLTGEKVSDELPFNDYFEYFGPDYRLHLPVSNMENLNSRAYLDKTKNQLLDILSQVEPVPSVQIQTGQIDSQTNPRSMAMEV---DDEPPAEESNPDARVTRE------DTGRKEHASEL 424          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: XP_002291445.1 (histone deacetylase 1p [Thalassiosira pseudonana CCMP1335] >EED91552.1 histone deacetylase 1p [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 569.7 bits (1467), Expect = 7.200e-159
Identity = 275/432 (63.66%), Postives = 324/432 (75.00%), Query Frame = 0
Query:    6 TKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPADLAVPMTAREREEEAE-DKNPDRRGGTEXXXXXXEGGRKEHPLEM 396
            T RR+SYFYDAE+GNYHYGQGHPMKPHRVRMTH+LVV Y LY+ M+V RP+ +  + MTRFHSDDYINFL+VITPDNM ++ RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN+ +AD+VINW+GGLHHAKK+EASGFCY+NDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMTVSFHKFGEYFPGTGDV D+GY DGKNYAINFPL+DGMDDE++ S+F+PV+ KVME F+PGA+VLQCGADSLSGD                                        RCW YET+V++   + ++LPF+DY+EY+GPDY LHLPVSNMENLN+K YL   K QL DIL +V P  G QIQTGQ  + + P  +++ +    + +      NPD RG +         G KEHP E+
Sbjct:   23 TSRRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVNYGLYKQMDVFRPRLIQSNAMTRFHSDDYINFLKVITPDNMTDFTRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNEDNADVVINWSGGLHHAKKAEASGFCYINDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTVSFHKFGEYFPGTGDVLDTGYADGKNYAINFPLNDGMDDEAYHSIFKPVMSKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHAECVNFVRSFNIPMLVLGGGGYTLRNVPRCWTYETAVVVGEPVNENLPFNDYYEYFGPDYTLHLPVSNMENLNSKEYLSKTKNQLIDILRDVEPVPGTQIQTGQVESQLNPRGVSMEIDEPSKSDGGNGSNNPDERGDSRL------DGGKEHPAEL 448          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: XP_009032352.1 (hypothetical protein AURANDRAFT_69603 [Aureococcus anophagefferens] >EGB12698.1 hypothetical protein AURANDRAFT_69603 [Aureococcus anophagefferens])

HSP 1 Score: 567.0 bits (1460), Expect = 4.600e-158
Identity = 286/450 (63.56%), Postives = 320/450 (71.11%), Query Frame = 0
Query:    2 ATAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPAD-------------LAVPMTAREREEEAEDKNPDRRGGTEXXXXXXEGGRKEHPLEMMP 398
            A++   RR++YFYDAEIGN+HYGQGHPMKPHRVRMTH+LVV Y LYR MEV RPKPV  + MTRFHSDDYINFLR+ITPDNM EY+RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGA  LNQ+ +D+VINWAGGLHHAKKSEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHKFGEYFPGTGD  D GY +GKNYAINFPLHDGMDD SF S+F P+IGK+ME F+PGA+VLQCGADSLSGD                                        R W YETSVLL TE+KD LP++DYFEYYGPDY+LH+PVSNMENLN+  YLE IK QLF +L +V    G QI++ Q     T  D                       + E  D NPD +G ++          +EHP E  P
Sbjct:    3 ASSGQSRRVAYFYDAEIGNFHYGQGHPMKPHRVRMTHNLVVNYGLYRMMEVFRPKPVNAALMTRFHSDDYINFLRIITPDNMHEYLRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAVRLNQQWSDVVINWAGGLHHAKKSEASGFCYVNDCVLGILELLKRHQRVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGEYFPGTGDAHDVGYDEGKNYAINFPLHDGMDDASFKSIFEPIIGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSLKGHADCVKYVMTFGVPMLVLGGGGYTLRNVPRVWTYETSVLLGTEVKDVLPYNDYFEYYGPDYRLHMPVSNMENLNSTEYLEHIKTQLFGVLKDVEAVPGVQIKS-QADDMDTSGDGXXXXXXXXXXXXXXXXXXDDVSKAEENDNNPDAKGTSD---------NREHPAEFFP 442          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: OEU15542.1 (class I RPD3 type histone deacetylase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 565.1 bits (1455), Expect = 1.800e-157
Identity = 274/401 (68.33%), Postives = 309/401 (77.06%), Query Frame = 0
Query:    8 RRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPADLAVPMTAREREEEAE 368
            RR+SYFYDAE+GNYHYGQGHPMKPHRVRMTH+LVV Y LYR MEV RP+ V  + MTRFHSDDYINFL+VITPDNM +Y+RQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAA LN    DIVINWAGGLHHAKK+EASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFY+T+RVMT SFHKFGEYFPGTGDV D G+ DGKNY+INFPL+DGMDD+S+ S+FRPVIGK+ME F+PGAIVLQCGADSLSGD                                        RCW YET+VL   E+KD+LPF+DYFEY+GPDY+L+LPVSNMENLN+  YLE  K QL +ILS+V P    QIQTGQ  + + P  + + +     +E  E
Sbjct:    6 RRVSYFYDAEVGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTAMTRFHSDDYINFLKVITPDNMGDYVRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARLNDNAVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGVEEAFYSTNRVMTCSFHKFGEYFPGTGDVHDVGHADGKNYSINFPLNDGMDDKSYKSIFRPVIGKIMEMFAPGAIVLQCGADSLSGDRLGCFNLSVKGHADCVRYVRSFGIPMLVLGGGGYTLRNVPRCWTYETAVLTGEEVKDELPFNDYFEYFGPDYRLNLPVSNMENLNSPEYLEKTKNQLLEILSDVEPVPSVQIQTGQVESQLNPRGMNLEVDGPTEDERKE 406          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: CBJ29452.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 554.7 bits (1428), Expect = 2.400e-154
Identity = 283/437 (64.76%), Postives = 313/437 (71.62%), Query Frame = 0
Query:    3 TAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPADLAVPMTAREREEEAEDKNPDRRGGTEXXXXXXEGGRKEHPLEMMPE 399
            T   KRR+SYFYDAEIGNYHYGQGHPMKPHRVRMTH+LVV Y LYR MEV RPKP+    MTRFHSDDYINFLRVIT DNMQ    QLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGA  LN K +D+VINWAGGLHHAKKSEASGFCYVNDCVLAILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHKFGEYFPGTGDVKD G   GKNYAINFPL DG++D+S+ S+FRPVI KVME +SP AIV+QCGADSLSGD                                        RCWAYET VLLDTE  D LP++DYFEYYGPDY+LH+P SNME++N +  LE  K QLF+IL ++    G  I+TG        A++  P T R  EE+ E    D R   E        GR++H  E + E
Sbjct:    8 TGGNKRRVSYFYDAEIGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRQMEVFRPKPISSQHMTRFHSDDYINFLRVITQDNMQHNYTQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAIRLNNKQSDVVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKTHQRVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGEYFPGTGDVKDVGVAQGKNYAINFPLADGINDQSYRSIFRPVIEKVMEHYSPEAIVMQCGADSLSGDRLGCFNLSLKGHADCVQYVKSFNVPLLVLGGGGYTLRNVPRCWAYETGVLLDTEPSDMLPYNDYFEYYGPDYRLHMPTSNMEDMNKRETLEETKIQLFEILRSLEAVPGVPIETG--------AEVKTPATLRMPEEDEEMTEADDRPTGE--------GRRQHDAEQVGE 428          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: GAY04040.1 (histone deacetylase, putative [Pythium insidiosum])

HSP 1 Score: 533.9 bits (1374), Expect = 4.400e-148
Identity = 246/373 (65.95%), Postives = 288/373 (77.21%), Query Frame = 0
Query:    2 ATAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSP 335
            +T+ TKRR++YFYD+EIGNYHYGQ HPMKPHRVRM H+L+  Y L ++M++ RP+ V   E+TRFHSDDYI+FLR++TPDNM +Y+RQLQRFNVGEDCPVFDGLFEFCQLY S SIGGAA LN   ADIVINW+GGLHHAK+ EASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMT SFHK+GEYFPGTGD+KD GYGDGKNYA+NFP+ DGMDDESF++VFR VI K+ME F+PGA+VLQCG DSLSGD                                        RCW YETSVL   E+ D +P++DYFEYYGP+Y+LH+PVSNMENLNT  YL  +K+ L++ L  + P
Sbjct:    7 STSATKRRVAYFYDSEIGNYHYGQNHPMKPHRVRMAHNLIANYGLTKHMQIFRPRLVEWEELTRFHSDDYIHFLRLVTPDNMHDYLRQLQRFNVGEDCPVFDGLFEFCQLYASASIGGAAKLNDDAADIVINWSGGLHHAKRGEASGFCYVNDCVLGILELLKKHERVLYIDIDIHHGDGVEEAFYTTNRVMTCSFHKYGEYFPGTGDIKDIGYGDGKNYAVNFPMRDGMDDESFTTVFRGVISKIMEHFAPGAVVLQCGTDSLSGDRLGCFNLSVKGHADCVAYVKSFNVPTLVLGGGGYTLRNVARCWCYETSVLTGIEVPDAMPYNDYFEYYGPEYRLHMPVSNMENLNTPTYLNEMKRMLYEQLQQIEP 379          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: OQR98885.1 (histone deacetylase [Achlya hypogyna])

HSP 1 Score: 530.8 bits (1366), Expect = 3.700e-147
Identity = 259/411 (63.02%), Postives = 298/411 (72.51%), Query Frame = 0
Query:    7 KRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPT-GAQIQTGQPGTSITPADLAVPMTAREREEEAE-DKNPDRRG 376
            K+R+SYFYD+EIGNYHYG  HPMKPHRVRMTH+LV  Y L ++M + RP+ V   ++TRFHSDDYI+FLR ITPDNM  Y+RQLQRFNVGEDCPVFDGLFEFCQL  SGSIGGAA LN K ADIVINW GGLHHAK+SEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHK+GEYFPGTGD+KD GYG+GKNYA+NFP  DGMDDESF+S+FR VI KVME F+PGA+VLQCGADSLSGD                                        RCW YETSV L  EI D +P++DYFEY+GP+Y+LH+PVSNMENLNT  YLE +K+ LF+ L  V            P +++   + A P    E  +E + D  P+  G
Sbjct:   14 KKRVSYFYDSEIGNYHYGPNHPMKPHRVRMTHNLVTNYGLTKHMHIYRPQLVGWEDLTRFHSDDYIHFLRTITPDNMHNYLRQLQRFNVGEDCPVFDGLFEFCQLSASGSIGGAARLNDKSADIVINWGGGLHHAKRSEASGFCYVNDCVLGILELLKEHARVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKYGEYFPGTGDIKDVGYGEGKNYAVNFPCRDGMDDESFTSIFRAVISKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHADCVAYVKSFNVPILLLGGGGYTLRNVPRCWCYETSVALGVEIPDAMPYNDYFEYFGPEYRLHMPVSNMENLNTAEYLEDMKRHLFEQLRQVEAVPSVPFHHVCPSSAVAGCNFAAPKAITEDADEGDADARPEPDG 424          
BLAST of NO13G00710 vs. NCBI_GenBank
Match: XP_012200907.1 (histone deacetylase 1 [Saprolegnia parasitica CBS 223.65] >KDO28468.1 histone deacetylase 1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 528.5 bits (1360), Expect = 1.800e-146
Identity = 247/368 (67.12%), Postives = 284/368 (77.17%), Query Frame = 0
Query:    7 KRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGD----------------------------------------RCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNMENLNTKPYLETIKQQLFDILSNVSP 335
            K+R+SYFYD+EIGNYHYG  HPMKPHRVRMTH+LV  Y L ++M + RP+ V   ++TRFHSDDYI+FLR +TPDNM  Y+RQLQRFNVGEDCPVFDGLFEFCQL  SGSIGGAA LN K ADIVINW GGLHHAK+SEASGFCYVNDCVL ILELLK H RVLYIDIDIHHGDGVEEAFYTT+RVMTVSFHK+GEYFPGTGD+KD GYG+GKNY++NFP  DGMDDESF+S+FR VI KVME F+PGA+VLQCGADSLSGD                                        RCW YETSV L  EI D +P++DYFEY+GP+Y++H+PVSNMENLNT  YL  +K++LF+ L  + P
Sbjct:   13 KKRVSYFYDSEIGNYHYGPNHPMKPHRVRMTHNLVTNYGLTKHMRIFRPQLVGWEDLTRFHSDDYIHFLRTVTPDNMHNYLRQLQRFNVGEDCPVFDGLFEFCQLSASGSIGGAARLNDKSADIVINWGGGLHHAKRSEASGFCYVNDCVLGILELLKEHARVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKYGEYFPGTGDIKDVGYGEGKNYSVNFPCRDGMDDESFTSIFRAVISKVMEHFAPGAVVLQCGADSLSGDRLGCFNLSVKGHGDAVAFVKSFNIPMLVLGGGGYTLRNVPRCWCYETSVALGVEIPDAMPYNDYFEYFGPEYRVHMPVSNMENLNTPSYLHDMKERLFEQLRQIEP 380          
The following BLAST results are available for this feature:
BLAST of NO13G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855159.18.300e-20882.11histone deacetylase 1/2 [Nannochloropsis gaditana ... [more]
EWM21734.11.600e-20681.84histone deacetylase 1 [Nannochloropsis gaditana][more]
XP_002181323.14.800e-16367.60histone deacetylase 1 isoform [Phaeodactylum trico... [more]
XP_002291445.17.200e-15963.66histone deacetylase 1p [Thalassiosira pseudonana C... [more]
XP_009032352.14.600e-15863.56hypothetical protein AURANDRAFT_69603 [Aureococcus... [more]
OEU15542.11.800e-15768.33class I RPD3 type histone deacetylase protein [Fra... [more]
CBJ29452.12.400e-15464.76conserved unknown protein [Ectocarpus siliculosus][more]
GAY04040.14.400e-14865.95histone deacetylase, putative [Pythium insidiosum][more]
OQR98885.13.700e-14763.02histone deacetylase [Achlya hypogyna][more]
XP_012200907.11.800e-14667.12histone deacetylase 1 [Saprolegnia parasitica CBS ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001829NSK001829Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00710.1NO13G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596863gene_6942Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100270g5gene8690Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00710.1NO13G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00710 ID=NO13G00710|Name=NO13G00710|organism=Nannochloropsis oceanica|type=gene|length=1886bp
ATGGCGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGA
AATTGGCAACTATCACTACGGGCAAGGTCATCCCATGAAGgtacttctgc
cagtggaggctgtgtgtttctcttggcttgagccttcacttctgttcttt
cccatccacaccctccccttgcctacttcctcccctgcctggccatgctc
atatatccatcggggacgccataatcgtgcgtgtgcagcattcaattttt
atagcacagcactcccaactccgtcaatatgaaatctgcttgtcctatcc
ctcgctgcttgtcctatccctcgctcactcgccccccctcccctccttct
cctctcccgtatctagCCCCACCGCGTCCGCATGACCCACTCCCTCGTCG
TCTACTATTGGCTTTACCGGAACATGGAAGTCCTGCGGCCCAAGCCCGTC
CTGCTCAGCGAGATGACGCGCTTTCATTCAGATGACTATATTAACTTCCT
GCGGGTAATAACACCGGACAACATGCAAGAATACATGCGACAACTCCAAC
GATTCAATGTCGGGGAAGATTGCCCAGTGTTCGATGGACTTTTTGAGTTC
TGCCAGCTGTACACAAGTGGGTCGATTGGGGGAGCGGCACTGCTGAACCA
AAAAGACGCGGACATCGTGATTAATTGGGCAGGGGGGTTGCATCACGCGA
AGAAATCGGAAGCCTCTGGCTTCTGTTACGTCAACGATTGTGTGCTGGCG
ATCTTAGAGCTGTTGAAGCACCATCACCGGGTGCTTTATATAGACATTGA
CATTCACCATGGGGATGGCGTAGAGGAGGCTTTCTACACCACCGACCGAG
TGATGACTGTTTCGTTTCATAAATTTGGGGAATACTTCCCTGGCACGGGC
GACGTGAAGGACTCCGGGTATGGTGACGGGAAGAACTATGCGATCAATTT
CCCACTGCACGATGGTATGGACGACGAGAGCTTTTCGAGTGTCTTTCGGC
CGGTTATTGGGAAGGTGATGGAGACTTTTTCGCCAGGAGCGATCGTGTTG
CAGTGCGGGGCCGACAGTTTGTCGGGCGACCGgttggggtgttttaattt
aagcctgaaggggcacgcggacgcagtggcgttcgtgaagggttttgatg
tgcccgtgttggtgctcggggggggggatacactctgcggaatgtcccaa
gGTGTTGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCAAGGAC
GATTTGCCGTTTCATGATTATTTTGAATgtacgtcacagtaaagagaagg
gggggaagtaggaagagggaaaatggatatagtgtggcggattgtttgcc
ttttggtccttgtgagttgtgcttcattattttatataacgtgactcatg
caaccggaatcccctccctccctccctcccttactcactccctctgcagA
CTACGGCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAAAATC
TCAACACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGACATC
CTATCCAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGCCCGg
tacgtctcttctttcttgttcgttggagttttcccacgaaagaaaaatgt
attgatgtataggcatacataaatatgcatacaactaaaagactactgat
gtccccaaatcgacagGCACGAGCATTACCCCCGCGGACTTGGCAGTGCC
CATGACAGCCCGTGAGAGGGAGGAGGAGGCAGAGGACAAGAATCCCGATA
GGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAGGGGAGGGAGGGAGGAAG
GAGCATCCGTTGGAGATGATGCCAGAGGGGAAGTAG
back to top

protein sequence of NO13G00710.1

>NO13G00710.1-protein ID=NO13G00710.1-protein|Name=NO13G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MATAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNM
EVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCP
VFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFC
YVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKF
GEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMET
FSPGAIVLQCGADSLSGDRCWAYETSVLLDTEIKDDLPFHDYFEYYGPDY
KLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPTGAQIQTGQPGTSITP
ADLAVPMTAREREEEAEDKNPDRRGGTEREGGGGEGGRKEHPLEMMPEGK
*
back to top
Synonyms
Publications