NO13G00660, NO13G00660 (gene) Nannochloropsis oceanica

Overview
NameNO13G00660
Unique NameNO13G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length856
Alignment locationchr13:225434..226289 -

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Properties
Property NameValue
DescriptionCathepsin l-like proteinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:225434..226289 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR009327Cupin_DUF985
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO13G00660 vs. NCBI_GenBank
Match: XP_005855160.1 (cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526] >EKU21201.1 cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 206.8 bits (525), Expect = 4.700e-50
Identity = 101/136 (74.26%), Postives = 113/136 (83.09%), Query Frame = 0
Query:   22 PEGGFFKETYRSGATPGASKGLTDETGTLLPS-----SSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEGGG 153
            PEGGFFKETYRSGA PGAS+GLTD +GTLLPS     SS+P SPRNICTSIFYLLT+EAP+G+WH N+SNI+HYYQGGDPL+Y+LL PSTG  E+HVLGPDLA G TLQLIV+GGVWKATVL      EGG  G G
Sbjct:  343 PEGGFFKETYRSGACPGASQGLTDTSGTLLPSSPSPASSLPSSPRNICTSIFYLLTTEAPVGFWHKNRSNIVHYYQGGDPLAYYLLPPSTGRLERHVLGPDLAHGHTLQLIVEGGVWKATVL------EGGSVGWG 472          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_104425497.1 (cupin domain-containing protein [Methylobacter tundripaludum] >PPK63663.1 hypothetical protein B0F88_13210 [Methylobacter tundripaludum])

HSP 1 Score: 129.8 bits (325), Expect = 7.300e-27
Identity = 67/133 (50.38%), Postives = 82/133 (61.65%), Query Frame = 0
Query:   10 QEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQE 143
            Q++++ L L PH EGG+F  TYRS    G S                   PR + +SIFY+LT ++PIG+ H NKS+IIHY+ GG PLSYF++HP  G  E  VLG DL KGQ LQLIV GG WKAT LE  E
Sbjct:    4 QQLIEKLSLEPHIEGGYFARTYRSELKTGISS---------------DAKPRCLLSSIFYMLTDDSPIGHLHKNKSDIIHYFHGGSPLSYFIIHPD-GNLEMKVLGSDLDKGQQLQLIVRGGCWKATELETGE 120          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: XP_002740816.1 (PREDICTED: uncharacterized protein YML079W-like [Saccoglossus kowalevskii])

HSP 1 Score: 127.9 bits (320), Expect = 2.800e-26
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0
Query:   10 QEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVL 139
            Q+I+Q   L PH EGG+F+ETYRSGA P AS GLTDE+G ++       S RN+CTSI YL+T  +PI + H NKS+I+ Y+QGG  +  + + P  G   +H LG D   G  LQL+  GG W+A  L
Sbjct:   14 QKIIQTFQLIPHQEGGYFRETYRSGAKPMASHGLTDESGDVMIPGGDRNSVRNVCTSIIYLMTKNSPIAFLHQNKSDIVRYHQGGGTVLVYTVSPD-GRLHQHRLGMDFNAGDVLQLVTPGGFWEALEL 141          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_066053932.1 (MULTISPECIES: cupin domain-containing protein [Halioglobus] >KZX58456.1 cupin [Halioglobus sp. HI00S01] >AQA20107.1 cupin [Halioglobus japonicus] >PLW85209.1 cupin [Halioglobus japonicus])

HSP 1 Score: 126.7 bits (317), Expect = 6.200e-26
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 0
Query:    1 MKKINDCSAQEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVL 139
            M  +N      ++  LGL  H EGG+FK T+++   P    G               + PR   TSI+YLLT+E+P+G+WH+N+S+I+HYY  G PL Y+++HP  G  E  VLGPDLA GQ LQL V GGVWKA+ L
Sbjct:    1 MPNVNYPDRDTVIAQLGLQGHVEGGYFKRTFQADHRPRIDAG---------------IGPRFTMTSIYYLLTAESPVGHWHLNRSDIVHYYHLGAPLHYYMIHPD-GRLETAVLGPDLAAGQQLQLTVRGGVWKASHL 122          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_006891692.1 (cupin domain-containing protein [Methylobacter tundripaludum] >EGW23476.1 protein of unknown function DUF985 [Methylobacter tundripaludum SV96])

HSP 1 Score: 126.3 bits (316), Expect = 8.100e-26
Identity = 66/133 (49.62%), Postives = 84/133 (63.16%), Query Frame = 0
Query:   10 QEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQE 143
            ++++  L L PH EGG+F  TY S            +  T +P+ S    PR + +SIFY+LT ++PIGY H NKS+IIHY+ GG PL+Y +LHP  G  E  VLG DL KGQ LQLIV GG WKAT LE+ E
Sbjct:    4 RQLIDKLSLAPHIEGGYFSRTYSS------------DLKTDIPADS---KPRCLLSSIFYMLTDDSPIGYLHKNKSDIIHYFHGGSPLTYLILHPD-GTLETKVLGADLDKGQQLQLIVRGGCWKATELEEGE 120          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_031437505.1 (cupin domain-containing protein [Methylobacter tundripaludum])

HSP 1 Score: 123.6 bits (309), Expect = 5.200e-25
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 0
Query:   10 QEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQE 143
            ++++  L L PH EGG+F  TY S    G            +P+ S    PR + +SIFY+LT ++PIG+ H NKS+IIHY+ GG PL+Y +LHP  G  E  VLG DL KGQ LQLIV GG WKAT LE  E
Sbjct:    4 RQLIDKLSLAPHIEGGYFSRTYSSDLKTG------------IPADS---KPRCLLSSIFYMLTDDSPIGHLHKNKSDIIHYFHGGSPLTYLILHPD-GTLETKVLGADLDKGQQLQLIVRGGCWKATELETGE 120          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_094118040.1 (cupin domain-containing protein [Lonsdalea britannica] >OSM98340.1 cupin [Lonsdalea britannica])

HSP 1 Score: 123.2 bits (308), Expect = 6.900e-25
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0
Query:   12 IVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEE 144
            ++Q L L  H EGG+F ETYRS       K L +    L          R++ T I+YLLT E+PIGY+H N S I+H+Y  G PL+Y  +HP+ G  E+H+LGPD+ +GQTLQLI DGGVWK+T L    E
Sbjct:    6 LIQKLSLKKHDEGGYFNETYRS---QERIKTLREHNDGL----------RHLSTCIYYLLTKESPIGYFHKNLSPIMHFYHSGGPLTYRFIHPN-GTTEEHILGPDIEQGQTLQLIADGGVWKSTELSADAE 123          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_085650813.1 (cupin domain-containing protein [Lonsdalea britannica] >OSN09423.1 cupin [Lonsdalea britannica])

HSP 1 Score: 123.2 bits (308), Expect = 6.900e-25
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 0
Query:   12 IVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEE 144
            ++Q L L  H EGG+F ETYRS       K L +    L          R++ T I+YLLT E+PIGY+H N S I+H+Y  G PL+Y  +HP+ G  E+H+LGPD+ +GQTLQLI DGGVWK+T L    E
Sbjct:    9 LIQKLSLKKHDEGGYFNETYRS---QERIKTLREHNDGL----------RHLSTCIYYLLTKESPIGYFHKNLSPIMHFYHSGGPLTYRFIHPN-GTTEEHILGPDIEQGQTLQLIADGGVWKSTELSADAE 126          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_027148770.1 (cupin domain-containing protein [Methylobacter tundripaludum])

HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24
Identity = 64/133 (48.12%), Postives = 82/133 (61.65%), Query Frame = 0
Query:   10 QEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQE 143
            ++++  L L PH EGG+F  TY S    G            +P+ +    PR + +SIFY+LT ++PIG+ H NKS+IIHY+ GG PL+Y +LHP  G  E  VLG DL KGQ LQLIV GG WKAT LE  E
Sbjct:    4 RQLIDKLSLAPHIEGGYFSRTYSSDLKTG------------IPADT---KPRCLLSSIFYMLTDDSPIGHLHKNKSDIIHYFHGGSPLTYLILHPD-GTLETKVLGADLDKGQQLQLIVRGGCWKATELEAGE 120          
BLAST of NO13G00660 vs. NCBI_GenBank
Match: WP_008844549.1 (cupin domain-containing protein [Aliiglaciecola lipolytica] >GAC14733.1 cupin family protein [Aliiglaciecola lipolytica E3])

HSP 1 Score: 120.2 bits (300), Expect = 5.800e-24
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 0
Query:    1 MKKINDCSAQEIVQLLGLHPHPEGGFFKETYRSGATP--GASKGLTDETGTLLPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYFLLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEG 151
            M+     S  ++V  LGL PH EGG+FK+T+++ A P    +KG                 PR   TSI+YLLT+++PIG++H N S+I+HY+ GGDP++Y+L++P  G  E   LG D+  G   Q +V+GGVWKA+ +E  +    G  G
Sbjct:    1 MQSTQSPSVTQLVDKLGLEPHVEGGYFKQTFKANADPVIHTAKG-----------------PRVTLTSIYYLLTAQSPIGHFHRNTSDIMHYFHGGDPITYYLIYPD-GRLETKTLGSDVLSGHEFQFVVEGGVWKASTIETNQANGYGLIG 134          
The following BLAST results are available for this feature:
BLAST of NO13G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855160.14.700e-5074.26cathepsin l-like proteinase, partial [Nannochlorop... [more]
WP_104425497.17.300e-2750.38cupin domain-containing protein [Methylobacter tun... [more]
XP_002740816.12.800e-2648.06PREDICTED: uncharacterized protein YML079W-like [S... [more]
WP_066053932.16.200e-2644.93MULTISPECIES: cupin domain-containing protein [Hal... [more]
WP_006891692.18.100e-2649.62cupin domain-containing protein [Methylobacter tun... [more]
WP_031437505.15.200e-2548.87cupin domain-containing protein [Methylobacter tun... [more]
WP_094118040.16.900e-2547.73cupin domain-containing protein [Lonsdalea britann... [more]
WP_085650813.16.900e-2547.73cupin domain-containing protein [Lonsdalea britann... [more]
WP_027148770.11.200e-2448.12cupin domain-containing protein [Methylobacter tun... [more]
WP_008844549.15.800e-2439.47cupin domain-containing protein [Aliiglaciecola li... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001832NSK001832Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G00660.1NO13G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117321gene_6949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G00660.1NO13G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G00660 ID=NO13G00660|Name=NO13G00660|organism=Nannochloropsis oceanica|type=gene|length=856bp
AATTTCAGAATCATATCTCTTTTTTCTCCACGTCGTTGCCCCTCCTAGCT
AGTTTCCTCTCTCGACAAGGGCAGAGACCACACAAGAATACCCGGGACAC
TCCTCACGACCCGTTGTCCCTTTATCATACCTTTCTAACCATAATAATAC
AATACCATCCACCCACCCACCCACAGACATAACTCCAGACAGACTCCTTC
ATCCACTTCCTTCCTTCCGTAACGTTCCTCTCGATGAAAAAAATCAACGA
CTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGGACTCCATCCACgtacgt
ttgatgaaggaaaaaagtgatggggtgggagaggcaagaaagtcgacagg
gaggaacatccctatcattgaaacattggatttcttctatcctttcttgc
atcattctcatccattctcctcccttgcccaacgtttgatccctcatctt
agACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAGCGGCGCCACGC
CAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCCTCCTCCCCTCG
TCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCCATCTTCTACCT
CCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAACAAGTCAAATA
TAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACTTCCTCCTTCAC
CCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCTGATCTTGCGAA
AGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATGGAAGGCGACGG
TGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGGGGTGGGGAT
TGTTAG
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protein sequence of NO13G00660.1

>NO13G00660.1-protein ID=NO13G00660.1-protein|Name=NO13G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MKKINDCSAQEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTL
LPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYF
LLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEG
GGDC*
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Synonyms
Publications